SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G14000 | AT | Annotation by Michelle Graham. TAIR10: VH1-interacting kinase | chr1:4797606-4800043 FORWARD LENGTH=438 | SoyBase | E_val: 3.00E-124 | ISS |
| GO:0000165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: MAPK cascade | SoyBase | N/A | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0007154 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell communication | SoyBase | N/A | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
| GO:0009723 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus | SoyBase | N/A | ISS |
| GO:0009733 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus | SoyBase | N/A | ISS |
| GO:0009734 | GO-bp | Annotation by Michelle Graham. GO Biological Process: auxin mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009738 | GO-bp | Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: brassinosteroid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009753 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009863 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009966 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of signal transduction | SoyBase | N/A | ISS |
| GO:0010305 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf vascular tissue pattern formation | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0030968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0035556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction | SoyBase | N/A | ISS |
| GO:0042538 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response | SoyBase | N/A | ISS |
| GO:0043069 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0004712 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine/tyrosine kinase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| KOG4214 | KOG | Myotrophin and similar proteins | JGI | ISS | |
| PTHR23257 | Panther | SERINE-THREONINE PROTEIN KINASE | JGI | ISS | |
| PTHR23257:SF89 | Panther | ANKYRIN-KINASE | JGI | ISS | |
| PF07714 | PFAM | Protein tyrosine kinase | JGI | ISS | |
| UniRef100_B9S913 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase, putative n=1 Tax=Ricinus communis RepID=B9S913_RICCO | SoyBase | E_val: 3.00E-126 | ISS |
| UniRef100_I1JE79 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JE79_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma02g12370 not represented in the dataset |
Glyma02g12370 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g06290 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g12370.1 sequence type=CDS gene model=Glyma02g12370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCGGCGGAGGCGAAGGAGAAGGAGAAGGCGCGTGTGAGTCGAACGTCGCTGATTCTGTGGCACGCGCACCAAAACGACGCCGCGGCGGTGCGGAAGCTTCTGGAGGAGGATCCGTCCCTGGTGAAGGCGAGGGATTACGATAGCCGCACGCCGCTGCACGTGAAGTCACTCCACGGATGGGTCGAAGTGTCGAAGTGCTTGATCGAATTCGATGCTGACGTCAACGCTCAGGATCGTTGGAAAAACACTCCTCTGGCTGATGCAGAAGGAGCTAAAAGAACTGCCATGATTGAGCTTTTGAAGTCACATGGTGGCTTGTCGTATCTGGGTACCACATTTCTCTTGGTCTTACTTCAAATTGGATTGCCTTCTGCGGAGAATACCTGTCATCTAAAATTAGTTTGCTTTCTGTATGGATCTTTTGGTGAGATTTTAAAAGCCCATTGGCGAGGAACACCTGTTGCTGTCAAACGTATTCTTCCATCTCTGTCAGATGATAGATTGGCAGGGTTCTCTTGTAGCCTGAGAAGTGAGAAGATGGGCATGGTCCCCCACAAAACTTTTTTTTTTATTTCTTTTAAACTTGGATTTTCTTCATGTGTTTATTTTTTATTTAAAAGCTTTCGACACCCTAATGTCGTTCAATTTCTTGGAGCTGTTACTGACAAGAAGCCCCTTATGTTAATTACTGAGTATCTGAGAGGAGGTGATCTTTATAAGTACCTCAAGGACAAAGGTGCACTTAGTCCTTCAACAGCCATCAACTTTGGCTTGGATATTGCTAGGTATGAGGGATGGCCTATCTTCACAATGAACCAAATGAATTTATATGTCTATGCATTACATGTTGAAATCGTTTTTCAGTTTCGCCCCTACAATTTCAGGAATGTTCTTTTACTCATTAAGGTCCAAAGTGCTCATGACGGGAAAGACTGCCACATGGCTCCTGAAGTTTTGAAATACCGGAGATATGATAAGAAGGTTGATGTGTTCTCCTTTGCAATGAGTGAGATGCTTGAAGCCAAATATGTGGCAGAAGGACAAAGGCCTTCTTTTAGGGCAAAGGGTTATATCCTGAACTGCAAGAGTAAGTCATTTCTAATCCCACATTGTCTATTTCATCCACTTCCACTTCCCTCTTCTTTTACTCTTTACACGATCCAACATTTATATTCTTTTACTGTGTGA
>Glyma02g12370.1 sequence type=predicted peptide gene model=Glyma02g12370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAEAKEKEKARVSRTSLILWHAHQNDAAAVRKLLEEDPSLVKARDYDSRTPLHVKSLHGWVEVSKCLIEFDADVNAQDRWKNTPLADAEGAKRTAMIELLKSHGGLSYLGTTFLLVLLQIGLPSAENTCHLKLVCFLYGSFGEILKAHWRGTPVAVKRILPSLSDDRLAGFSCSLRSEKMGMVPHKTFFFISFKLGFSSCVYFLFKSFRHPNVVQFLGAVTDKKPLMLITEYLRGGDLYKYLKDKGALSPSTAINFGLDIARYEGWPIFTMNQMNLYVYALHVEIVFQFRPYNFRNVLLLIKVQSAHDGKDCHMAPEVLKYRRYDKKVDVFSFAMSEMLEAKYVAEGQRPSFRAKGYILNCKSKSFLIPHCLFHPLPLPSSFTLYTIQHLYSFTV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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