Report for Sequence Feature Glyma02g12520
Feature Type: gene_model
Chromosome: Gm02
Start: 10813189
stop: 10815333
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g12520
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G13950 AT
Annotation by Michelle Graham. TAIR10: eukaryotic elongation factor 5A-1 | chr1:4773631-4774668 FORWARD LENGTH=158
SoyBase E_val: 3.00E-100 ISS
GO:0006413 GO-bp
Annotation by Michelle Graham. GO Biological Process: translational initiation
SoyBase N/A ISS
GO:0006452 GO-bp
Annotation by Michelle Graham. GO Biological Process: translational frameshifting
SoyBase N/A ISS
GO:0008612 GO-bp
Annotation by Michelle Graham. GO Biological Process: peptidyl-lysine modification to hypusine
SoyBase N/A ISS
GO:0010089 GO-bp
Annotation by Michelle Graham. GO Biological Process: xylem development
SoyBase N/A ISS
GO:0045901 GO-bp
Annotation by Michelle Graham. GO Biological Process: positive regulation of translational elongation
SoyBase N/A ISS
GO:0045905 GO-bp
Annotation by Michelle Graham. GO Biological Process: positive regulation of translational termination
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0003723 GO-mf
Annotation by Michelle Graham. GO Molecular Function: RNA binding
SoyBase N/A ISS
GO:0003743 GO-mf
Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity
SoyBase N/A ISS
GO:0003746 GO-mf
Annotation by Michelle Graham. GO Molecular Function: translation elongation factor activity
SoyBase N/A ISS
GO:0043022 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ribosome binding
SoyBase N/A ISS
KOG3271
KOG
Translation initiation factor 5A (eIF-5A)
JGI ISS
PTHR11673 Panther
TRANSLATION INITIATION FACTOR 5A-RELATED
JGI ISS
PF00467 PFAM
KOW motif
JGI ISS
PF01287 PFAM
Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold
JGI ISS
UniRef100_C6ZHS3 UniRef
Annotation by Michelle Graham. Best UniRef hit: Eukaryotic translation initiation factor 5A1 n=1 Tax=Glycine max RepID=C6ZHS3_SOYBN
SoyBase E_val: 1.00E-112 ISS
UniRef100_C6ZHS3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic translation initiation factor 5A1 n=1 Tax=Glycine max RepID=C6ZHS3_SOYBN
SoyBase E_val: 1.00E-112 ISS
Expression Patterns of Glyma02g12520
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma02g12520
Paralog Evidence Comments
Glyma01g06600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma02g12520 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.02g112400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma02g12520
Transcripts of Glyma02g12520
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g12520.3 sequence type=transcript gene model=Glyma02g12520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TGTGGAAAAAAAAATGTTACAATGTTCTTCTCTAGTAGTGTATGTTTATAAAAGGAAAACCAGAAGCATCACACATTATGTTGCGTGTGATGAACCATAACCATGTCAGACGAGGAGCACCACTTCGAGTCAAAGGCTGATGCTGGAGCATCAAAGACATTTCCCCAGCAAGCTGGAACCATCCGCAAAAACGGTTACATTGTCATCAAGAACAGGCCATGCAAGGTTGTGGAGGTTTCAACTTCCAAAACTGGCAAGCATGGACACGCAAAGTGTCACTTTGTTGCAATTGACATCTTCACTGGGAAAAAGCTTGAGGATATTGTCCCATCTTCCCATAACTGTGATGTTCCCCATGTTAATCGCATTGACTACCAGCTCATTGACATCTCAGAGGATGGATTTGTAAGATTTCAGTTGCACTTGTGTCCCTTATTCATTCCCCTTTTCTTTTAAGCTACATCTATGAGATATTGATACCCCTAAGTGATTTGATGTGATATAACTAAGGTTATTTAGGCAAGATAAATAGTTATTTGCACTATTTTCTTTGATTGCATCTTTGGATTATTATGTTTTATGTTCAATTTTTTTGTTTTTTTCTTGGTTGGGGGAGGTTGATAGAATTTTATAAAAAAATCTGAATCTAACAAGTTAATGAATCTGTAGTTAAAATAA
Coding sequences of Glyma02g12520
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g12520.2 sequence type=CDS gene model=Glyma02g12520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCAGACGAGGAGCACCACTTCGAGTCAAAGGCTGATGCTGGAGCATCAAAGACATTTCCCCAGCAAGCTGGAACCATCCGCAAAAACGGTTACATTGTCATCAAGAACAGGCCATGCAAGGTTGTGGAGGTTTCAACTTCCAAAACTGGCAAGCATGGACACGCAAAGTGTCACTTTGTTGCAATTGACATCTTCACTGGGAAAAAGCTTGAGGATATTGTCCCATCTTCCCATAACTGTGATGTTCCCCATGTTAATCGCATTGACTACCAGCTCATTGACATCTCAGAGGATGGATTTGTGAGTCTGCTGACTGAGACTGGTGGTACTAAGGATGACCTTAGGCTTCCAACCGATGAAAATCTGCTTTCGCAGATCAAGGATGGATTTGCTGAGGGCAAAGATCTGGTTGTGTCTGTTATGTCTTCCATGGGGGAGGAGCAGATTTGTGCCCTTAAGGACATTGGCCCCAAGTAA
>Glyma02g12520.3 sequence type=CDS gene model=Glyma02g12520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCAGACGAGGAGCACCACTTCGAGTCAAAGGCTGATGCTGGAGCATCAAAGACATTTCCCCAGCAAGCTGGAACCATCCGCAAAAACGGTTACATTGTCATCAAGAACAGGCCATGCAAGGTTGTGGAGGTTTCAACTTCCAAAACTGGCAAGCATGGACACGCAAAGTGTCACTTTGTTGCAATTGACATCTTCACTGGGAAAAAGCTTGAGGATATTGTCCCATCTTCCCATAACTGTGATGTTCCCCATGTTAATCGCATTGACTACCAGCTCATTGACATCTCAGAGGATGGATTTGTAAGATTTCAGTTGCACTTGTGTCCCTTATTCATTCCCCTTTTCTTTTAA
Predicted protein sequences of Glyma02g12520
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g12520.2 sequence type=predicted peptide gene model=Glyma02g12520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRIDYQLIDISEDGFVSLLTETGGTKDDLRLPTDENLLSQIKDGFAEGKDLVVSVMSSMGEEQICALKDIGPK*
>Glyma02g12520.3 sequence type=predicted peptide gene model=Glyma02g12520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRIDYQLIDISEDGFVRFQLHLCPLFIPLFF*