SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G03430 | AT | Annotation by Michelle Graham. TAIR10: Ankyrin repeat family protein | chr2:1036192-1037536 REVERSE LENGTH=240 | SoyBase | E_val: 5.00E-120 | ISS |
| GO:0000724 | GO-bp | Annotation by Michelle Graham. GO Biological Process: double-strand break repair via homologous recombination | SoyBase | N/A | ISS |
| GO:0006259 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA metabolic process | SoyBase | N/A | ISS |
| GO:0007059 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromosome segregation | SoyBase | N/A | ISS |
| GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
| GO:0007129 | GO-bp | Annotation by Michelle Graham. GO Biological Process: synapsis | SoyBase | N/A | ISS |
| GO:0007131 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination | SoyBase | N/A | ISS |
| GO:0007140 | GO-bp | Annotation by Michelle Graham. GO Biological Process: male meiosis | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0010332 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to gamma radiation | SoyBase | N/A | ISS |
| GO:0016444 | GO-bp | Annotation by Michelle Graham. GO Biological Process: somatic cell DNA recombination | SoyBase | N/A | ISS |
| GO:0032204 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of telomere maintenance | SoyBase | N/A | ISS |
| GO:0032504 | GO-bp | Annotation by Michelle Graham. GO Biological Process: multicellular organism reproduction | SoyBase | N/A | ISS |
| GO:0033044 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization | SoyBase | N/A | ISS |
| GO:0042023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication | SoyBase | N/A | ISS |
| GO:0042138 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation | SoyBase | N/A | ISS |
| GO:0043161 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0043247 | GO-bp | Annotation by Michelle Graham. GO Biological Process: telomere maintenance in response to DNA damage | SoyBase | N/A | ISS |
| GO:0043248 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasome assembly | SoyBase | N/A | ISS |
| GO:0045132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation | SoyBase | N/A | ISS |
| GO:0051510 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth | SoyBase | N/A | ISS |
| GO:0051788 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to misfolded protein | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| KOG4412 | KOG | 26S proteasome regulatory complex, subunit PSMD10 | JGI | ISS | |
| PTHR24199 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24199:SF294 | Panther | JGI | ISS | ||
| PF00023 | PFAM | Ankyrin repeat | JGI | ISS | |
| UniRef100_G7JXW1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ankyrin repeat domain-containing protein n=1 Tax=Medicago truncatula RepID=G7JXW1_MEDTR | SoyBase | E_val: 3.00E-131 | ISS |
| UniRef100_I1JEB4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JEB4_SOYBN | SoyBase | E_val: 2.00E-173 | ISS |
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Glyma02g12690 not represented in the dataset |
Glyma02g12690 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g06750 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g113900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g12690.1 sequence type=CDS gene model=Glyma02g12690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGATGGAAGTAGACATCGAGAAGAAGCAACAAGACGTGGTGAAAGAGAAAGACTTGTTCAAAGCTGCAGAAGAGGGCGAGGCATCAACGTTCGAAGCTCTCTCTTCTGAAATCCTCTCCAAAGCCCTCTCTCTCAGAAACGAAGACGCTCGTTCCCTTCTCCACGTCGCAGCTTCTTCCGGTCACTCCCAGGTAGTGAAGATAGTGTTGTCTTGTGATGCATCTGCTGGTGTGGTGAATTGTGCTGATGAGGAAGGGTGGGCGCCGCTTCACTCTGCAGCCAGCATTGGGAGTGTGGAGATAGTGGAGACTCTATTGAGCAAAGGAGCTGATGTTAATCTGAAAAATAATGGGGGTCGTGCTGCTCTACACTATGCGGCCAGCAAAGGTTGGGTGAAGATTGCTGAAATGCTCATCTCCCATGATGCCAAGATTAATATAAAGGATAAGGTTGGTTGCACTCCATTGCATCGGGCAGCTAGCACTGGGAAATCTGAGCTGTGTGAACTTTTGATTGAAGAAGGAGCAGAGGTTGATGCTGTTGATAGAGCTGGTCAAACTCCTCTAATGAATGCTGTGATTTGCTATAACAAAGAGGTAGCCCTTCTTCTGATAAGACATGGAGCAGATGTGGATGTGGAGGACAAGGAAGGGTACACGGTGCTTGGTCGAGCCACGCATGAGTTTAGACCAATATTAATTGATGCTGCCAAGGCCATGCTTGAGTGA
>Glyma02g12690.1 sequence type=predicted peptide gene model=Glyma02g12690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEMEVDIEKKQQDVVKEKDLFKAAEEGEASTFEALSSEILSKALSLRNEDARSLLHVAASSGHSQVVKIVLSCDASAGVVNCADEEGWAPLHSAASIGSVEIVETLLSKGADVNLKNNGGRAALHYAASKGWVKIAEMLISHDAKINIKDKVGCTPLHRAASTGKSELCELLIEEGAEVDAVDRAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRATHEFRPILIDAAKAMLE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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