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Report for Sequence Feature Glyma02g12586

Feature Type:gene_model
Chromosome:Gm02
Start:10846684
stop:10848443
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g12586
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G69370AT Annotation by Michelle Graham. TAIR10: chorismate mutase 3 | chr1:26080098-26081559 FORWARD LENGTH=316 SoyBaseE_val: 8.00E-43ISS
GO:0000162GO-bp Annotation by Michelle Graham. GO Biological Process: tryptophan biosynthetic process SoyBaseN/AISS
GO:0009073GO-bp Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family biosynthetic process SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0046417GO-bp Annotation by Michelle Graham. GO Biological Process: chorismate metabolic process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0004106GO-mf Annotation by Michelle Graham. GO Molecular Function: chorismate mutase activity SoyBaseN/AISS
PTHR21145Panther CHORISMATE MUTASE JGI ISS
UniRef100_B9HXM7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Chorismate mutase n=1 Tax=Populus trichocarpa RepID=B9HXM7_POPTR SoyBaseE_val: 4.00E-42ISS
UniRef100_UPI0002337981UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002337981 related cluster n=1 Tax=unknown RepID=UPI0002337981 SoyBaseE_val: 9.00E-51ISS

Expression Patterns of Glyma02g12586
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g12586 not represented in the dataset
Glyma02g12586 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g12586 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma02g12586
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g12586
>Glyma02g12586.1   sequence type=CDS   gene model=Glyma02g12586   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTCTGCGCCACTCGGCTGATTCCATCAATATAAACAATAAGATTTGGAATATCTATTTTAAGGATATCCTCCCAAGATTGGTAAAAGCAGGAGATGATGATAACTGTGGATCTGTTACTGTTTGTGACACTCTTTGCTTGCAGGACAGGAAACTGTTGCTGGTGTTGTTGACATATGAAACAGTGGAGGAATTAGTCAAGAAGAGAGTAGAAATTAAGGCAAGAACATATGGCCAGCCAAGTTTGATTGCAGATCTTTATAGAGATTGGGTTATGCCTCTCACAAAAGAAGTGCAGGTGGAATACTTGTTGAGAAGACTTGACTAG
Predicted protein sequences of Glyma02g12586
>Glyma02g12586.1   sequence type=predicted peptide   gene model=Glyma02g12586   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLRHSADSININNKIWNIYFKDILPRLVKAGDDDNCGSVTVCDTLCLQDRKLLLVLLTYETVEELVKKRVEIKARTYGQPSLIADLYRDWVMPLTKEVQVEYLLRRLD*






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