Glyma02g12530 - SoyBase

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Report for Sequence Feature Glyma02g12530

Feature Type:	gene_model
Chromosome:	Gm02
Start:	10817884
stop:	10825563
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g12530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G69400	AT	Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein \| chr1:26087027-26088806 FORWARD LENGTH=314	SoyBase	E_val: 3.00E-117	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0080008	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG1036	KOG	Mitotic spindle checkpoint protein BUB3, WD repeat superfamily	JGI		ISS
KOG1407	KOG	WD40 repeat protein	JGI		ISS
PTHR10971	Panther	MITOTIC CHECKPOINT PROTEIN AND POLY(A)+ RNA EXPORT PROTEIN	JGI		ISS
PTHR10971:SF5	Panther	POLY(A)+ RNA EXPORT PROTEIN	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_G7JWN6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mitotic checkpoint protein bub3 n=1 Tax=Medicago truncatula RepID=G7JWN6_MEDTR	SoyBase	E_val: 3.00E-164	ISS
UniRef100_I1J5W0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J5W0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g12530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g12530 not represented in the dataset	Glyma02g12530 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g12530

Paralog	Evidence	Comments
Glyma01g06610	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g12530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g112500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g12530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g12530

Limit To All Plant Sequences

>Glyma02g12530.2   sequence type=transcript   gene model=Glyma02g12530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAATCCGAAATTAAACCACATTTTCTATGCCACCACAACAACAGAAGCATTTGTGAGCGGGAGAATTCAAATTTCAGCAAAGAGTTGTTTGTGTTCAGTTTCAAGTGCAAACAAAAAATGAAGGGAAATTGGTCGGAATTGGAGTTGGAGAAGGAATTCGGAGACGCCATTTCCCGAACCCGTTTCGCGCCCCACTCCAACAACCTTCTCATCTCTTCTTGGGACTCCAATCTTCGCCTCTACGACGTCGACGCCTCCCTCCTCAGACTCCAAGCTCCCTCGCAAGCTCCTCTTCTCGATTGCTGCTTCCAGGACGACGCCGTCGCTTTCGCCGCCGCCTCTGATGGACTAATCCGAAGGTATGACTTGCATTCAGGACTTGTTGATACAGTGGGTAGGCACGATGACATGGCAATGTTTATTGGATATTCCAATGAAACATGTCAGTTGGTCACATCCGGATTTGACAAGAAGTTACTGTTATGGGACATGCATACGAAGAAGACTTCTTTATGTTTGAGAAGTCTAGATGCAGAGGTAGACTCCATGTCTGTCTCTGGGTTTAATGTTACCATAGCCATTGGAGCATCAATGCATGTTTATGATTTACGTTACTTTGACCAACCAGTTGAGTCAAAAGAGGCATTCAATGGAACACACTTAAGATGTGTCAGTTCAATTCCAGATGCAGAAGGATTTGCAGTTGGGTCTGTAGATGGACGAGTATCACTGCAGATTTCCTATCCATCCGGTTCAGATGAAATTAGATATATATTCCGGTGTCATCCAAAATCAAAGGATGGAAGGCATTATTTGGTATCAGTGAATGACATTGCATTCAGTCCACTTGTATCCGGTGCTTTTGCCACTGGTGATAATGAAGGTTATGTTACCATATGGGATGCTGGAAGTAGGAGAAGACTAGTTGAGTTGCCCAGATACCCAAATAGTGTTGCATCCTTATCATACAACCACACGGGACAGCTTCTGGCAGTTGCATCAAGCCATACTTACCAAGAAGCAAAGGAAATAGAAAAACCACCTCGTATATTCATCCATAGAGTGGACAGCATTGATATTGGATCAATTTCTGCTAGTAAGAGAAGTTAAAGTACTTATGCTATGCTTGCCAACGAAGATTTGTGTACATCGTCGGAGACACAAGTGGAGGCACCGGTGAAGAAAAAAATAGATGCAATAGTTTTTTAATTCTTTAAAAAAGGAAACAGGGAGATCAAGAACAATATTGGAGCTAAATATTAAAAGAGATTGATCGATAAATAGTATTAGGAGTTTTGATTTTTAGTGGTGTTTAATAGCAGTGTAATTTTGTAACCTAATTCATCTAGTGAGGTAGGGCTGTTCTTTTTTTATTCTCGACAATGCTGTTCTTGATGCAAAATGTATCACGACTTTAAAAAAATTAATTTATGTCTTGTTTGAAAGGAATCGGCATCTAAACAGGAAAGTGACAAACTTACATTTCAATCGAAGTTAAAGGAATATACTCCTTTAGCTCCATGTTTT

>Glyma02g12530.3   sequence type=transcript   gene model=Glyma02g12530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAAAATGTTCATATCATCCTTGGTCTTGGTTAGTGCAGGTCAGTTGGTCACATCCGGATTTGACAAGAAGTTACTGTTATGGGACATGCATACGAAGAAGACTTCTTTATGTTTGAGAAGTCTAGATGCAGAGTTGAGTCAAAAGAGGCATTCAATGGAACACACTTAAGATGTGTCAGTTCAATTCCAGATGCAGAAGGATTTGCAGTTGGGTCTGTAGATGGACGAGTATCACTGCAGATTTCCTATCCATCCGGTTCAGATGAAATTAGATATATATTCCGGTGTCATCCAAAATCAAAGGATGGAAGGCATTATTTGGTATCAGTGAATGACATTGCATTCAGTCCACTTGTATCCGGTGCTTTTGCCACTGGTGATAATGAAGGTTATGTTACCATATGGGATGCTGGAAGTAGGAGAAGACTAGTTGAGTTGCCCAGATACCCAAATAGTGTTGCATCCTTATCATACAACCACACGGGACAGCTTCTGGCAGTTGCATCAAGCCATACTTACCAAGAAGCAAAGGAAATAGAAAAACCACCTCGTATATTCATCCATAGAGTGGACAGCATTGATATTGGATCAATTTCTGCTAGTAAGAGAAGTTAAAGTACTTATGCTATGCTTGCCAACGAAGATTTGTGTACATCGTCGGAGACACAAGTGGAGGCACCGGTGAAGAAAAAAATAGATGCAATAGTTTTTTAATTCTTTAAAAAAGGAAACAGGGAGATCAAGAACAATATTGGAGCTAAATATTAAAAGAGATTGATCGATAAATAGTATTAGGAGTTTTGATTTTTAGTGGTGTTTAATAGCAGTGTAATTTTGTAACCTAATTCATCTAGTGAGGTAGGGCTGTTCTTTTTTTATTCTCGACAATGCTGTTCTTGATGCAAAATGTATCACGACTTTAAAAAAATTAATTTATGTCTTGTTTGAAAGGAATCGGCATCTAAACAGGAAAGTGACAAACTTACATTTCAATCGAAGTTAAAGGAATATACTCCTTTAGCTCCATGTTTT

Coding sequences of Glyma02g12530

Limit To All Plant Sequences

>Glyma02g12530.1   sequence type=CDS   gene model=Glyma02g12530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAATGTTTATTGGATATTCCAATGAAACATGTCAGTTGGTCACATCCGGATTTGACAAGAAGTTACTGTTATGGGACATGCATACGAAGAAGACTTCTTTATGTTTGAGAAGTCTAGATGCAGAGGTAGACTCCATGTCTGTCTCTGGGTTTAATGTTACCATAGCCATTGGAGCATCAATGCATGTTTATGATTTACGTTACTTTGACCAACCAGTTGAGTCAAAAGAGGCATTCAATGGAACACACTTAAGATGTGTCAGTTCAATTCCAGATGCAGAAGGATTTGCAGTTGGGTCTGTAGATGGACGAGTATCACTGCAGATTTCCTATCCATCCGGTTCAGATGAAATTAGATATATATTCCGGTGTCATCCAAAATCAAAGGATGGAAGGCATTATTTGGTATCAGTGAATGACATTGCATTCAGTCCACTTGTATCCGGTGCTTTTGCCACTGGTGATAATGAAGGTTATGTTACCATATGGGATGCTGGAAGTAGGAGAAGACTAGTTGAGTTGCCCAGATACCCAAATAGTGTTGCATCCTTATCATACAACCACACGGGACAGCTTCTGGCAGTTGCATCAAGCCATACTTACCAAGAAGCAAAGGAAATAGAAAAACCACCTCGTATATTCATCCATAGAGTGGACAGCATTGATATTGGATCAATTTCTGCTAGTAAGAGAAGTTAA

>Glyma02g12530.2   sequence type=CDS   gene model=Glyma02g12530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGGAAATTGGTCGGAATTGGAGTTGGAGAAGGAATTCGGAGACGCCATTTCCCGAACCCGTTTCGCGCCCCACTCCAACAACCTTCTCATCTCTTCTTGGGACTCCAATCTTCGCCTCTACGACGTCGACGCCTCCCTCCTCAGACTCCAAGCTCCCTCGCAAGCTCCTCTTCTCGATTGCTGCTTCCAGGACGACGCCGTCGCTTTCGCCGCCGCCTCTGATGGACTAATCCGAAGGTATGACTTGCATTCAGGACTTGTTGATACAGTGGGTAGGCACGATGACATGGCAATGTTTATTGGATATTCCAATGAAACATGTCAGTTGGTCACATCCGGATTTGACAAGAAGTTACTGTTATGGGACATGCATACGAAGAAGACTTCTTTATGTTTGAGAAGTCTAGATGCAGAGGTAGACTCCATGTCTGTCTCTGGGTTTAATGTTACCATAGCCATTGGAGCATCAATGCATGTTTATGATTTACGTTACTTTGACCAACCAGTTGAGTCAAAAGAGGCATTCAATGGAACACACTTAAGATGTGTCAGTTCAATTCCAGATGCAGAAGGATTTGCAGTTGGGTCTGTAGATGGACGAGTATCACTGCAGATTTCCTATCCATCCGGTTCAGATGAAATTAGATATATATTCCGGTGTCATCCAAAATCAAAGGATGGAAGGCATTATTTGGTATCAGTGAATGACATTGCATTCAGTCCACTTGTATCCGGTGCTTTTGCCACTGGTGATAATGAAGGTTATGTTACCATATGGGATGCTGGAAGTAGGAGAAGACTAGTTGAGTTGCCCAGATACCCAAATAGTGTTGCATCCTTATCATACAACCACACGGGACAGCTTCTGGCAGTTGCATCAAGCCATACTTACCAAGAAGCAAAGGAAATAGAAAAACCACCTCGTATATTCATCCATAGAGTGGACAGCATTGATATTGGATCAATTTCTGCTAGTAAGAGAAGTTAA

>Glyma02g12530.3   sequence type=CDS   gene model=Glyma02g12530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGACATGCATACGAAGAAGACTTCTTTATGTTTGAGAAGTCTAGATGCAGAGTTGAGTCAAAAGAGGCATTCAATGGAACACACTTAAGATGTGTCAGTTCAATTCCAGATGCAGAAGGATTTGCAGTTGGGTCTGTAGATGGACGAGTATCACTGCAGATTTCCTATCCATCCGGTTCAGATGAAATTAGATATATATTCCGGTGTCATCCAAAATCAAAGGATGGAAGGCATTATTTGGTATCAGTGAATGACATTGCATTCAGTCCACTTGTATCCGGTGCTTTTGCCACTGGTGATAATGAAGGTTATGTTACCATATGGGATGCTGGAAGTAGGAGAAGACTAGTTGAGTTGCCCAGATACCCAAATAGTGTTGCATCCTTATCATACAACCACACGGGACAGCTTCTGGCAGTTGCATCAAGCCATACTTACCAAGAAGCAAAGGAAATAGAAAAACCACCTCGTATATTCATCCATAGAGTGGACAGCATTGATATTGGATCAATTTCTGCTAGTAAGAGAAGTTAA

Predicted protein sequences of Glyma02g12530

Limit To All Plant Sequences

>Glyma02g12530.1   sequence type=predicted peptide   gene model=Glyma02g12530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMFIGYSNETCQLVTSGFDKKLLLWDMHTKKTSLCLRSLDAEVDSMSVSGFNVTIAIGASMHVYDLRYFDQPVESKEAFNGTHLRCVSSIPDAEGFAVGSVDGRVSLQISYPSGSDEIRYIFRCHPKSKDGRHYLVSVNDIAFSPLVSGAFATGDNEGYVTIWDAGSRRRLVELPRYPNSVASLSYNHTGQLLAVASSHTYQEAKEIEKPPRIFIHRVDSIDIGSISASKRS*

>Glyma02g12530.2   sequence type=predicted peptide   gene model=Glyma02g12530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKGNWSELELEKEFGDAISRTRFAPHSNNLLISSWDSNLRLYDVDASLLRLQAPSQAPLLDCCFQDDAVAFAAASDGLIRRYDLHSGLVDTVGRHDDMAMFIGYSNETCQLVTSGFDKKLLLWDMHTKKTSLCLRSLDAEVDSMSVSGFNVTIAIGASMHVYDLRYFDQPVESKEAFNGTHLRCVSSIPDAEGFAVGSVDGRVSLQISYPSGSDEIRYIFRCHPKSKDGRHYLVSVNDIAFSPLVSGAFATGDNEGYVTIWDAGSRRRLVELPRYPNSVASLSYNHTGQLLAVASSHTYQEAKEIEKPPRIFIHRVDSIDIGSISASKRS*

>Glyma02g12530.3   sequence type=predicted peptide   gene model=Glyma02g12530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGHAYEEDFFMFEKSRCRVESKEAFNGTHLRCVSSIPDAEGFAVGSVDGRVSLQISYPSGSDEIRYIFRCHPKSKDGRHYLVSVNDIAFSPLVSGAFATGDNEGYVTIWDAGSRRRLVELPRYPNSVASLSYNHTGQLLAVASSHTYQEAKEIEKPPRIFIHRVDSIDIGSISASKRS*

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