SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G15310 | AT | Annotation by Michelle Graham. TAIR10: myb domain protein 16 | chr5:4974894-4976106 FORWARD LENGTH=326 | SoyBase | E_val: 6.00E-101 | ISS |
| GO:0000902 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell morphogenesis | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009723 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus | SoyBase | N/A | ISS |
| GO:0009733 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus | SoyBase | N/A | ISS |
| GO:0009739 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus | SoyBase | N/A | ISS |
| GO:0009751 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus | SoyBase | N/A | ISS |
| GO:0009753 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| KOG0048 | KOG | Transcription factor, Myb superfamily | JGI | ISS | |
| PTHR10641 | Panther | MYB-RELATED | JGI | ISS | |
| PF00249 | PFAM | Myb-like DNA-binding domain | JGI | ISS | |
| UniRef100_G7JGA6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: MYB transcription factor n=1 Tax=Medicago truncatula RepID=G7JGA6_MEDTR | SoyBase | E_val: 8.00E-115 | ISS |
| UniRef100_UPI000233788A | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233788A related cluster n=1 Tax=unknown RepID=UPI000233788A | SoyBase | E_val: 0 | ISS |
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Glyma02g12266 not represented in the dataset |
Glyma02g12266 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g110200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g12266.1 sequence type=CDS gene model=Glyma02g12266 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAAGGTCACCATGCTGTGAGAAGACAGGGCTAAAGAAAGGGCCATGGACACCGGAGGAAGACCAAAAGCTCATTGCTTTCATCGAAAAGCATGGCCATGGAAGCTGGCGTGCATTGCCTGCAAAAGCTGGGCTTAGAAGATGTGGAAAGAGTTGCAGACTTAGATGGTCGAATTATCTCCGACCTGATATAAAACGAGGAAAGTTCAGCTTGCAGGAAGAGCAAACCATTATTCAACTTCATGCCCTTCTAGGAAACAGGTGGTCAGCCATAGCATCTCACTTGCCCAAGAGAACAGACAATGAGATCAAGAACTACTGGAACACCCACCTCAAGAAGAGGCTGGACAAAATGGGCATAGACCCAACAACCCACAAGCCAAAAAATGAGTCCCTAGCCTACTCCAAAGACGGCTCGAACCTTGGCCACATGGCTCAGTGGGAGAGTGCTCGGCTCGAAGCCGAAGCCAGACTCGTAAGAGAATCCAAACTACAAGAACAACAAAACAACCTCGGACCTATGTCCTCTCCTTCCTCAACACAAATTACGAGGCTCGTTCTCAACAAAATCACACCCCTACAACAAAAACAACACTCACTACCACCGTGCCTCGACGTGCTCAAAGCGTGGCAAAGTTCATGGTCAAACAACAACAACAACATTAACAAATACTCATCACTAAACGACAAGAAGAAAACCATGCATGTGCGTAGCATGTATGCCATGATGCTTTCAAATGATGACCTAGAGTCTCCAACATCCACTTTGTGCTTCCCCGAGAGCGTGCAAATGAATAATAATAACAATAACTCTAACGCTATGGTCTCAACCAACCACCTTGGGTTAATCAATGAGAACTATTTACTCCCTCCAACCACCCTGGATGAGTTCATTATTACCAAAAGTTTAGGAACAACAAGTAGTGAGGGTGCAATTGAAACCGTGAATGGTGGTGGTAGTGACTCGTGGAGGTACTTCACCAAACACAACAATGAAGAAGAACAAGTTGAAACTGATGAGAAGACAATAATGTACGACACGATTTCATGTTTGCAAGACGATGACGGTGATATTATGGTGGCTGTTGAGGCATTAAGAGGTGCTGGTTATTATGATGATGATAATAATAGCAACAATAATAATGTCACATTTACGCATCTCTCTAGCAATGTCAATAATATGGTGGGTTTCGAAAACGATTTTGATTCCAATGAAGATTTAGCGGCGGTGAACTTGCATGTGAACTTCGAGGAGAATAAGGATTATTGGAATGGCATGCTTAATTAG
>Glyma02g12266.1 sequence type=predicted peptide gene model=Glyma02g12266 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGRSPCCEKTGLKKGPWTPEEDQKLIAFIEKHGHGSWRALPAKAGLRRCGKSCRLRWSNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIASHLPKRTDNEIKNYWNTHLKKRLDKMGIDPTTHKPKNESLAYSKDGSNLGHMAQWESARLEAEARLVRESKLQEQQNNLGPMSSPSSTQITRLVLNKITPLQQKQHSLPPCLDVLKAWQSSWSNNNNNINKYSSLNDKKKTMHVRSMYAMMLSNDDLESPTSTLCFPESVQMNNNNNNSNAMVSTNHLGLINENYLLPPTTLDEFIITKSLGTTSSEGAIETVNGGGSDSWRYFTKHNNEEEQVETDEKTIMYDTISCLQDDDGDIMVAVEALRGAGYYDDDNNSNNNNVTFTHLSSNVNNMVGFENDFDSNEDLAAVNLHVNFEENKDYWNGMLN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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