SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G15460 | AT | Annotation by Michelle Graham. TAIR10: Ribosomal RNA processing Brix domain protein | chr3:5214279-5216188 REVERSE LENGTH=315 | SoyBase | E_val: 0 | ISS |
| GO:0001510 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA methylation | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009220 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2971 | KOG | RNA-binding protein required for biogenesis of the ribosomal 60S subunit | JGI | ISS | |
| PTHR13634 | Panther | RIBOSOME BIOGENESIS PROTEIN BRIX | JGI | ISS | |
| PF04427 | PFAM | Brix domain | JGI | ISS | |
| UniRef100_C6TA61 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TA61_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_G7KSA6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ribosome biogenesis protein BRX1-like protein n=1 Tax=Medicago truncatula RepID=G7KSA6_MEDTR | SoyBase | E_val: 0 | ISS |
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Glyma02g12700 not represented in the dataset |
Glyma02g12700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g114000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g12700.5 sequence type=transcript gene model=Glyma02g12700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TAAGAATCTAAACTCGACCTAGTGACATTCCCTCGCTTCTGGCTCCCGCTGTGTGCTCTGCTTCACACTACTGGGATACCAAAGATACCCGTAGATCATCAGAGAAAAATTCAATTGAAGAAGAGGTTGAAACTTAAACTGCTGAAACGCAAAGATTTTCTAGCAAAAAATGGGGAAGAAGAGAAAGCACAGTGAGACAACTCATGATGAGGCACAGCCCCAAAAGGAAGATGTCGCTCCAGGGAGACCAGCTAGGACCCTTTTGGGGTGGAAGGATAAGAATGAAGTCACTGATGAAGTTGAGGATAATTCACCTATATTTAGGAACAGAGAGAAGGTATTGGTCACTTGCTCTAGGCGCATTAATTACAGGTACCGACATTTGATGTTGAATGTGGTGTCACTTTTGCCTCATTGCAAGAAGGAAAACAAGGTTGAATCAAAGGAAACTAAAGGCGCCACCCTGAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAGTGCAGGAAGCAAAAAGATCTTTATCTCTGGATAGCAAAATGCCCCAATGGCCCATCTGTAAAATTTTTAGTTAGTGCTGTGCACACAATGGAGGAATTGAAGCTAACTGGAAATCAACTAAAAGGTTCTCGTCCTATTTTGACATTTTCAGCAAATTTTGAAAAAGATGCACATTGGAAACTGCTAAAGGAGATGTTGTTACAGATATTTGAAACACCAAAGGACCTAAGAAGGACTAAGCCATTCCATGATCACGTTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTTCGGAATTACCAGATCTCTGTTCCTCATAATGAGTCAGACAAATTACCTAGAGGAGGCCTTGATAAAATGTCAATGATCGAGGTTGGTCCGCGATTCTGCTTGAACCCAATTAAAATATTTGGTGGAAGTTTTGGAGGGCCAACTTTATATGAGAATCCATTCTATGTGTCCCCAAATCAGATTCGAACTTTGGATAAAAGGAAGAAGACTGGAAAGTTCGCAAAGAAAGTCAAAGCAAAGACAAGGAGGAAAATGCATGAGATGTCTAATCCTCTGGAGCCTGATGAGTTTGCAGATATGTGGAAAGATTGATTCTATATCCAACTGCCCAAGTTCATGTTCACTTCCATCAATCTCAAACAATTGCCTGCATTCATTCTCAAGCTCAATGCTCTCACCCTCAACAAGAAGTAGTTACTCATTGTTTGGAGGACTTTCATCTTTATGGAATTGTTTTTTTTGAATTCAATATAAGATATAAGTATTTTGAGTATGCATTGAAATTGACAACAGATAGAAATACCTTGATTACCAAGCTTGTTATTGCCAAATTGGAATTTTTATATTGCCAACCAATCTGAAGTTTCTTTTATTTGTTCCATACACAATCATAATCCTCTCTATCCACGACCCTCTCACAATATACCGTAATTATATTTGGAGCAATACTCAGC >Glyma02g12700.6 sequence type=transcript gene model=Glyma02g12700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TAAGAATCTAAACTCGACCTAGTGACATTCCCTCGCTTCTGGCTCCCGCTGTGTGCTCTGCTTCACACTACTGTATCTCATCCACTCCCTATCGCTGCAATTTGGGATACCAAAGATACCCGTAGATCATCAGAGAAAAATTCAATTGAAGAAGAGGTTGAAACTTAAACTGCTGAAACGCAAAGGTAAGTCTATTACGCATATAATTTCAGTACCATTTTTGTTATATGATTTTGGTTCTTGGGGTCAGTACCATTTTTGTTATATGATTTTGGTTCTTGGGTATGGCAGATTTTCTAGCAAAAAATGGGGAAGAAGAGAAAGCACAGTGAGACAACTCATGATGAGGCACAGCCCCAAAAGGAAGATGTCGCTCCAGGGAGACCAGCTAGGACCCTTTTGGGGTGGAAGGATAAGAATGAAGTCACTGATGAAGTTGAGGATAATTCACCTATATTTAGGAACAGAGAGAAGGTATTGGTCACTTGCTCTAGGCGCATTAATTACAGGTACCGACATTTGATGTTGAATGTGGTGTCACTTTTGCCTCATTGCAAGAAGGAAAACAAGGTTGAATCAAAGGAAACTAAAGGCGCCACCCTGAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAGTGCAGGAAGCAAAAAGATCTTTATCTCTGGATAGCAAAATGCCCCAATGGCCCATCTGTAAAATTTTTAGTTAGTGCTGTGCACACAATGGAGGAATTGAAGCTAACTGGAAATCAACTAAAAGGTTCTCGTCCTATTTTGACATTTTCAGCAAATTTTGAAAAAGATGCACATTGGAAACTGCTAAAGGAGATGTTGTTACAGATATTTGAAACACCAAAGGACCTAAGAAGGACTAAGCCATTCCATGATCACGTTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTTCGGAATTACCAGATCTCTGTTCCTCATAATGAGTCAGACAAATTACCTAGAGGAGGCCTTGATAAAATGTCAATGATCGAGGTTGGTCCGCGATTCTGCTTGAACCCAATTAAAATATTTGGTGGAAGTTTTGGAGGGCCAACTTTATATGAGAATCCATTCTATGTGTCCCCAAATCAGATTCGAACTTTGGATAAAAGGAAGAAGACTGGAAAGTTCGCAAAGAAAGTCAAAGCAAAGACAAGGAGGAAAATGCATGAGATGTCTAATCCTCTGGAGCCTGATGAGTTTGCAGATATGTGGAAAGATTGATTCTATATCCAACTGCCCAAGTTCATGTTCACTTCCATCAATCTCAAACAATTGCCTGCATTCATTCTCAAGCTCAATGCTCTCACCCTCAACAAGAAGTAGTTACTCATTGTTTGGAGGACTTTCATCTTTATGGAATTGTTTTTTTTGAATTCAATATAAGATATAAGTATTTTGAGTATGCATTGAAATTGACAACAGATAGAAATACCTTGATTACCAAGCTTGTTATTGCCAAATTGGAATTTTTATATTGCCAACCAATCTGAAGTTTCTTTTATTTGTTCCATACACAATCATAATCCTCTCTATCCACGACCCTCTCACAATATACCGTAATTATATTTGGAGCAATACTCAGC
>Glyma02g12700.4 sequence type=CDS gene model=Glyma02g12700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGAAGAAGAGAAAGCACAGTGAGACAACTCATGATGAGGCACAGCCCCAAAAGGAAGATGTCGCTCCAGGGAGACCAGCTAGGACCCTTTTGGGGTGGAAGGATAAGAATGAAGTCACTGATGAAGTTGAGGATAATTCACCTATATTTAGGAACAGAGAGAAGGTATTGGTCACTTGCTCTAGGCGCATTAATTACAGGTACCGACATTTGATGTTGAATGTGGTGTCACTTTTGCCTCATTGCAAGAAGGAAAACAAGGTTGAATCAAAGGAAACTAAAGGCGCCACCCTGAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAGTGCAGGAAGCAAAAAGATCTTTATCTCTGGATAGCAAAATGCCCCAATGGCCCATCTGTAAAATTTTTAGTTAGTGCTGTGCACACAATGGAGGAATTGAAGCTAACTGGAAATCAACTAAAAGGTTCTCGTCCTATTTTGACATTTTCAGCAAATTTTGAAAAAGATGCACATTGGAAACTGCTAAAGGAGATGTTGTTACAGATATTTGAAACACCAAAGGACCTAAGAAGGACTAAGCCATTCCATGATCACGTTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTTCGGAATTACCAGATCTCTGTTCCTCATAATGAGTCAGACAAATTACCTAGAGGAGGCCTTGATAAAATGTCAATGATCGAGGTTGGTCCGCGATTCTGCTTGAACCCAATTAAAATATTTGGTGGAAGTTTTGGAGGGCCAACTTTATATGAGAATCCATTCTATGTGTCCCCAAATCAGATTCGAACTTTGGATAAAAGGAAGAAGACTGGAAAGTTCGCAAAGAAAGTCAAAGCAAAGACAAGGAGGAAAATGCATGAGATGTCTAATCCTCTGGAGCCTGATGAGTTTGCAGATATGTGGAAAGATTGA >Glyma02g12700.5 sequence type=CDS gene model=Glyma02g12700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGAAGAAGAGAAAGCACAGTGAGACAACTCATGATGAGGCACAGCCCCAAAAGGAAGATGTCGCTCCAGGGAGACCAGCTAGGACCCTTTTGGGGTGGAAGGATAAGAATGAAGTCACTGATGAAGTTGAGGATAATTCACCTATATTTAGGAACAGAGAGAAGGTATTGGTCACTTGCTCTAGGCGCATTAATTACAGGTACCGACATTTGATGTTGAATGTGGTGTCACTTTTGCCTCATTGCAAGAAGGAAAACAAGGTTGAATCAAAGGAAACTAAAGGCGCCACCCTGAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAGTGCAGGAAGCAAAAAGATCTTTATCTCTGGATAGCAAAATGCCCCAATGGCCCATCTGTAAAATTTTTAGTTAGTGCTGTGCACACAATGGAGGAATTGAAGCTAACTGGAAATCAACTAAAAGGTTCTCGTCCTATTTTGACATTTTCAGCAAATTTTGAAAAAGATGCACATTGGAAACTGCTAAAGGAGATGTTGTTACAGATATTTGAAACACCAAAGGACCTAAGAAGGACTAAGCCATTCCATGATCACGTTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTTCGGAATTACCAGATCTCTGTTCCTCATAATGAGTCAGACAAATTACCTAGAGGAGGCCTTGATAAAATGTCAATGATCGAGGTTGGTCCGCGATTCTGCTTGAACCCAATTAAAATATTTGGTGGAAGTTTTGGAGGGCCAACTTTATATGAGAATCCATTCTATGTGTCCCCAAATCAGATTCGAACTTTGGATAAAAGGAAGAAGACTGGAAAGTTCGCAAAGAAAGTCAAAGCAAAGACAAGGAGGAAAATGCATGAGATGTCTAATCCTCTGGAGCCTGATGAGTTTGCAGATATGTGGAAAGATTGA >Glyma02g12700.6 sequence type=CDS gene model=Glyma02g12700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGAAGAAGAGAAAGCACAGTGAGACAACTCATGATGAGGCACAGCCCCAAAAGGAAGATGTCGCTCCAGGGAGACCAGCTAGGACCCTTTTGGGGTGGAAGGATAAGAATGAAGTCACTGATGAAGTTGAGGATAATTCACCTATATTTAGGAACAGAGAGAAGGTATTGGTCACTTGCTCTAGGCGCATTAATTACAGGTACCGACATTTGATGTTGAATGTGGTGTCACTTTTGCCTCATTGCAAGAAGGAAAACAAGGTTGAATCAAAGGAAACTAAAGGCGCCACCCTGAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAGTGCAGGAAGCAAAAAGATCTTTATCTCTGGATAGCAAAATGCCCCAATGGCCCATCTGTAAAATTTTTAGTTAGTGCTGTGCACACAATGGAGGAATTGAAGCTAACTGGAAATCAACTAAAAGGTTCTCGTCCTATTTTGACATTTTCAGCAAATTTTGAAAAAGATGCACATTGGAAACTGCTAAAGGAGATGTTGTTACAGATATTTGAAACACCAAAGGACCTAAGAAGGACTAAGCCATTCCATGATCACGTTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTTCGGAATTACCAGATCTCTGTTCCTCATAATGAGTCAGACAAATTACCTAGAGGAGGCCTTGATAAAATGTCAATGATCGAGGTTGGTCCGCGATTCTGCTTGAACCCAATTAAAATATTTGGTGGAAGTTTTGGAGGGCCAACTTTATATGAGAATCCATTCTATGTGTCCCCAAATCAGATTCGAACTTTGGATAAAAGGAAGAAGACTGGAAAGTTCGCAAAGAAAGTCAAAGCAAAGACAAGGAGGAAAATGCATGAGATGTCTAATCCTCTGGAGCCTGATGAGTTTGCAGATATGTGGAAAGATTGA
>Glyma02g12700.4 sequence type=predicted peptide gene model=Glyma02g12700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGKKRKHSETTHDEAQPQKEDVAPGRPARTLLGWKDKNEVTDEVEDNSPIFRNREKVLVTCSRRINYRYRHLMLNVVSLLPHCKKENKVESKETKGATLNELVELKNCSSCLFFECRKQKDLYLWIAKCPNGPSVKFLVSAVHTMEELKLTGNQLKGSRPILTFSANFEKDAHWKLLKEMLLQIFETPKDLRRTKPFHDHVFVFSIVDDHIWFRNYQISVPHNESDKLPRGGLDKMSMIEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRTLDKRKKTGKFAKKVKAKTRRKMHEMSNPLEPDEFADMWKD* >Glyma02g12700.5 sequence type=predicted peptide gene model=Glyma02g12700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGKKRKHSETTHDEAQPQKEDVAPGRPARTLLGWKDKNEVTDEVEDNSPIFRNREKVLVTCSRRINYRYRHLMLNVVSLLPHCKKENKVESKETKGATLNELVELKNCSSCLFFECRKQKDLYLWIAKCPNGPSVKFLVSAVHTMEELKLTGNQLKGSRPILTFSANFEKDAHWKLLKEMLLQIFETPKDLRRTKPFHDHVFVFSIVDDHIWFRNYQISVPHNESDKLPRGGLDKMSMIEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRTLDKRKKTGKFAKKVKAKTRRKMHEMSNPLEPDEFADMWKD* >Glyma02g12700.6 sequence type=predicted peptide gene model=Glyma02g12700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGKKRKHSETTHDEAQPQKEDVAPGRPARTLLGWKDKNEVTDEVEDNSPIFRNREKVLVTCSRRINYRYRHLMLNVVSLLPHCKKENKVESKETKGATLNELVELKNCSSCLFFECRKQKDLYLWIAKCPNGPSVKFLVSAVHTMEELKLTGNQLKGSRPILTFSANFEKDAHWKLLKEMLLQIFETPKDLRRTKPFHDHVFVFSIVDDHIWFRNYQISVPHNESDKLPRGGLDKMSMIEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRTLDKRKKTGKFAKKVKAKTRRKMHEMSNPLEPDEFADMWKD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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