SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G69370 | AT | Annotation by Michelle Graham. TAIR10: chorismate mutase 3 | chr1:26080098-26081559 FORWARD LENGTH=316 | SoyBase | E_val: 6.00E-121 | ISS |
| GO:0000162 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tryptophan biosynthetic process | SoyBase | N/A | ISS |
| GO:0009073 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family biosynthetic process | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0046417 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chorismate metabolic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0004106 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: chorismate mutase activity | SoyBase | N/A | ISS |
| KOG0795 | KOG | Chorismate mutase | JGI | ISS | |
| PTHR21145 | Panther | CHORISMATE MUTASE | JGI | ISS | |
| UniRef100_G7JWQ4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Chorismate mutase n=1 Tax=Medicago truncatula RepID=G7JWQ4_MEDTR | SoyBase | E_val: 3.00E-119 | ISS |
| UniRef100_I1JEA5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JEA5_SOYBN | SoyBase | E_val: 1.00E-143 | ISS |
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Glyma02g12603 not represented in the dataset |
Glyma02g12603 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g06660 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g113100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g12603.2 sequence type=transcript gene model=Glyma02g12603 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTTTGTGTCGGCAAAAGATTTTTCAGCACCGCTTCAAGTGTTGTGTCAGTTGTGTCAGTCACTGTCGCTGTCGGCTTTTGCAGAAAACAATGGAAGCAGTGTTACGGTTGCATCAGCCCCACCTTGGATTTGGAAGCAGACCCATAACCTATTTTTCTTCGAAATCCACCATTTTTCACCGCCAAAACTCTCTTTCCATAAAAAGGTGCCAAGTTCGAGTCATTGCTGCTTCTTCTTCTCCTTCTCCTTCCTTTCCATTCGGAGATTCAGGTAAAAAGAGGGTGGATGAGAGCAAGATCTTGATTTTAGACGGCATCAGGCACTCTTTGATTAGGGAAGAGGATAGCATAATAGTCAGTCTTTTGGAGAGAGCTAAGTATTCTTACAATGCAAATGCGTATGACAAAGATGCATTCCTCGTGGACGGTTTTAGCGGGTCTTTGGTCGAGTACATGGTCCTGGAAACTGAAAAGCTTCATGCACAGTTGGGAATATACAAAAAGCCAGATGAGCATCCTTTCTTCCCTGAATACTTACCTGAGCCAATGATTCCACCTATGCAGCACCCTCAGGTTCTGCATCACTGTGGTGATTCCATCAATATAAACAATACGATTTGGAATATGTATTTTAAGCATCTCCTCCCAAGACTGGTAAAAGCAGGAAATGATGATAACTGTGGATGTGTTGCTGCTTGTGACATTCTTTGCTTGCAGTGTAAGAGCTTCACCACCATTATTACAGACTATCTCTAAAAGAATCCACTATGGAAAATTTGTTGCTGAGGCGAAGTTTCAAGATGCTCCTCATGAATATGAAGCCGCCATTAAAGCGAGAGACAGGAAACTGTTGCTGGAGTTGTTGACATATGAAACAGTGGATAAATTTGTCAAGAAGAGAGTAGAAATTATGGCACAGCAATATGCCGCGGTGGAGAAGATCGGTGAAACAGGCTATATACCCAATTCTGTGTATAGAATAAATCCAAGTTTGATTGCAGATCTTTATGGAGATTGGGTAATGCCTCTTGCAAAAGAAGTGCAGGTGGAATACTTGTTGAGAAGACTTGACTAAACAAACAGAAGATGACCCTAACAGAATAAATGGCAGAGTGTTTGTACCTATCAATTATGAAGATAGTTTATGCTCAAGTCAAACAGTGAATAAAAAGAAGGACAAGGGTCCCTGCATATAAATAAGTGTACTTAAAAAATAAAAACATCAAATAATGTATGGATTGTATGCTTATCTAAAAGTTTAGGCTTAACAGATATATATATTGTTCAATGCCTCCCAATTATGCAGTTGATAATATGTAATATCAAGTCGATGTGGGTTGGCATTTATTAAGGATCCGGTACAAACTCTCACTTTTTTTTATGGGTGTGGATTCAAATTCGTTTGATGTCACTTTTCCGCTTAACAGGCAACCTTCTCCAAG
>Glyma02g12603.1 sequence type=CDS gene model=Glyma02g12603 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTTTGTGTCGGCAAAAGATTTTTCAGCACCGCTTCAAGTGTTGTGTCAGTTGTGTCAGTCACTGTCGCTGTCGGCTTTTGCAGAAAACAATGGAAGCAGTGTTACGGTTGCATCAGCCCCACCTTGGATTTGGAAGCAGACCCATAACCTATTTTTCTTCGAAATCCACCATTTTTCACCGCCAAAACTCTCTTTCCATAAAAAGGTGCCAAGTTCGAGTCATTGCTGCTTCTTCTTCTCCTTCTCCTTCCTTTCCATTCGGAGATTCAGGTAAAAAGAGGGTGGATGAGAGCAAGATCTTGATTTTAGACGGCATCAGGCACTCTTTGATTAGGGAAGAGGATAGCATAATAGTCAGTCTTTTGGAGAGAGCTAAGTATTCTTACAATGCAAATGCGTATGACAAAGATGCATTCCTCGTGGACGGTTTTAGCGGGTCTTTGGTCGAGTACATGGTCCTGGAAACTGAAAAGCTTCATGCACAGTTGGGAATATACAAAAAGCCAGATGAGCATCCTTTCTTCCCTGAATACTTACCTGAGCCAATGATTCCACCTATGCAGCACCCTCAGGTTCTGCATCACTGTGGTGATTCCATCAATATAAACAATACGATTTGGAATATGTATTTTAAGCATCTCCTCCCAAGACTGGTAAAAGCAGGAAATGATGATAACTGTGGATGTGTTGCTGCTTGTGACATTCTTTGCTTGCAGACTATCTCTAAAAGAATCCACTATGGAAAATTTGTTGCTGAGGCGAAGTTTCAAGATGCTCCTCATGAATATGAAGCCGCCATTAAAGCGAGAGACAGGAAACTGTTGCTGGAGTTGTTGACATATGAAACAGTGGATAAATTTGTCAAGAAGAGAGTAGAAATTATGGCACAGCAATATGCCGCGGTGGAGAAGATCGGTGAAACAGGCTATATACCCAATTCTGTGTATAGAATAAATCCAAGTTTGATTGCAGATCTTTATGGAGATTGGGTAATGCCTCTTGCAAAAGAAGTGCAGGTGGAATACTTGTTGAGAAGACTTGACTAA >Glyma02g12603.2 sequence type=CDS gene model=Glyma02g12603 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTTTGTGTCGGCAAAAGATTTTTCAGCACCGCTTCAAGTGTTGTGTCAGTTGTGTCAGTCACTGTCGCTGTCGGCTTTTGCAGAAAACAATGGAAGCAGTGTTACGGTTGCATCAGCCCCACCTTGGATTTGGAAGCAGACCCATAACCTATTTTTCTTCGAAATCCACCATTTTTCACCGCCAAAACTCTCTTTCCATAAAAAGGTGCCAAGTTCGAGTCATTGCTGCTTCTTCTTCTCCTTCTCCTTCCTTTCCATTCGGAGATTCAGGTAAAAAGAGGGTGGATGAGAGCAAGATCTTGATTTTAGACGGCATCAGGCACTCTTTGATTAGGGAAGAGGATAGCATAATAGTCAGTCTTTTGGAGAGAGCTAAGTATTCTTACAATGCAAATGCGTATGACAAAGATGCATTCCTCGTGGACGGTTTTAGCGGGTCTTTGGTCGAGTACATGGTCCTGGAAACTGAAAAGCTTCATGCACAGTTGGGAATATACAAAAAGCCAGATGAGCATCCTTTCTTCCCTGAATACTTACCTGAGCCAATGATTCCACCTATGCAGCACCCTCAGGTTCTGCATCACTGTGGTGATTCCATCAATATAAACAATACGATTTGGAATATGTATTTTAAGCATCTCCTCCCAAGACTGGTAAAAGCAGGAAATGATGATAACTGTGGATGTGTTGCTGCTTGTGACATTCTTTGCTTGCAGTGTAAGAGCTTCACCACCATTATTACAGACTATCTCTAA
>Glyma02g12603.1 sequence type=predicted peptide gene model=Glyma02g12603 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ILCRQKIFQHRFKCCVSCVSHCRCRLLQKTMEAVLRLHQPHLGFGSRPITYFSSKSTIFHRQNSLSIKRCQVRVIAASSSPSPSFPFGDSGKKRVDESKILILDGIRHSLIREEDSIIVSLLERAKYSYNANAYDKDAFLVDGFSGSLVEYMVLETEKLHAQLGIYKKPDEHPFFPEYLPEPMIPPMQHPQVLHHCGDSININNTIWNMYFKHLLPRLVKAGNDDNCGCVAACDILCLQTISKRIHYGKFVAEAKFQDAPHEYEAAIKARDRKLLLELLTYETVDKFVKKRVEIMAQQYAAVEKIGETGYIPNSVYRINPSLIADLYGDWVMPLAKEVQVEYLLRRLD* >Glyma02g12603.2 sequence type=predicted peptide gene model=Glyma02g12603 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ILCRQKIFQHRFKCCVSCVSHCRCRLLQKTMEAVLRLHQPHLGFGSRPITYFSSKSTIFHRQNSLSIKRCQVRVIAASSSPSPSFPFGDSGKKRVDESKILILDGIRHSLIREEDSIIVSLLERAKYSYNANAYDKDAFLVDGFSGSLVEYMVLETEKLHAQLGIYKKPDEHPFFPEYLPEPMIPPMQHPQVLHHCGDSININNTIWNMYFKHLLPRLVKAGNDDNCGCVAACDILCLQCKSFTTIITDYL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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