SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G01140 | AT | Annotation by Michelle Graham. TAIR10: myb domain protein 106 | chr3:46619-48143 REVERSE LENGTH=388 | SoyBase | E_val: 4.00E-83 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0010091 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome branching | SoyBase | N/A | ISS |
| GO:0010093 | GO-bp | Annotation by Michelle Graham. GO Biological Process: specification of floral organ identity | SoyBase | N/A | ISS |
| GO:0048440 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carpel development | SoyBase | N/A | ISS |
| GO:0048507 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| KOG0048 | KOG | Transcription factor, Myb superfamily | JGI | ISS | |
| PTHR10641 | Panther | MYB-RELATED | JGI | ISS | |
| PF00249 | PFAM | Myb-like DNA-binding domain | JGI | ISS | |
| UniRef100_C6F085 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: R2R3 MYB transcription factor n=2 Tax=Gossypium hirsutum RepID=C6F085_GOSHI | SoyBase | E_val: 4.00E-85 | ISS |
| UniRef100_UPI0002337889 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337889 related cluster n=1 Tax=unknown RepID=UPI0002337889 | SoyBase | E_val: 0 | ISS |
|
Glyma02g12254 not represented in the dataset |
Glyma02g12254 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g06192 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g110100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g12254.2 sequence type=transcript gene model=Glyma02g12254 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCGTTCAGTGCCAGCCAAAGCGGGTCTTGAAAGATGTGGAAAGAGTTGCAGACTTAGGTGGATTAACTACCTCAAGCCTGATATAAAACGAGGAAACTTTACCATGGAGGAAGACCACACCATTATTCAACTTCATGCCCTTCTAGGAAACAAATGGTCAATCATAGCAGCTCACTTGCCAAAGAGAACAGATAATGAGATAAAGAACTATTGGAACACCAACGTTAAGAAAAGACTCATCAGAATGGGGTTAGATCCCATTACCCACAAACCAATAAAAACCAATACTTTTGAAGCATACGGTGGTGGCCATGGCCAGTCCGAGGATAATATAAATATGAACCACATGGCCCAATGGGAGAGTGCTCGAATTGAAGCTGAAGCAAGAGGATCTGTGTTTCAAGCTGGATCTCACTCCTCACATCAACCCCAACTAATCTTAAGCAAAATCCCAACTCAACCTTGTTTTTCATCATCAGATTCACTATCAACCAAACGCAACACTGTGTATAACATGTATGCCCTCGTGCTTGCAACAAATCATGACCCTGTATTGCCGGTATCTACATTGAGCATCCCCTATTGGCAGACTCCTTCGCCAGTCTCTACCAATATTGGAAGATTTACCGACACGGGAAGCTCACTCTCTTATGAGGAAAATGTTAACATCACAGAAACTAGTTGTCAAACTCAAAAGATAATAGAAGATTACATGTTAAACTCGCAAGATGATGATATTATCGTGGCCGTGGAAGCATTTAGAACAACAAGATGTGAGAGTATTCAAGAATTGTTTAGGGGGTCCAATGACGTGGAAGGTCCAAACAATGATTCTTTTGAAAGAAATGTGTAGAAGAGTGTGGAAATATTGGAAAGTTCAATTTTCATGCTTTGCTTGTTGTTTCAGTGTGTGATTTTGTTACTTCTGTTTCGTGGGGTTTTCTTTTTCATGTTGGGTTGGGTGTCTCATAATGTGTTGTTTATGAGGTTGATTTTTTTGGCTTCATGGTGTGTTGGACTATGATAGGTGCTGAAGTTTAATTTGGTTCTGTAATCAGGATAAAGAACTTTTATGGTAGTATTCTCATGTTTCGGTTCTAGTCTAATTGAACATTCTTTGTTCTTAATTAATATCTAGCTAGTTTCATTTGTTTGTAATATTGAAAAGAAAT
>Glyma02g12254.1 sequence type=CDS gene model=Glyma02g12254 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAAGGATTCCATGCTGTGAAAAGGTAGGGTTGAAGAAAGGACCATGGACATCGGAAGAAGACAAGAAGCTTGTGGCTTATGTTGAAAAGCATGGCCATAGAAACTGGCGTTCAGTGCCTGCCAAAGCAGGTCTTGAAAGATGTGGAAAGAGTTGCAGACTTAGGTGGATTAACTACCTCAAGCCTGATATAAAACGAGGAAACTTTACCATGGAGGAAGACCACACCATTATTCAACTTCATGCCCTTCTAGGAAACAAATGGTCAATCATAGCAGCTCACTTGCCAAAGAGAACAGATAATGAGATAAAGAACTATTGGAACACCAACGTTAAGAAAAGACTCATCAGAATGGGGTTAGATCCCATTACCCACAAACCAATAAAAACCAATACTTTTGAAGCATACGGTGGTGGCCATGGCCAGTCCGAGGATAATATAAATATGAACCACATGGCCCAATGGGAGAGTGCTCGAATTGAAGCTGAAGCAAGAGGATCTGTGTTTCAAGCTGGATCTCACTCCTCACATCAACCCCAACTAATCTTAAGCAAAATCCCAACTCAACCTTGTTTTTCATCATCAGATTCACTATCAACCAAACGCAACACTGTGTATAACATGTATGCCCTCGTGCTTGCAACAAATCATGACCCTGTATTGCCGGTATCTACATTGAGCATCCCCTATTGGCAGACTCCTTCGCCAGTCTCTACCAATATTGGAAGATTTACCGACACGGGAAGCTCACTCTCTTATGAGGAAAATGTTAACATCACAGAAACTAGTTGTCAAACTCAAAAGATAATAGAAGATTACATGTTAAACTCGCAAGATGATGATATTATCGTGGCCGTGGAAGCATTTAGAACAACAAGATGTGAGAGTATTCAAGAATTGTTTAGGGGGTCCAATGACGTGGAAGGTCCAAACAATGATTCTTTTGAAAGAAATGTGTAG >Glyma02g12254.2 sequence type=CDS gene model=Glyma02g12254 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGAAGACCACACCATTATTCAACTTCATGCCCTTCTAGGAAACAAATGGTCAATCATAGCAGCTCACTTGCCAAAGAGAACAGATAATGAGATAAAGAACTATTGGAACACCAACGTTAAGAAAAGACTCATCAGAATGGGGTTAGATCCCATTACCCACAAACCAATAAAAACCAATACTTTTGAAGCATACGGTGGTGGCCATGGCCAGTCCGAGGATAATATAAATATGAACCACATGGCCCAATGGGAGAGTGCTCGAATTGAAGCTGAAGCAAGAGGATCTGTGTTTCAAGCTGGATCTCACTCCTCACATCAACCCCAACTAATCTTAAGCAAAATCCCAACTCAACCTTGTTTTTCATCATCAGATTCACTATCAACCAAACGCAACACTGTGTATAACATGTATGCCCTCGTGCTTGCAACAAATCATGACCCTGTATTGCCGGTATCTACATTGAGCATCCCCTATTGGCAGACTCCTTCGCCAGTCTCTACCAATATTGGAAGATTTACCGACACGGGAAGCTCACTCTCTTATGAGGAAAATGTTAACATCACAGAAACTAGTTGTCAAACTCAAAAGATAATAGAAGATTACATGTTAAACTCGCAAGATGATGATATTATCGTGGCCGTGGAAGCATTTAGAACAACAAGATGTGAGAGTATTCAAGAATTGTTTAGGGGGTCCAATGACGTGGAAGGTCCAAACAATGATTCTTTTGAAAGAAATGTGTAG
>Glyma02g12254.1 sequence type=predicted peptide gene model=Glyma02g12254 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGRIPCCEKVGLKKGPWTSEEDKKLVAYVEKHGHRNWRSVPAKAGLERCGKSCRLRWINYLKPDIKRGNFTMEEDHTIIQLHALLGNKWSIIAAHLPKRTDNEIKNYWNTNVKKRLIRMGLDPITHKPIKTNTFEAYGGGHGQSEDNINMNHMAQWESARIEAEARGSVFQAGSHSSHQPQLILSKIPTQPCFSSSDSLSTKRNTVYNMYALVLATNHDPVLPVSTLSIPYWQTPSPVSTNIGRFTDTGSSLSYEENVNITETSCQTQKIIEDYMLNSQDDDIIVAVEAFRTTRCESIQELFRGSNDVEGPNNDSFERNV* >Glyma02g12254.2 sequence type=predicted peptide gene model=Glyma02g12254 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEEDHTIIQLHALLGNKWSIIAAHLPKRTDNEIKNYWNTNVKKRLIRMGLDPITHKPIKTNTFEAYGGGHGQSEDNINMNHMAQWESARIEAEARGSVFQAGSHSSHQPQLILSKIPTQPCFSSSDSLSTKRNTVYNMYALVLATNHDPVLPVSTLSIPYWQTPSPVSTNIGRFTDTGSSLSYEENVNITETSCQTQKIIEDYMLNSQDDDIIVAVEAFRTTRCESIQELFRGSNDVEGPNNDSFERNV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
