Glyma02g12830 - SoyBase

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Report for Sequence Feature Glyma02g12830

Feature Type:	gene_model
Chromosome:	Gm02
Start:	11099498
stop:	11107140
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g12830

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G69310	AT	Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 57 \| chr1:26056118-26057909 REVERSE LENGTH=287	SoyBase	E_val: 1.00E-73	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006970	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to osmotic stress	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_A7LHH3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WRKY32 n=1 Tax=Glycine max RepID=A7LHH3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1JEC8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JEC8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g12830

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g12830

Paralog	Evidence	Comments
Glyma01g06870	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g12830 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g115200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g12830

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g12830

Limit To All Plant Sequences

>Glyma02g12830.1   sequence type=CDS   gene model=Glyma02g12830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGACAAAGACAGAGCAGCCTCCGATCCAGCTGAGTTCGCCGGCGACACGAGTTGGACACTCGCCACCGATGACTCCGACGGTGCGTACCTGTTCCCCGGCGACCGGGAGCGGAGCATACTCAGGGAATTCGGGTGGAACCTCGAACCGGACCAGCCAAACCGGATCGGCACCGACGACGGATCGTGGAGGCCGGTTCAGTCCTCTCTGACCGGTTCGATCGAACCGGCCGCCGCCATGTCGTCTAGGTCGAATAACCAATCGGTGTCGTCCAGCTCCAGCGAGGACCCGCCGGAGAAATCCACCGTCTCCGACGAGAAACCGCCTGAGATACCGAGTAAAGGTAAAAAGAAGGGGCAAAAGCGAATACGGCAGCCACGGTTTGCATTTATGACCAAGACTGAAGTTGATCATCTTGAGGATGGCTACAGATGGCGGAAGTATGGTCAGAAGGCAGTTAAAAATAGTCCTTTCCCTAGGAGCTACTACCGGTGCACAAACAGCAAATGCACGGTGAAGAAGAGGGTTGAACGGTCTTCCGAGGACCCAACAATTGTGATTACCACATATGAAGGGCAACACTGTCATCACACAGTTGGATTTCCTCGAGGGGGAATCATTAGTCATGAAGCTGCATTTGCGGGCCAGTTGGCTCCAACAATGTCACAGTTTTATTATCCGATTCAATTACCCAGCAGAGAGAATGATGATAATAATAATAATACTTTGAGCACTATTTCTCAGCCATGCCAAGCACAGGATGAAACTGGAGAAGGATCAAGTGTTATGATGCCAGCTGATGGATCGTCACCGTCACAGCCTCCCACGGATGAAGGGTTGCTTGGAGATATTGTTCCCCCGGGAATGCGCATCAGATGA

Predicted protein sequences of Glyma02g12830

Limit To All Plant Sequences

>Glyma02g12830.1   sequence type=predicted peptide   gene model=Glyma02g12830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDKDRAASDPAEFAGDTSWTLATDDSDGAYLFPGDRERSILREFGWNLEPDQPNRIGTDDGSWRPVQSSLTGSIEPAAAMSSRSNNQSVSSSSSEDPPEKSTVSDEKPPEIPSKGKKKGQKRIRQPRFAFMTKTEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGFPRGGIISHEAAFAGQLAPTMSQFYYPIQLPSRENDDNNNNTLSTISQPCQAQDETGEGSSVMMPADGSSPSQPPTDEGLLGDIVPPGMRIR*

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