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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G18650 | AT | Annotation by Michelle Graham. TAIR10: plasmodesmata callose-binding protein 3 | chr1:6419036-6420413 REVERSE LENGTH=184 | SoyBase | E_val: 3.00E-41 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0031225 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane | SoyBase | N/A | ISS |
| GO:0001872 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: (1->3)-beta-D-glucan binding | SoyBase | N/A | ISS |
| GO:0030247 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: polysaccharide binding | SoyBase | N/A | ISS |
| PTHR16631 | Panther | GLUCAN 1,3-BETA-GLUCOSIDASE-RELATED | JGI | ISS | |
| PTHR16631:SF1 | Panther | GLUCAN 1,3-BETA-GLUCOSIDASE | JGI | ISS | |
| PF07983 | PFAM | X8 domain | JGI | ISS | |
| UniRef100_G7JHI2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glucan endo-1,3-beta-glucosidase-like protein n=1 Tax=Medicago truncatula RepID=G7JHI2_MEDTR | SoyBase | E_val: 5.00E-63 | ISS |
| UniRef100_I1JED8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JED8_SOYBN | SoyBase | E_val: 4.00E-149 | ISS |
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Glyma02g12950 not represented in the dataset |
Glyma02g12950 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g07100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g116100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g12950.2 sequence type=transcript gene model=Glyma02g12950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTATACTGTTGTATAGTATAAATAATAAATAATAATAAAAGCTTCTGCTTTAGTACAATTCCCCAGAACAGAACACTCTCCCCAGTGAAGCGTACATAATAAAGTTACATTACTTAGTACTCTATTAATTTATTATGATTTATATTAATACAATAATACTTATGTACATAATGTTCAACACATAAAAGGGTGCCTGAAAAGTGTACCAGACAGGCTCCTACCACCTCACCTCTTGTCCAGAAATCTCCATTCTCCAAAACTGCTTCAACTCTTCTCATTCTCTCTATCTCTCTCTCTGCCTCACACTGGAGTACCCTCTTCAATTTCCATCAATTAAGTTTCTCTAATACCCTCTGAATCATCATCATCATCATCATCATTAGTCATGGCTCTTGTGATATATTTTGTGCTTTTTCTTGCCCTCACTGGCCATTCAAGTAAGCACCTGGATTTGCTTGTGTTTGTTTCAAGTTTCATGGGATGGGTTCTCATGATTACTTTTCCTTACTGATTTTCCTGTTTTTGGTTTTGTGACAAAGCTTGGGATTTTAGAAAGGATTTTGTTCAAGGAATCTTTTCTATTTCTGTTCTGTTTTACTTGGTGGTGCTGAAAAAAAAGATGGGGTTTTTATTTCAATTTTTGATTTTTTTTCCAATAGGTGCTCTTTACTGTGTATGCAAAGATGGTGTGGGTGATCAAGCTCTTCAGAAAGCAATAGACTATGCATGTGGTGCTGGAGCTGACTGTACCCCTATTCTCCAAAATGGAGCATGTTTCCAACCTAACACTGTGAAGGATCACTGCAACTATGCTGTTAATAGCTATTTCCAGAGAAAGGGTCAAGCTCAGGGAAGCTGTGATTTTTCTGGTGCTGCCACCCCTAGTCAAACACCACCCACTGCAGCATCTACATGTGTTTACCCCTCTAGTCCTAGCAATGCTGGAACAGGCACCACAGCAACTCCAACAACCACTACACCAACAACAGGCACACCACCCACCACCTTAACTCCAACCACCCCCACTACTACCACTCCAGGCACAACCACCGGTACCAGCCCAACCACTGGCACTGGTACCGGCACCGGCACCGGCACCACCATAGGTAACCCTAATGTGTTTGGAATGAGTCCAACATCTTCAACTGGAACAGGAGGAGGCTTCAATGACCCAAACAAAGGAGTGGTTCATTTGCAAGACATAAGCATGTTGCTAGTGTCTCTTGTTATCACCTTCTTGCTAGTAATGTTGAGGGTCTAATAATAAGTGGTACAGTTCTTGGGAAAAAAAAAACACTTTTGGGGCTGTTTGTTTTGATGTGTGGATGAGATTTTGCCACACTGTACAAGGGTGTTCTTGTAATTTCATCACTTGGAATCATCCAGAAGCAAAACCCCCCACTTTAGCCTCCTGTTTGTTTTTGTTCTGTTCCTACTTCTAAGAAAAGAGAGAAAAAAAGAAGTGTTAGGGAATTTGGTTCCTTTTCAGTGGTGAATATTTGATAATATAGCTACTAATGGGGTGGAACCTGATCGGTTTCCATTTGTATATTATCTATCTATCACTATGAGAGGCACTATTTTTTATTTATTTTTATTTACTGAGCCTTGCTAGTTGCTACCTTGTATTATTTATATGTTAATATGTGATATTTACTTGTTTTTTACTTATCTATGATCCCTTATTCCTTTTTCTTTTGTT
>Glyma02g12950.1 sequence type=CDS gene model=Glyma02g12950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCTTGTGATATATTTTGTGCTTTTTCTTGCCCTCACTGGCCATTCAAGTGCTCTTTACTGTGTATGCAAAGATGGTGTGGGTGATCAAGCTCTTCAGAAAGCAATAGACTATGCATGTGGTGCTGGAGCTGACTGTACCCCTATTCTCCAAAATGGAGCATGTTTCCAACCTAACACTGTGAAGGATCACTGCAACTATGCTGTTAATAGCTATTTCCAGAGAAAGGGTCAAGCTCAGGGAAGCTGTGATTTTTCTGGTGCTGCCACCCCTAGTCAAACACCACCCACTGCAGCATCTACATGTGTTTACCCCTCTAGTCCTAGCAATGCTGGAACAGGCACCACAGCAACTCCAACAACCACTACACCAACAACAGGCACACCACCCACCACCTTAACTCCAACCACCCCCACTACTACCACTCCAGGCACAACCACCGGTACCAGCCCAACCACTGGCACTGGTACCGGCACCGGCACCGGCACCACCATAGGTAACCCTAATGTGTTTGGAATGAGTCCAACATCTTCAACTGGAACAGGAGGAGGCTTCAATGACCCAAACAAAGGAGTGGTTCATTTGCAAGACATAAGCATGTTGCTAGTGTCTCTTGTTATCACCTTCTTGCTAGTAATGTTGAGGGTCTAA >Glyma02g12950.2 sequence type=CDS gene model=Glyma02g12950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGTTTTTATTTCAATTTTTGATTTTTTTTCCAATAGGTGCTCTTTACTGTGTATGCAAAGATGGTGTGGGTGATCAAGCTCTTCAGAAAGCAATAGACTATGCATGTGGTGCTGGAGCTGACTGTACCCCTATTCTCCAAAATGGAGCATGTTTCCAACCTAACACTGTGAAGGATCACTGCAACTATGCTGTTAATAGCTATTTCCAGAGAAAGGGTCAAGCTCAGGGAAGCTGTGATTTTTCTGGTGCTGCCACCCCTAGTCAAACACCACCCACTGCAGCATCTACATGTGTTTACCCCTCTAGTCCTAGCAATGCTGGAACAGGCACCACAGCAACTCCAACAACCACTACACCAACAACAGGCACACCACCCACCACCTTAACTCCAACCACCCCCACTACTACCACTCCAGGCACAACCACCGGTACCAGCCCAACCACTGGCACTGGTACCGGCACCGGCACCGGCACCACCATAGGTAACCCTAATGTGTTTGGAATGAGTCCAACATCTTCAACTGGAACAGGAGGAGGCTTCAATGACCCAAACAAAGGAGTGGTTCATTTGCAAGACATAAGCATGTTGCTAGTGTCTCTTGTTATCACCTTCTTGCTAGTAATGTTGAGGGTCTAA
>Glyma02g12950.1 sequence type=predicted peptide gene model=Glyma02g12950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALVIYFVLFLALTGHSSALYCVCKDGVGDQALQKAIDYACGAGADCTPILQNGACFQPNTVKDHCNYAVNSYFQRKGQAQGSCDFSGAATPSQTPPTAASTCVYPSSPSNAGTGTTATPTTTTPTTGTPPTTLTPTTPTTTTPGTTTGTSPTTGTGTGTGTGTTIGNPNVFGMSPTSSTGTGGGFNDPNKGVVHLQDISMLLVSLVITFLLVMLRV* >Glyma02g12950.2 sequence type=predicted peptide gene model=Glyma02g12950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGFLFQFLIFFPIGALYCVCKDGVGDQALQKAIDYACGAGADCTPILQNGACFQPNTVKDHCNYAVNSYFQRKGQAQGSCDFSGAATPSQTPPTAASTCVYPSSPSNAGTGTTATPTTTTPTTGTPPTTLTPTTPTTTTPGTTTGTSPTTGTGTGTGTGTTIGNPNVFGMSPTSSTGTGGGFNDPNKGVVHLQDISMLLVSLVITFLLVMLRV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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