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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G13890 | AT | Annotation by Michelle Graham. TAIR10: soluble N-ethylmaleimide-sensitive factor adaptor protein 30 | chr1:4751581-4752844 FORWARD LENGTH=263 | SoyBase | E_val: 3.00E-121 | ISS |
| GO:0000910 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis | SoyBase | N/A | ISS |
| GO:0009827 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification | SoyBase | N/A | ISS |
| GO:0009860 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen tube growth | SoyBase | N/A | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005484 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: SNAP receptor activity | SoyBase | N/A | ISS |
| KOG3065 | KOG | SNAP-25 (synaptosome-associated protein) component of SNARE complex | JGI | ISS | |
| PTHR19305 | Panther | SYNAPTOSOMAL ASSOCIATED PROTEIN | JGI | ISS | |
| PF05739 | PFAM | SNARE domain | JGI | ISS | |
| PF12352 | PFAM | Snare region anchored in the vesicle membrane C-terminus | JGI | ISS | |
| UniRef100_G7JXY1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: SNAP25 homologous protein SNAP33 n=1 Tax=Medicago truncatula RepID=G7JXY1_MEDTR | SoyBase | E_val: 4.00E-151 | ISS |
| UniRef100_UPI000233798B | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233798B related cluster n=1 Tax=unknown RepID=UPI000233798B | SoyBase | E_val: 0 | ISS |
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Glyma02g12821 not represented in the dataset |
Glyma02g12821 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g06860 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g115100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g12821.2 sequence type=transcript gene model=Glyma02g12821 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTTCGCGGTACCTTTCGTCTGTTTCTTATTTTTCAACGAACCCTACAGAATTCTCAGTCTCGTATGTTCTGTTTCGACCATCCCCTGTTCCTTTTCTGTTGCTTGTTCCTCTCTTGTACGCAAATCCATCACCACGTACCATAGCATAACCTTCTTGTCCTCACATTTCAGCTGTTGGATTTGTACTAGAAGGTGAAAATGTTTGGGTTTAGAAAAGCACCAGCACCAACTGAATCAGATAAGAAGACAACCCTTACTGCAGAAAAAAGAACTACTTCAGAACCTGTCCTGCCAGTTGCAAAATCTAAAGGAAACTATTTCGACGATGACGACGACGACTGGGGGAGGAAGCCTTCCTCCTCCACAGCATCAAAGGACAAAGACAGGTACAAGAATGGTTTCAGCAACTCTGGGGGGCTAGAGAACCAAAGTGTTCAGGAGTTGGAAAACTATGCAGTGTACAAGTCTGAGGAGACAACAAACAGTGTCAACAATTGTTTAAGGATTGCTGAGGACATCAGAGGGGATGCCACAAGGACACTTGACATGTTGCATCAGCAGGGTGAGCAGATAACCAGAACTCACAATATGGTTGTTGATACCGAGAAGGATTTGAGCCGGGGTGAAAAACTCCTAAACAATCTTGGTGGCATGTTCTCCAAACCCTGGAAGCCAAAGAAAACCAGAGAAATCCAAGGACCTATAATTACACCAGATAAGCCATCCAAAAAGAATGTACATAATAAGGAAGACAGAGAGAAGTTGGGCTTAGCTCCTTTGCCTAAGGGACGCTCAGCCCCTACCACACCTCCAAATGAATCATCCAATGCCTATCAGAAAGTTGAACATGAGAAAGCTAAACAAGACGATGCACTCGAAGATCTAAGTGGCATCTTAGGTGATTTGAAGGGTATGGCAATTGGCATGGGATCTGAACTTGACAAGCAAAACAAAGCTCTTGATCATCTTGGTGACGATGTGGATGAGTTGAATTCTCGAGTCAAAGGTGCCAACCAGCGTGCACGCAAATTAGTAGGGTGAAGTGAGTGACAGATGATAGACTTACATTGTTGCTCAGTTGAATTTTTTTCATTTATTGTTTGTGATTCATTTGTATGTTTTAAGATTTTCCACATCACTGTGTTACTGAAAGCATTTGGCAAATGATGGAGATATTGTTCCTATTTGAAATTGTTCTTGTAATGTTCTTTTGAACAGCAGCAAAAAAAAAGTTGGCGTAGTTTAGAAAAATATAATATAATCTAGTTTCGGTG
>Glyma02g12821.1 sequence type=CDS gene model=Glyma02g12821 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTGGGTTTAGAAAAGCACCAGCACCAACTGAATCAGATAAGAAGACAACCCTTACTGCAGAAAAAAGAACTACTTCAGAACCTGTCCTGCCAGTTGCAAAATCTAAAGGAAACTATTTCGACGATGACGACGACGACTGGGGGAGGAAGCCTTCCTCCTCCACAGCATCAAAGGACAAAGACAGGTACAAGAATGGTTTCAGCAACTCTGGGGGGCTAGAGAACCAAAGTGTTCAGGAGTTGGAAAACTATGCAGTGTACAAGTCTGAGGAGACAACAAACAGTGTCAACAATTGTTTAAGGATTGCTGAGGACATCAGAGGGGATGCCACAAGGACACTTGACATGTTGCATCAGCAGGGTGAGCAGATAACCAGAACTCACAATATGGTTGTTGATACCGAGAAGGATTTGAGCCGGGGTGAAAAACTCCTAAACAATCTTGGTGGCATGTTCTCCAAACCCTGGAAGCCAAAGAAAACCAGAGAAATCCAAGGACCTATAATTACACCAGATAAGCCATCCAAAAAGAATGTACATAATAAGGAAGACAGAGAGAAGTTGGGCTTAGCTCCTTTGCCTAAGGGACGCTCAGCCCCTACCACACCTCCAAATGAATCATCCAATGCCTATCAGAAAGTTGAACATGAGAAAGCTAAACAAGACGATGCACTCGAAGATCTAAGTGGCATCTTAGGTGATTTGAAGGGTATGGCAATTGGCATGGGATCTGAACTTGACAAGCAAAACAAAGCTCTTGATCATCTTGGTGACGATGTGGATGAGTTGAATTCTCGAGTCAAAGGTGCCAACCAGCGTGCACGCAAATTAGTAGGGTGA >Glyma02g12821.2 sequence type=CDS gene model=Glyma02g12821 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTGGGTTTAGAAAAGCACCAGCACCAACTGAATCAGATAAGAAGACAACCCTTACTGCAGAAAAAAGAACTACTTCAGAACCTGTCCTGCCAGTTGCAAAATCTAAAGGAAACTATTTCGACGATGACGACGACGACTGGGGGAGGAAGCCTTCCTCCTCCACAGCATCAAAGGACAAAGACAGGTACAAGAATGGTTTCAGCAACTCTGGGGGGCTAGAGAACCAAAGTGTTCAGGAGTTGGAAAACTATGCAGTGTACAAGTCTGAGGAGACAACAAACAGTGTCAACAATTGTTTAAGGATTGCTGAGGACATCAGAGGGGATGCCACAAGGACACTTGACATGTTGCATCAGCAGGGTGAGCAGATAACCAGAACTCACAATATGGTTGTTGATACCGAGAAGGATTTGAGCCGGGGTGAAAAACTCCTAAACAATCTTGGTGGCATGTTCTCCAAACCCTGGAAGCCAAAGAAAACCAGAGAAATCCAAGGACCTATAATTACACCAGATAAGCCATCCAAAAAGAATGTACATAATAAGGAAGACAGAGAGAAGTTGGGCTTAGCTCCTTTGCCTAAGGGACGCTCAGCCCCTACCACACCTCCAAATGAATCATCCAATGCCTATCAGAAAGTTGAACATGAGAAAGCTAAACAAGACGATGCACTCGAAGATCTAAGTGGCATCTTAGGTGATTTGAAGGGTATGGCAATTGGCATGGGATCTGAACTTGACAAGCAAAACAAAGCTCTTGATCATCTTGGTGACGATGTGGATGAGTTGAATTCTCGAGTCAAAGGTGCCAACCAGCGTGCACGCAAATTAGTAGGGTGA
>Glyma02g12821.1 sequence type=predicted peptide gene model=Glyma02g12821 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFGFRKAPAPTESDKKTTLTAEKRTTSEPVLPVAKSKGNYFDDDDDDWGRKPSSSTASKDKDRYKNGFSNSGGLENQSVQELENYAVYKSEETTNSVNNCLRIAEDIRGDATRTLDMLHQQGEQITRTHNMVVDTEKDLSRGEKLLNNLGGMFSKPWKPKKTREIQGPIITPDKPSKKNVHNKEDREKLGLAPLPKGRSAPTTPPNESSNAYQKVEHEKAKQDDALEDLSGILGDLKGMAIGMGSELDKQNKALDHLGDDVDELNSRVKGANQRARKLVG* >Glyma02g12821.2 sequence type=predicted peptide gene model=Glyma02g12821 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFGFRKAPAPTESDKKTTLTAEKRTTSEPVLPVAKSKGNYFDDDDDDWGRKPSSSTASKDKDRYKNGFSNSGGLENQSVQELENYAVYKSEETTNSVNNCLRIAEDIRGDATRTLDMLHQQGEQITRTHNMVVDTEKDLSRGEKLLNNLGGMFSKPWKPKKTREIQGPIITPDKPSKKNVHNKEDREKLGLAPLPKGRSAPTTPPNESSNAYQKVEHEKAKQDDALEDLSGILGDLKGMAIGMGSELDKQNKALDHLGDDVDELNSRVKGANQRARKLVG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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