Glyma02g13130 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma02g13130

Feature Type:	gene_model
Chromosome:	Gm02
Start:	11354292
stop:	11357523
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g13130

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G22070	AT	Annotation by Michelle Graham. TAIR10: pentatricopeptide (PPR) repeat-containing protein \| chr2:9383602-9385962 FORWARD LENGTH=786	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF95	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_D7LCN4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LCN4_ARALL	SoyBase	E_val: 0	ISS
UniRef100_UPI0002337992	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337992 related cluster n=1 Tax=unknown RepID=UPI0002337992	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g13130

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g13130 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g118600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g13130

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g13130

Limit To All Plant Sequences

>Glyma02g13130.3   sequence type=transcript   gene model=Glyma02g13130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTCCTTAGTCCCTATAGTTTTCTCTAAACGTTTTAGTTATGCAATTCTGTTAACTACGACTACGAGATTACAACAGAGTGAACAGACACTGCACCGTGCTTGTGTTGATGCTAACACCAACCCCAAACCCTCCCTCCCATTCCGATGCATGCGTGCACCTTCTCCAATCTGCAATCAAATCACGAGACCCATTCATCGGAAGATGCATTCACGCTCGAATCATCAAACACGGCCTTCGCTACCTCGGCGTCTTCCTCACAAACAACCTCCTCAACCTCTACGTCAAAACCGGCTCCTCCTCTGACGCCCATCGCCTGTTCGATGAAATGCCCCTTAAGACCACCTTCTCATGGAACACCATTCTCTCCGCGCATGCCAAGGCTGGCAACTTGGACTCCGCGCGCCGAGTGTTTGATGAAATTCCCCAACCAGATTCTGTGTCCTGGACCACCATGATAGTGGGGTATAACCACTTGGGTCTTTTCAAAAGCGCTGTTCACGCGTTTCTCCGAATGGTTTCCTCTGGAATTTCGCCGACCCAGTTCACGTTTACCAATGTTCTTGCCTCATGTGCTGCAGCTCAGGCTCTGGATGTTGGAAAGAAGGTTCATTCCTTTGTCGTAAAACTGGGGCAATCCGGGGTTGTTCCCGTGGCAAACTCACTGCTTAACATGTATGCAAAGTGTGGTGATTCTGTTATGGCAAAGGTTGTTTTTGACCGGATGAGGCTGAAGGATACATCTACTTGGAATACTATGATTTCTATGCATATGCAGTTTTGTCAATTTGACCTTGCACTTGCACTCTTTGATCAAATGACTGACCCGGATATTGTCTCTTGGAATTCCATCATCACTGGGTACTGTCATCAGGGATATGACATCAGAGCCTTGGAAACATTTTCTTTTATGCTTAAGAGTTCGTCTTTGAAGCCAGATAAGTTCACCTTGGGAAGTGTTCTGTCAGCTTGTGCCAATCGGGAAAGCTTGAAACTTGGGAAACAAATCCATGCACATATTGTAAGAGCCGATGTTGACATCGCTGGGGCAGTGGGGAATGCCCTGATCTCAATGTATGCGAAATCGGGTGCTGTTGAAGTTGCTCATAGGATTGTAGAAATAACCGGTACTCCAAGTCTTAATGTTATAGCATTCACGTCACTGTTGGATGGCTATTTCAAAATTGGGGATATAGACCCTGCAAGAGCCATATTTGATTCATTGAAGCACCGTGATGTAGTTGCCTGGACTGCCATGATTGTTGGTTATGCACAGAATGGCTTAATTAGTGATGCTTTGGTGCTGTTTAGGTTAATGATTAGAGAAGGTCCAAAGCCAAACAACTATACCCTGGCAGCGGTATTAAGTGTCATTTCAAGTTTGGCTTCTCTGGATCACGGTAAGCAGCTTCATGCAGTTGCCATAAGATTGGAAGAAGTATCATCAGTTTCTGTGGGTAATGCTTTGATTACCATGTACTCAAGATCTGGTAGCATCAAAGATGCTAGAAAAATATTCAATCACATATGCTCCTACAGGGATACATTGACTTGGACTTCCATGATTTTATCTCTAGCTCAACATGGTCTTGGAAATGAGGCCATAGAACTGTTTGAAAAGATGCTGAGAATTAACCTAAAGCCTGATCACATTACTTATGTTGGTGTGTTGTCTGCTTGCACGCATGTGGGATTGGTAGAACAGGGTAAAAGTTACTTTAATTTGATGAAAAATGTTCATAACATTGAACCCACTTCTAGCCACTATGCATGCATGATTGACCTGCTTGGACGTGCTGGATTGCTTGAAGAAGCATATAATTTTATTAGAAATATGCCTATTGAACCAGATGTTGTAGCTTGGGGTTCGCTTTTGTCTTCGTGTAGGGTTCATAAATATGTCGATCTGGCTAAAGTGGCTGCTGAAAAATTGCTTCTTATTGATCCTAATAATAGTGGGGCTTACTTAGCGCTTGCTAATACACTTTCAGCCTGTGGTAAATGGGAGGATGCTGCTAAGGTTAGGAAGTCAATGAAGGACAAAGCAGTAAAGAAAGAACAAGGATTCAGTTGGGTTCAAATCAAGAACAAAGTCCATATTTTTGGGGTTGAGGATGCTCTTCACCCGCAAAGAGATGCAATCTACTGTATGATTTCCAAAATATGGAAGGAGATAAAGAAAATGGGCTTTATTCCTGACACCAATTCTGTATTGCATGACCTAGAGCAAGAAGTGAAAGAACAGATCCTTAGACATCATAGTGAAAAACTCGCCATTGCATTTGCATTAATAAATACACCAAAGCATACTACAGTGAGGATCATGAAGAACCTTAGAGTCTGTAATGACTGTCATTCTGCCATAAGATATATCTCTTTGCTTGTGGAAAGAGAAATTATAGTAAGAGATGCAACGCGTTTTCATCATTTTAAGGATGGTTCTTGCTCCTGTCAGGATTACTGGTAGAAGAAACAGGTGGATTTCATGTCTTAAAGGGAATGAGTGGAAGAATGATTGAGTCAATCAAGCTTGCAGGTGAAGTCTCATATTACCAAATTGGACATGTTCAGCAACGTTGGATTTAAATCAATCACTTCAGATAACTCAGTGAACCCTCTTAGGCTAGTCTGCGAAGGTTCTAACTTCTAGGAAAGTTGCTCTACAACAATCGTAAGAGCATTTCGAGGAGCATTGTTACAATCAAAGACTCAACCCGAAGCAACACAGAGCATGGTGAGCAAGAAATAGGACCAAACACAGAAACAACTCAGGAAGCAGAATTCAAGCTAGAAACAGGGTCGAGCAAGGAAAAAGCTTCAAGGCCAAAAAGGGAAATTGTTAAACCTCAATACCTCAAGGATTTTGTGGAAAAATAGTAGCTGGCAAGAGTGGTGCTCAGCAATTGCAGCAACGTAGCAATTCCCCCTTTGTCTGCTGAGGTGGCACCAGTCCATTAGGAAGCATATTCCTTTTGTTTTTGTTTTTTTCTCCAAGGCAATATGCCACAAGAATCCATTAGAATTGTTAGTAGCAGAAAACGAGTCTATATAAAGCAGGGCAATGTATCTAATTGATAAGCAATAATACAAGAATTTTCCCATTTCTCCCTTTAA

Coding sequences of Glyma02g13130

Limit To All Plant Sequences

>Glyma02g13130.2   sequence type=CDS   gene model=Glyma02g13130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTAACACCAACCCCAAACCCTCCCTCCCATTCCGATGCATGCGTGCACCTTCTCCAATCTGCAATCAAATCACGAGACCCATTCATCGGAAGATGCATTCACGCTCGAATCATCAAACACGGCCTTCGCTACCTCGGCGTCTTCCTCACAAACAACCTCCTCAACCTCTACGTCAAAACCGGCTCCTCCTCTGACGCCCATCGCCTGTTCGATGAAATGCCCCTTAAGACCACCTTCTCATGGAACACCATTCTCTCCGCGCATGCCAAGGCTGGCAACTTGGACTCCGCGCGCCGAGTGTTTGATGAAATTCCCCAACCAGATTCTGTGTCCTGGACCACCATGATAGTGGGGTATAACCACTTGGGTCTTTTCAAAAGCGCTGTTCACGCGTTTCTCCGAATGGTTTCCTCTGGAATTTCGCCGACCCAGTTCACGTTTACCAATGTTCTTGCCTCATGTGCTGCAGCTCAGGCTCTGGATGTTGGAAAGAAGGTTCATTCCTTTGTCGTAAAACTGGGGCAATCCGGGGTTGTTCCCGTGGCAAACTCACTGCTTAACATGTATGCAAAGTGTGGTGATTCTGTTATGGCAAAGGTTGTTTTTGACCGGATGAGGCTGAAGGATACATCTACTTGGAATACTATGATTTCTATGCATATGCAGTTTTGTCAATTTGACCTTGCACTTGCACTCTTTGATCAAATGACTGACCCGGATATTGTCTCTTGGAATTCCATCATCACTGGGTACTGTCATCAGGGATATGACATCAGAGCCTTGGAAACATTTTCTTTTATGCTTAAGAGTTCGTCTTTGAAGCCAGATAAGTTCACCTTGGGAAGTGTTCTGTCAGCTTGTGCCAATCGGGAAAGCTTGAAACTTGGGAAACAAATCCATGCACATATTGTAAGAGCCGATGTTGACATCGCTGGGGCAGTGGGGAATGCCCTGATCTCAATGTATGCGAAATCGGGTGCTGTTGAAGTTGCTCATAGGATTGTAGAAATAACCGGTACTCCAAGTCTTAATGTTATAGCATTCACGTCACTGTTGGATGGCTATTTCAAAATTGGGGATATAGACCCTGCAAGAGCCATATTTGATTCATTGAAGCACCGTGATGTAGTTGCCTGGACTGCCATGATTGTTGGTTATGCACAGAATGGCTTAATTAGTGATGCTTTGGTGCTGTTTAGGTTAATGATTAGAGAAGGTCCAAAGCCAAACAACTATACCCTGGCAGCGGTATTAAGTGTCATTTCAAGTTTGGCTTCTCTGGATCACGGTAAGCAGCTTCATGCAGTTGCCATAAGATTGGAAGAAGTATCATCAGTTTCTGTGGGTAATGCTTTGATTACCATGTACTCAAGATCTGGTAGCATCAAAGATGCTAGAAAAATATTCAATCACATATGCTCCTACAGGGATACATTGACTTGGACTTCCATGATTTTATCTCTAGCTCAACATGGTCTTGGAAATGAGGCCATAGAACTGTTTGAAAAGATGCTGAGAATTAACCTAAAGCCTGATCACATTACTTATGTTGGTGTGTTGTCTGCTTGCACGCATGTGGGATTGGTAGAACAGGGTAAAAGTTACTTTAATTTGATGAAAAATGTTCATAACATTGAACCCACTTCTAGCCACTATGCATGCATGATTGACCTGCTTGGACGTGCTGGATTGCTTGAAGAAGCATATAATTTTATTAGAAATATGCCTATTGAACCAGATGTTGTAGCTTGGGGTTCGCTTTTGTCTTCGTGTAGGGTTCATAAATATGTCGATCTGGCTAAAGTGGCTGCTGAAAAATTGCTTCTTATTGATCCTAATAATAGTGGGGCTTACTTAGCGCTTGCTAATACACTTTCAGCCTGTGGTAAATGGGAGGATGCTGCTAAGGTTAGGAAGTCAATGAAGGACAAAGCAGTAAAGAAAGAACAAGGATTCAGTTGGGTTCAAATCAAGAACAAAGTCCATATTTTTGGGGTTGAGGATGCTCTTCACCCGCAAAGAGATGCAATCTACTGTATGATTTCCAAAATATGGAAGGAGATAAAGAAAATGGGCTTTATTCCTGACACCAATTCTGTATTGCATGACCTAGAGCAAGAAGTGAAAGAACAGATCCTTAGACATCATAGTGAAAAACTCGCCATTGCATTTGCATTAATAAATACACCAAAGCATACTACAGTGAGGATCATGAAGAACCTTAGAGTCTGTAATGACTGTCATTCTGCCATAAGATATATCTCTTTGCTTGTGGAAAGAGAAATTATAGTAAGAGATGCAACGCGTTTTCATCATTTTAAGGATGGTTCTTGCTCCTGTCAGGATTACTGGTAG

>Glyma02g13130.3   sequence type=CDS   gene model=Glyma02g13130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTAACACCAACCCCAAACCCTCCCTCCCATTCCGATGCATGCGTGCACCTTCTCCAATCTGCAATCAAATCACGAGACCCATTCATCGGAAGATGCATTCACGCTCGAATCATCAAACACGGCCTTCGCTACCTCGGCGTCTTCCTCACAAACAACCTCCTCAACCTCTACGTCAAAACCGGCTCCTCCTCTGACGCCCATCGCCTGTTCGATGAAATGCCCCTTAAGACCACCTTCTCATGGAACACCATTCTCTCCGCGCATGCCAAGGCTGGCAACTTGGACTCCGCGCGCCGAGTGTTTGATGAAATTCCCCAACCAGATTCTGTGTCCTGGACCACCATGATAGTGGGGTATAACCACTTGGGTCTTTTCAAAAGCGCTGTTCACGCGTTTCTCCGAATGGTTTCCTCTGGAATTTCGCCGACCCAGTTCACGTTTACCAATGTTCTTGCCTCATGTGCTGCAGCTCAGGCTCTGGATGTTGGAAAGAAGGTTCATTCCTTTGTCGTAAAACTGGGGCAATCCGGGGTTGTTCCCGTGGCAAACTCACTGCTTAACATGTATGCAAAGTGTGGTGATTCTGTTATGGCAAAGGTTGTTTTTGACCGGATGAGGCTGAAGGATACATCTACTTGGAATACTATGATTTCTATGCATATGCAGTTTTGTCAATTTGACCTTGCACTTGCACTCTTTGATCAAATGACTGACCCGGATATTGTCTCTTGGAATTCCATCATCACTGGGTACTGTCATCAGGGATATGACATCAGAGCCTTGGAAACATTTTCTTTTATGCTTAAGAGTTCGTCTTTGAAGCCAGATAAGTTCACCTTGGGAAGTGTTCTGTCAGCTTGTGCCAATCGGGAAAGCTTGAAACTTGGGAAACAAATCCATGCACATATTGTAAGAGCCGATGTTGACATCGCTGGGGCAGTGGGGAATGCCCTGATCTCAATGTATGCGAAATCGGGTGCTGTTGAAGTTGCTCATAGGATTGTAGAAATAACCGGTACTCCAAGTCTTAATGTTATAGCATTCACGTCACTGTTGGATGGCTATTTCAAAATTGGGGATATAGACCCTGCAAGAGCCATATTTGATTCATTGAAGCACCGTGATGTAGTTGCCTGGACTGCCATGATTGTTGGTTATGCACAGAATGGCTTAATTAGTGATGCTTTGGTGCTGTTTAGGTTAATGATTAGAGAAGGTCCAAAGCCAAACAACTATACCCTGGCAGCGGTATTAAGTGTCATTTCAAGTTTGGCTTCTCTGGATCACGGTAAGCAGCTTCATGCAGTTGCCATAAGATTGGAAGAAGTATCATCAGTTTCTGTGGGTAATGCTTTGATTACCATGTACTCAAGATCTGGTAGCATCAAAGATGCTAGAAAAATATTCAATCACATATGCTCCTACAGGGATACATTGACTTGGACTTCCATGATTTTATCTCTAGCTCAACATGGTCTTGGAAATGAGGCCATAGAACTGTTTGAAAAGATGCTGAGAATTAACCTAAAGCCTGATCACATTACTTATGTTGGTGTGTTGTCTGCTTGCACGCATGTGGGATTGGTAGAACAGGGTAAAAGTTACTTTAATTTGATGAAAAATGTTCATAACATTGAACCCACTTCTAGCCACTATGCATGCATGATTGACCTGCTTGGACGTGCTGGATTGCTTGAAGAAGCATATAATTTTATTAGAAATATGCCTATTGAACCAGATGTTGTAGCTTGGGGTTCGCTTTTGTCTTCGTGTAGGGTTCATAAATATGTCGATCTGGCTAAAGTGGCTGCTGAAAAATTGCTTCTTATTGATCCTAATAATAGTGGGGCTTACTTAGCGCTTGCTAATACACTTTCAGCCTGTGGTAAATGGGAGGATGCTGCTAAGGTTAGGAAGTCAATGAAGGACAAAGCAGTAAAGAAAGAACAAGGATTCAGTTGGGTTCAAATCAAGAACAAAGTCCATATTTTTGGGGTTGAGGATGCTCTTCACCCGCAAAGAGATGCAATCTACTGTATGATTTCCAAAATATGGAAGGAGATAAAGAAAATGGGCTTTATTCCTGACACCAATTCTGTATTGCATGACCTAGAGCAAGAAGTGAAAGAACAGATCCTTAGACATCATAGTGAAAAACTCGCCATTGCATTTGCATTAATAAATACACCAAAGCATACTACAGTGAGGATCATGAAGAACCTTAGAGTCTGTAATGACTGTCATTCTGCCATAAGATATATCTCTTTGCTTGTGGAAAGAGAAATTATAGTAAGAGATGCAACGCGTTTTCATCATTTTAAGGATGGTTCTTGCTCCTGTCAGGATTACTGGTAG

Predicted protein sequences of Glyma02g13130

Limit To All Plant Sequences

>Glyma02g13130.2   sequence type=predicted peptide   gene model=Glyma02g13130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLTPTPNPPSHSDACVHLLQSAIKSRDPFIGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALANTLSACGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKVHIFGVEDALHPQRDAIYCMISKIWKEIKKMGFIPDTNSVLHDLEQEVKEQILRHHSEKLAIAFALINTPKHTTVRIMKNLRVCNDCHSAIRYISLLVEREIIVRDATRFHHFKDGSCSCQDYW*

>Glyma02g13130.3   sequence type=predicted peptide   gene model=Glyma02g13130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLTPTPNPPSHSDACVHLLQSAIKSRDPFIGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALANTLSACGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKVHIFGVEDALHPQRDAIYCMISKIWKEIKKMGFIPDTNSVLHDLEQEVKEQILRHHSEKLAIAFALINTPKHTTVRIMKNLRVCNDCHSAIRYISLLVEREIIVRDATRFHHFKDGSCSCQDYW*

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