SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G13990 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3110 (InterPro:IPR021503); Has 25 Blast hits to 25 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:4794810-4796476 FORWARD LENGTH=277 | SoyBase | E_val: 9.00E-98 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009646 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to absence of light | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF11360 | PFAM | Protein of unknown function (DUF3110) | JGI | ISS | |
| UniRef100_I1JE80 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JE80_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q94F46 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AT4g27310/M4I22_120 n=1 Tax=Arabidopsis thaliana RepID=Q94F46_ARATH | SoyBase | E_val: 4.00E-95 | ISS |
|
Glyma02g12380 not represented in the dataset |
Glyma02g12380 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g06300 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g111300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g12380.4 sequence type=transcript gene model=Glyma02g12380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGCGTAAGTAAGCATGTACAAAATGACCACGAACTGGAGTAGTGTGGTTGACGCCAAAACAAAAATGAATCGCGCGAAACTCGCGAGAACAGGCACGCACGCGTCTAAATTGGTGAGCTACCACGACACGCCTAGGAGCTTGGAGGAACATATAAGATCCACGTGGACCCCACTTCACAAAAAAATCTTCACAGCCCAAACTCCAACTCTTCTTTCTTTCCTTTTGCTTTTTCCAACTTCTCTTCTTTTTCTTCTTCGTCAAACTCATCAATTTGAATTCACCATGGATTCCCTTCCTTCCGTCTCGCCCTCCATGGTCCTCCCTCCGAGCCATCCTTTCCGCCGCCTCCCTCCCAGCCTCGTCTCCTCCCGAACCAGAAGCCGCCGCCGCCGCCACGTGTCGGTGTCCTGCACCCTCGCCGGCGACGGCACCGATGACGAAGTCGAAAGGGCTCTTCACATGGACGGCGCAATTCCCCGCACCTCCGACGAGTTCGTCAAGCGCGTATCCTCACGCGCCTACGACATGCGCCGCAATCTCCAACAATCCTTCGACACCAGCAGCTACGACGTTTTAGATGCCAACCCTTGGAGAGAGATTTCAAAGCCTGTGTATGTACTCACGCAAAAGGAAAATCAACTGTGCACAATGAAAACCCGCAGAAATAGAAGCGAAGTTGAAAGAGAGCTTGGATTGTTGTTTTCTAAAGGCAGCAAGTGGAGTTCTGGAATTGGAAATCAGTCAAAACAAGCGAGGGGAGGGACTAATAAGTTTCAAATGCTTGTGGAAGATGTTAGAGAGGGAGTGCTGGTATGTGTTCTATTCACATTCGCAAACATGGGATTGTGGCTTAATTTTTTGTTTGTTCCGCATGTGGAAAACATTTTGTAACATGAAATGCAGCCAGAAATATCAAATACTATGATATGTTCTTCCCTTTTGTTTGAACTCAATTGTTAATTTGTTATATGGTTACT
>Glyma02g12380.3 sequence type=CDS gene model=Glyma02g12380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTACAAAATGACCACGAACTGGAGTAGTGTGGTTGACGCCAAAACAAAAATGAATCGCGCGAAACTCGCGAGAACAGGCACGCACGCGTCTAAATTGGTGAGCTACCACGACACGCCTAGGAGCTTGGAGGAACATATAAGATCCACGTGGACCCCACTTCACAAAAAAATCTTCACAGCCCAAACTCCAACTCTTCTTTCTTTCCTTTTGCTTTTTCCAACTTCTCTTCTTTTTCTTCTTCGTCAAACTCATCAATTTGAATTCACCATGGATTCCCTTCCTTCCGTCTCGCCCTCCATGGTCCTCCCTCCGAGCCATCCTTTCCGCCGCCTCCCTCCCAGCCTCGTCTCCTCCCGAACCAGAAGCCGCCGCCGCCGCCACGTGTCGGTGTCCTGCACCCTCGCCGGCGACGGCACCGATGACGAAGTCGAAAGGGCTCTTCACATGGACGGCGCAATTCCCCGCACCTCCGACGAGTTCGTCAAGCGCGTATCCTCACGCGCCTACGACATGCGCCGCAATCTCCAACAATCCTTCGACACCAGCAGCTACGACGTTTTAGATGCCAACCCTTGGAGAGAGATTTCAAAGCCTGTGTATGTACTCACGCAAAAGGAAAATCAACTGTGCACAATGAAAACCCGCAGAAATAGAAGCGAAGTTGAAAGAGAGCTTGGATTGTTGTTTTCTAAAGGCAGCAAGTGGAGTTCTGGAATTGGAAATCAGTCAAAACAAGCGAGGGGAGGGACTAATAAGTTTCAAATGCTTGTGGAAGATGTTAGAGAGGGAGTGCTGGTATTTGAAGATGCAAACGAGGCAGTAAAGTATTGTGACTTGCTAGAAGGAGGTGGTCAAGGTTGTGAAGGTGTTGCCGAGATAGAAGCCTCATCGATATTTGATCTTTGCCAGAAAATGAGGGCTCTTGCAGTTCTATTCCGCAGAGGGAGGACACCTCCTCTACCCGAAAGTCTTAAGCTGAATCTGCGAGCTCGTAATCGGTCCCTTGAAGATCAAGATGATTTGATGTGA >Glyma02g12380.4 sequence type=CDS gene model=Glyma02g12380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTACAAAATGACCACGAACTGGAGTAGTGTGGTTGACGCCAAAACAAAAATGAATCGCGCGAAACTCGCGAGAACAGGCACGCACGCGTCTAAATTGGTGAGCTACCACGACACGCCTAGGAGCTTGGAGGAACATATAAGATCCACGTGGACCCCACTTCACAAAAAAATCTTCACAGCCCAAACTCCAACTCTTCTTTCTTTCCTTTTGCTTTTTCCAACTTCTCTTCTTTTTCTTCTTCGTCAAACTCATCAATTTGAATTCACCATGGATTCCCTTCCTTCCGTCTCGCCCTCCATGGTCCTCCCTCCGAGCCATCCTTTCCGCCGCCTCCCTCCCAGCCTCGTCTCCTCCCGAACCAGAAGCCGCCGCCGCCGCCACGTGTCGGTGTCCTGCACCCTCGCCGGCGACGGCACCGATGACGAAGTCGAAAGGGCTCTTCACATGGACGGCGCAATTCCCCGCACCTCCGACGAGTTCGTCAAGCGCGTATCCTCACGCGCCTACGACATGCGCCGCAATCTCCAACAATCCTTCGACACCAGCAGCTACGACGTTTTAGATGCCAACCCTTGGAGAGAGATTTCAAAGCCTGTGTATGTACTCACGCAAAAGGAAAATCAACTGTGCACAATGAAAACCCGCAGAAATAGAAGCGAAGTTGAAAGAGAGCTTGGATTGTTGTTTTCTAAAGGCAGCAAGTGGAGTTCTGGAATTGGAAATCAGTCAAAACAAGCGAGGGGAGGGACTAATAAGTTTCAAATGCTTGTGGAAGATGTTAGAGAGGGAGTGCTGGTATGTGTTCTATTCACATTCGCAAACATGGGATTGTGGCTTAATTTTTTGTTTGTTCCGCATGTGGAAAACATTTTGTAA
>Glyma02g12380.3 sequence type=predicted peptide gene model=Glyma02g12380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MYKMTTNWSSVVDAKTKMNRAKLARTGTHASKLVSYHDTPRSLEEHIRSTWTPLHKKIFTAQTPTLLSFLLLFPTSLLFLLRQTHQFEFTMDSLPSVSPSMVLPPSHPFRRLPPSLVSSRTRSRRRRHVSVSCTLAGDGTDDEVERALHMDGAIPRTSDEFVKRVSSRAYDMRRNLQQSFDTSSYDVLDANPWREISKPVYVLTQKENQLCTMKTRRNRSEVERELGLLFSKGSKWSSGIGNQSKQARGGTNKFQMLVEDVREGVLVFEDANEAVKYCDLLEGGGQGCEGVAEIEASSIFDLCQKMRALAVLFRRGRTPPLPESLKLNLRARNRSLEDQDDLM* >Glyma02g12380.4 sequence type=predicted peptide gene model=Glyma02g12380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MYKMTTNWSSVVDAKTKMNRAKLARTGTHASKLVSYHDTPRSLEEHIRSTWTPLHKKIFTAQTPTLLSFLLLFPTSLLFLLRQTHQFEFTMDSLPSVSPSMVLPPSHPFRRLPPSLVSSRTRSRRRRHVSVSCTLAGDGTDDEVERALHMDGAIPRTSDEFVKRVSSRAYDMRRNLQQSFDTSSYDVLDANPWREISKPVYVLTQKENQLCTMKTRRNRSEVERELGLLFSKGSKWSSGIGNQSKQARGGTNKFQMLVEDVREGVLVCVLFTFANMGLWLNFLFVPHVENIL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
