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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma02g13140

Feature Type:gene_model
Chromosome:Gm02
Start:11357973
stop:11360502
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g13140
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G14910AT Annotation by Michelle Graham. TAIR10: HISTIDINE BIOSYNTHESIS 5B | chr4:8528451-8530105 REVERSE LENGTH=272 SoyBaseE_val: 2.00E-65ISS
GO:0000105GO-bp Annotation by Michelle Graham. GO Biological Process: histidine biosynthetic process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0004424GO-mf Annotation by Michelle Graham. GO Molecular Function: imidazoleglycerol-phosphate dehydratase activity SoyBaseN/AISS
PTHR23133Panther IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE HIS7 JGI ISS
PTHR23133:SF2Panther IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE HIS7 JGI ISS
PF00475PFAM Imidazoleglycerol-phosphate dehydratase JGI ISS
UniRef100_I3T3H2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Imidazoleglycerol-phosphate dehydratase n=1 Tax=Lotus japonicus RepID=I3T3H2_LOTJA SoyBaseE_val: 1.00E-65ISS
UniRef100_UPI0002337993UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002337993 related cluster n=1 Tax=unknown RepID=UPI0002337993 SoyBaseE_val: 5.00E-89ISS

Expression Patterns of Glyma02g13140
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g13140 not represented in the dataset
Glyma02g13140 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g13140 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g118700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g13140
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g13140
>Glyma02g13140.2   sequence type=CDS   gene model=Glyma02g13140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGCAAAGTTGGAGGATAGTAAGCATAAGTTGCAGATATGGTTGATAAATGATTCTCTAACGCAACTTGCTTCACATGGGCTGTTCGATGTACACGTAAAGGCTACAGGTGATGTACATATTGATGATCATCACACAAATGAAGACGCTTTGCTGCAGGCTCTTGGTGATAGGAAGGGTATTAACCGGGTTGGTAACTTCTCTGCTCCACTTGATGAAGCATTAATACATGTTTCACTGGATTTGTCTGGCCGACCACATCTAAGTTATAATTTGGAGATACCCAGGGTTGGGACATATGATCGGCATTTCTTCGAATCCTTGGTGAACACGTCTGGTATGACACTTCACATTTGGCAGGCAGCACAGCTTGCTGAAAAAAATTCTCATCGTATTATTGAGGCCAGGCAAACATTCAAAGCTTTTGTCAAGGCTCTACGACAAGCAACATAG
Predicted protein sequences of Glyma02g13140
>Glyma02g13140.2   sequence type=predicted peptide   gene model=Glyma02g13140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAKLEDSKHKLQIWLINDSLTQLASHGLFDVHVKATGDVHIDDHHTNEDALLQALGDRKGINRVGNFSAPLDEALIHVSLDLSGRPHLSYNLEIPRVGTYDRHFFESLVNTSGMTLHIWQAAQLAEKNSHRIIEARQTFKAFVKALRQAT*






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