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Report for Sequence Feature Glyma02g12520

Feature Type:gene_model
Chromosome:Gm02
Start:10813189
stop:10815333
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G13950AT Annotation by Michelle Graham. TAIR10: eukaryotic elongation factor 5A-1 | chr1:4773631-4774668 FORWARD LENGTH=158 SoyBaseE_val: 3.00E-100ISS
GO:0006413GO-bp Annotation by Michelle Graham. GO Biological Process: translational initiation SoyBaseN/AISS
GO:0006452GO-bp Annotation by Michelle Graham. GO Biological Process: translational frameshifting SoyBaseN/AISS
GO:0008612GO-bp Annotation by Michelle Graham. GO Biological Process: peptidyl-lysine modification to hypusine SoyBaseN/AISS
GO:0010089GO-bp Annotation by Michelle Graham. GO Biological Process: xylem development SoyBaseN/AISS
GO:0045901GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of translational elongation SoyBaseN/AISS
GO:0045905GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of translational termination SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
GO:0003743GO-mf Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity SoyBaseN/AISS
GO:0003746GO-mf Annotation by Michelle Graham. GO Molecular Function: translation elongation factor activity SoyBaseN/AISS
GO:0043022GO-mf Annotation by Michelle Graham. GO Molecular Function: ribosome binding SoyBaseN/AISS
KOG3271 KOG Translation initiation factor 5A (eIF-5A) JGI ISS
PTHR11673Panther TRANSLATION INITIATION FACTOR 5A-RELATED JGI ISS
PF00467PFAM KOW motif JGI ISS
PF01287PFAM Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold JGI ISS
UniRef100_C6ZHS3UniRef Annotation by Michelle Graham. Best UniRef hit: Eukaryotic translation initiation factor 5A1 n=1 Tax=Glycine max RepID=C6ZHS3_SOYBN SoyBaseE_val: 1.00E-112ISS
UniRef100_C6ZHS3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic translation initiation factor 5A1 n=1 Tax=Glycine max RepID=C6ZHS3_SOYBN SoyBaseE_val: 1.00E-112ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma01g06600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g112400 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma02g12520.3   sequence type=transcript   gene model=Glyma02g12520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTGGAAAAAAAAATGTTACAATGTTCTTCTCTAGTAGTGTATGTTTATAAAAGGAAAACCAGAAGCATCACACATTATGTTGCGTGTGATGAACCATAACCATGTCAGACGAGGAGCACCACTTCGAGTCAAAGGCTGATGCTGGAGCATCAAAGACATTTCCCCAGCAAGCTGGAACCATCCGCAAAAACGGTTACATTGTCATCAAGAACAGGCCATGCAAGGTTGTGGAGGTTTCAACTTCCAAAACTGGCAAGCATGGACACGCAAAGTGTCACTTTGTTGCAATTGACATCTTCACTGGGAAAAAGCTTGAGGATATTGTCCCATCTTCCCATAACTGTGATGTTCCCCATGTTAATCGCATTGACTACCAGCTCATTGACATCTCAGAGGATGGATTTGTAAGATTTCAGTTGCACTTGTGTCCCTTATTCATTCCCCTTTTCTTTTAAGCTACATCTATGAGATATTGATACCCCTAAGTGATTTGATGTGATATAACTAAGGTTATTTAGGCAAGATAAATAGTTATTTGCACTATTTTCTTTGATTGCATCTTTGGATTATTATGTTTTATGTTCAATTTTTTTGTTTTTTTCTTGGTTGGGGGAGGTTGATAGAATTTTATAAAAAAATCTGAATCTAACAAGTTAATGAATCTGTAGTTAAAATAA

>Glyma02g12520.2   sequence type=CDS   gene model=Glyma02g12520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGACGAGGAGCACCACTTCGAGTCAAAGGCTGATGCTGGAGCATCAAAGACATTTCCCCAGCAAGCTGGAACCATCCGCAAAAACGGTTACATTGTCATCAAGAACAGGCCATGCAAGGTTGTGGAGGTTTCAACTTCCAAAACTGGCAAGCATGGACACGCAAAGTGTCACTTTGTTGCAATTGACATCTTCACTGGGAAAAAGCTTGAGGATATTGTCCCATCTTCCCATAACTGTGATGTTCCCCATGTTAATCGCATTGACTACCAGCTCATTGACATCTCAGAGGATGGATTTGTGAGTCTGCTGACTGAGACTGGTGGTACTAAGGATGACCTTAGGCTTCCAACCGATGAAAATCTGCTTTCGCAGATCAAGGATGGATTTGCTGAGGGCAAAGATCTGGTTGTGTCTGTTATGTCTTCCATGGGGGAGGAGCAGATTTGTGCCCTTAAGGACATTGGCCCCAAGTAA

>Glyma02g12520.3   sequence type=CDS   gene model=Glyma02g12520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGACGAGGAGCACCACTTCGAGTCAAAGGCTGATGCTGGAGCATCAAAGACATTTCCCCAGCAAGCTGGAACCATCCGCAAAAACGGTTACATTGTCATCAAGAACAGGCCATGCAAGGTTGTGGAGGTTTCAACTTCCAAAACTGGCAAGCATGGACACGCAAAGTGTCACTTTGTTGCAATTGACATCTTCACTGGGAAAAAGCTTGAGGATATTGTCCCATCTTCCCATAACTGTGATGTTCCCCATGTTAATCGCATTGACTACCAGCTCATTGACATCTCAGAGGATGGATTTGTAAGATTTCAGTTGCACTTGTGTCCCTTATTCATTCCCCTTTTCTTTTAA

>Glyma02g12520.2   sequence type=predicted peptide   gene model=Glyma02g12520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRIDYQLIDISEDGFVSLLTETGGTKDDLRLPTDENLLSQIKDGFAEGKDLVVSVMSSMGEEQICALKDIGPK*

>Glyma02g12520.3   sequence type=predicted peptide   gene model=Glyma02g12520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRIDYQLIDISEDGFVRFQLHLCPLFIPLFF*







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