Glyma02g12450 - SoyBase

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Report for Sequence Feature Glyma02g12450

Feature Type:	gene_model
Chromosome:	Gm02
Start:	10717510
stop:	10722522
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g12450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G26660	AT	Annotation by Michelle Graham. TAIR10: Prefoldin chaperone subunit family protein \| chr1:9212298-9213765 FORWARD LENGTH=152	SoyBase	E_val: 4.00E-56	ISS
GO:0006312	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitotic recombination	SoyBase	N/A	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0009560	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016272	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: prefoldin complex	SoyBase	N/A	ISS
GO:0051082	GO-mf	Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding	SoyBase	N/A	ISS
KOG3047	KOG	Predicted transcriptional regulator UXT	JGI		ISS
PTHR13345	Panther	NUT2 AND UXT	JGI		ISS
PTHR13345:SF3	Panther	gb def: putative regulator [schizosaccharomyces pombe]	JGI		ISS
PF02996	PFAM	Prefoldin subunit	JGI		ISS
UniRef100_B9S922	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9S922_RICCO	SoyBase	E_val: 2.00E-85	ISS
UniRef100_I1JE88	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JE88_SOYBN	SoyBase	E_val: 1.00E-104	ISS

Expression Patterns of Glyma02g12450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g12450 not represented in the dataset	Glyma02g12450 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g12450

Paralog	Evidence	Comments
Glyma01g06380	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g12450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g111700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g12450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g12450

Limit To All Plant Sequences

>Glyma02g12450.2   sequence type=transcript   gene model=Glyma02g12450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACTTTTTGACTCATCGGGCTTTGTCTCTCCAACCCGAAAAGTAGGAGTCAGAGAACGAAACGGCACTGTTGAGGTGAAGTCCAATTTCGTAGCTCTTGCGTTTAGCAAAAACGGTGTCGTGCGGAGAAAGAGGCTGCGTTTAAAGATTGCAGATTAGAGAAAACGCTGCTCACTCACTGCAGCTCCCTTGTTCACGTGGACCGGAGGGCGACAAACGCACGACGGAGGGTGACGGACGCGGTCTTTTCCGGCACGGTCTCTCTTCAGTCTTCGCTCTCCCTTTTCCGGCACGGCCCGAGGCGGTCTCACTTCTCTCACCCTTTTGCGACGAGGTCACCACTGTTTCTGTGTTTTCCGGCGAGGACTCTCATCATATGGACAACTTACGTCAGGAGAAAGTTCAAAGATTTGAAGAATTTGTTGACAAACGCCTGAAACCTGATCTTGTTCATGCTATTGCTCAGCGGGACAAGGCCAGATACACAACACATATTTGTGGATGTAGGATTTGGATTCCATGTGGAGTTTACTTGGTCAGAAGCTCTGAACTACATAGAAAAAAGGGAAGAAAAGATAGCCAGGCAGATAGAGGAGTACACCCAGTTGATTGCATCTATTAAAGCTCAGATTAAGCTTGTTTGTGAAGGGATTCGAGAATTACTGCAACTTCCAGCTGAGAAATCCCTACCAGAACGGATATTTTGATAATTACTGAAGAAATGCATGTGAGCAGACCAGAGATTGATGTTTATCTAGGGCGAAAGATTGCATCTCTTTCTCTGACCTTATATCAAAGTACATGAAGATATATTGAACGTCGTTATGTTGTCTTGTTAACCTTTTTGTTATGGTGTCCTGTGTTTGGTCTTGTGGCACTGTGATGCCTCAAGGTTTATTTTTGTTAGCCATTATGTTTAAACTCGATGGTTATGGGAAATCATTTGAAGAATGGCTAGTTTAGTTTTGCATTCAAATAATTTGAGAAAAACATAGCTAATGTATTCGCATAAATGCTAGCGGAAAGTTTGATAATGGAAGATGGCAGTTGCTTCCTGCACCTCCATAATTTCTAACATTCTAACATTACCCTTCATACCCCATTGGAAG

>Glyma02g12450.3   sequence type=transcript   gene model=Glyma02g12450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTAAATTGGAATTTTAAAATAAAAAATATGCTAAAAGAGATTGCAGATTAGAGAAAACGCTGCTCACTCACTGCAGCTCCCTTGTTCACGTGGACCGGAGGGCGACAAACGCACGACGGAGGGTGACGGACGCGGTCTTTTCCGGCACGGTCTCTCTTCAGTCTTCGCTCTCCCTTTTCCGGCACGGCCCGAGGCGGTCTCACTTCTCTCACCCTTTTGCGACGAGGTCACCACTGTTTCTGTGTTTTCCGGCGAGGACTCTCATCATATGGACAACTTACGTCAGGAGAAAGTTCAAAGATTTGAAGAATTTGTTGACAAACGCCTGAAACCTGATCTTGTTCATGCTATTGCTCAGCGGCCAGATACACAACACATATTTGTGGATGTAGGATTTGGATTCCATGTGGAGTTTACTTGGTCAGAAGCTCTGAACTACATAGAAAAAAGGGAAGAAAAGATAGCCAGGCAGATAGAGGAGTACACCCAGTTGATTGCATCTATTAAAGCTCAGATTAAGCTTGTTTGTGAAGGGATTCGAGAATTACTGCAACTTCCAGCTGAGAAATCCCTACCAGAACGGATATTTTGATAATTACTGAAGAAATGCATGTGAGCAGACCAGAGATTGATGTTTATCTAGGGCGAAAGATTGCATCTCTTTCTCTGACCTTATATCAAAGTACATGAAGATATATTGAACGTCGTTATGTTGTCTTGTTAACCTTTTTGTTATGGTGTCCTGTGTTTGGTCTTGTGGCACTGTGATGCCTCAAGGTTTATTTTTGTTAGCCATTATGTTTAAACTCGATGGTTATGGGAAATCATTTGAAGAATGGCTAGTTTAGTTTTGCATTCAAATAATTTGAGAAAAACATAGCTAATGTATTCGCATAAATGCTAGCGGAAAGTTTGATAATGGAAGATGGCAGTTGCTTCCTGCACCTCCATAATTTCTAACATTCTAACATTACCCTTCATACCCCATTGGAAG

>Glyma02g12450.4   sequence type=transcript   gene model=Glyma02g12450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTAAATTGGAATTTTAAAATAAAAAATATGCTAAAAGAGATTGCAGATTAGAGAAAACGCTGCTCACTCACTGCAGCTCCCTTGTTCACGTGGACCGGAGGGCGACAAACGCACGACGGAGGGTGACGGACGCGGTCTTTTCCGGCACGGTCTCTCTTCAGTCTTCGCTCTCCCTTTTCCGGCACGGCCCGAGGCGGTCTCACTTCTCTCACCCTTTTGCGACGAGGTCACCACTGTTTCTGTGTTTTCCGGCGAGGACTCTCATCATATGGACAACTTACGTCAGGAGAAAGTTCAAAGATTTGAAGAATTTGTTGACAAACGCCTGAAACCTGATCTTGTTCATGCTATTGCTCAGCGGGACAAGGCCAGATACACAACACATATTTGTGGATGTAGGATTTGGATTCCATGTGGAGTTTACTTGGTCAGAAGCTCTGAACTACATAGAAAAAAGGGAAGAAAAGATAGCCAGGCAGATAGAGGAGTACACCCAGTTGATTGCATCTATTAAAGCTCAGATTAAGCTTGTTTGTGAAGGGATTCGAGAATTACTGCAACTTCCAGCTGAGAAATCCCTACCAGAACGGATATTTTGATAATTACTGAAGAAATGCATGTGAGCAGACCAGAGATTGATGTTTATCTAGGGCGAAAGATTGCATCTCTTTCTCTGACCTTATATCAAAGTACATGAAGATATATTGAACGTCGTTATGTTGTCTTGTTAACCTTTTTGTTATGGTGTCCTGTGTTTGGTCTTGTGGCACTGTGATGCCTCAAGGTTTATTTTTGTTAGCCATTATGTTTAAACTCGATGGTTATGGGAAATCATTTGAAGAATGGCTAGTTTAGTTTTGCATTCAAATAATTTGAGAAAAACATAGCTAATGTATTCGCATAAATGCTAGCGGAAAGTTTGATAATGGAAGATGGCAGTTGCTTCCTGCACCTCCATAATTTCTAACATTCTAACATTACCCTTCATACCCCATTGGAAG

Coding sequences of Glyma02g12450

Limit To All Plant Sequences

>Glyma02g12450.1   sequence type=CDS   gene model=Glyma02g12450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAACTTACGTCAGGAGAAAGTTCAAAGATTTGAAGAATTTGTTGACAAACGCCTGAAACCTGATCTTGTTCATGCTATTGCTCAGCGGGACAAGGTATTTGAACAACAGAAAATTTTTGCTGATTTGGGAAAAAACATTGAAAACCTAGAGAAGAATAGTGTAACCAGTCTTAGAACTTTGGTCAATCTTGGGTCTGAAGTATACCTGCAGGCAGAAGTGCCAGATACACAACACATATTTGTGGATGTAGGATTTGGATTCCATGTGGAGTTTACTTGGTCAGAAGCTCTGAACTACATAGAAAAAAGGGAAGAAAAGATAGCCAGGCAGATAGAGGAGTACACCCAGTTGATTGCATCTATTAAAGCTCAGATTAAGCTTGTTTGTGAAGGGATTCGAGAATTACTGCAACTTCCAGCTGAGAAATCCCTACCAGAACGGATATTTTGA

>Glyma02g12450.2   sequence type=CDS   gene model=Glyma02g12450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTATTGCTCAGCGGGACAAGGCCAGATACACAACACATATTTGTGGATGTAGGATTTGGATTCCATGTGGAGTTTACTTGGTCAGAAGCTCTGAACTACATAGAAAAAAGGGAAGAAAAGATAGCCAGGCAGATAGAGGAGTACACCCAGTTGATTGCATCTATTAAAGCTCAGATTAAGCTTGTTTGTGAAGGGATTCGAGAATTACTGCAACTTCCAGCTGAGAAATCCCTACCAGAACGGATATTTTGA

>Glyma02g12450.3   sequence type=CDS   gene model=Glyma02g12450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAACTTACGTCAGGAGAAAGTTCAAAGATTTGAAGAATTTGTTGACAAACGCCTGAAACCTGATCTTGTTCATGCTATTGCTCAGCGGCCAGATACACAACACATATTTGTGGATGTAGGATTTGGATTCCATGTGGAGTTTACTTGGTCAGAAGCTCTGAACTACATAGAAAAAAGGGAAGAAAAGATAGCCAGGCAGATAGAGGAGTACACCCAGTTGATTGCATCTATTAAAGCTCAGATTAAGCTTGTTTGTGAAGGGATTCGAGAATTACTGCAACTTCCAGCTGAGAAATCCCTACCAGAACGGATATTTTGA

>Glyma02g12450.4   sequence type=CDS   gene model=Glyma02g12450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTATTGCTCAGCGGGACAAGGCCAGATACACAACACATATTTGTGGATGTAGGATTTGGATTCCATGTGGAGTTTACTTGGTCAGAAGCTCTGAACTACATAGAAAAAAGGGAAGAAAAGATAGCCAGGCAGATAGAGGAGTACACCCAGTTGATTGCATCTATTAAAGCTCAGATTAAGCTTGTTTGTGAAGGGATTCGAGAATTACTGCAACTTCCAGCTGAGAAATCCCTACCAGAACGGATATTTTGA

Predicted protein sequences of Glyma02g12450

Limit To All Plant Sequences

>Glyma02g12450.1   sequence type=predicted peptide   gene model=Glyma02g12450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDNLRQEKVQRFEEFVDKRLKPDLVHAIAQRDKVFEQQKIFADLGKNIENLEKNSVTSLRTLVNLGSEVYLQAEVPDTQHIFVDVGFGFHVEFTWSEALNYIEKREEKIARQIEEYTQLIASIKAQIKLVCEGIRELLQLPAEKSLPERIF*

>Glyma02g12450.2   sequence type=predicted peptide   gene model=Glyma02g12450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLLSGTRPDTQHIFVDVGFGFHVEFTWSEALNYIEKREEKIARQIEEYTQLIASIKAQIKLVCEGIRELLQLPAEKSLPERIF*

>Glyma02g12450.3   sequence type=predicted peptide   gene model=Glyma02g12450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDNLRQEKVQRFEEFVDKRLKPDLVHAIAQRPDTQHIFVDVGFGFHVEFTWSEALNYIEKREEKIARQIEEYTQLIASIKAQIKLVCEGIRELLQLPAEKSLPERIF*

>Glyma02g12450.4   sequence type=predicted peptide   gene model=Glyma02g12450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLLSGTRPDTQHIFVDVGFGFHVEFTWSEALNYIEKREEKIARQIEEYTQLIASIKAQIKLVCEGIRELLQLPAEKSLPERIF*

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