SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G14190 | AT | Annotation by Michelle Graham. TAIR10: Glucose-methanol-choline (GMC) oxidoreductase family protein | chr1:4852802-4854307 FORWARD LENGTH=501 | SoyBase | E_val: 0 | ISS |
| GO:0006066 | GO-bp | Annotation by Michelle Graham. GO Biological Process: alcohol metabolic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0008812 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: choline dehydrogenase activity | SoyBase | N/A | ISS |
| GO:0016614 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on CH-OH group of donors | SoyBase | N/A | ISS |
| GO:0016832 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: aldehyde-lyase activity | SoyBase | N/A | ISS |
| GO:0050660 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding | SoyBase | N/A | ISS |
| KOG1238 | KOG | Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) | JGI | ISS | |
| PTHR11552 | Panther | GLUCOSE-METHANOL-CHOLINE (GMC) OXIDOREDUCTASE | JGI | ISS | |
| PTHR11552:SF31 | Panther | gb def: fldc protein [sphingomonas sp. lb126] | JGI | ISS | |
| PF00732 | PFAM | GMC oxidoreductase | JGI | ISS | |
| PF05199 | PFAM | GMC oxidoreductase | JGI | ISS | |
| UniRef100_G7KGL1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: (R)-mandelonitrile lyase n=1 Tax=Medicago truncatula RepID=G7KGL1_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1J5R8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J5R8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g12060 not represented in the dataset |
Glyma02g12060 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g05890 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g108400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g12060.2 sequence type=CDS gene model=Glyma02g12060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTCTTCCTCTACTACTCACAAGTCAATGCATTAGCTGATTGCAATATGGAACATCCACAAATTAACAAGGTTCATAAGCTTCTTCTCACAGCATTTGTTTTGTTCTTCCTTGCAAGTTTGGGTTTGTCTTTCCCTTTAGAGCCTCCAGGAAATAATAGGCAATGGCACATGACTTCAGATGTTAAGCAAGTGGCAGGAAAATCTTATGACTATATTATAGTCGGGGGAGGCACTTGTGGTTGTCCATTAGCTGCTACACTATCACAAGATTTCTCTGTGCTACTCATAGAAAGAGGTAGTTCACCATATGGGAATCCCTTGGTGATAGATAGGAGGTACTATGGTTTTCCATTAATTAAGACCGATAAGTACATGTCAGTGGCACAAAGTTTCACATCAGAGGATGGAGTTGGCAATGTGAGAGGAAGAGTTCTTGGAGGATCATCAGCTATAAATGGAGGGTTTTACAGTAGAGCAAGTGAGGAATTTGTTTGCAAAGCTGGTTGGGACAAGGAACTAGTCAAAGAAGCTTATGAATGGGTGGAATCCAAGGTTGTCTTTCCTCCTTTTTATCTTTCACCATGGCAATCTGTTGCTGAATTCAGCATTCTTGAAGCGGGAGTTTTACCATACAATGGCTTCAGCTTGGAACATATCAAAGGAACCAAGATTTCTGGGAGTGTGTTTGATGAGTTTGGAAAGAGACACACCTCAGCTGACCTTCTGAATGCAGGGAATCCAAATAACCTCACAGTCCTTCTAAATGCCACAGTCAAGAGTATCATCTTTCATCACAGTAGTAACAGGAATGAAACTAGAGCTAAGGGTATAAGGTTCATCCAGAGTAATGGCACCTTGGATGAAACCTATGAAGCATACATAAACAAAGCCAAGAATTCAAGTTCAAAGGGTGATGTCATTTTGGCAGCAGGTGCATTAGGTAGCCCTCAACTTATGATGCTAAGTGGCATAGGGCCAAAAGAACAGCTGAGAAGGTTCAACATTTCAATAGTGCATGAAATGAAAGGGGTTGGGCAAGGAATGCAAGACAACCCTTGCATAGCAGTTTTGGTGGACTCAAAGCCACAGAATAGGCTCCCTGATCCACCCCAAATTGCTGGCATAACAGATGACTTCAAGATCATAGTTGAAGCATCAATACTTCCCCTAACTTCCAACTCATCAAGGGTTAATGTTGCTGCCAAGATAGCAATGCCTACTTCAAAAGGGATGCTTGAACTGAACAACACTGACCCTAGGTTGAACCCTTCTGTGAGGTTCAACTATCTAGCAAGTGATGATGACATGGAAGAATGTGTCAAGATGACAAAGCTACTTGAGAGAATTGCAAGGTCGAAGTCTATTGCATTTTTCCTTGGAGAATCAAAGCAAGAAAAACTGACATCTACTGATATTGATCTAAGAAACTTCTGCAAGAAAAATGTGAGAACAATCTATCACTATCATGGGGGTTGCACGGTTGGATCAGTGGTTGATGAGCACTACAAGGTTTATGGAATAAAGGGATTGAGAATATTGGATGGCTCAACTTTTTCAGAGTCACCAGGCACAAACCCAATGGCCAGCCTTCTGATGCTAGGAAGGTATCAAGGACTCAAGATTCTAAGAGAAAGGAATGCAGAATCTGGCTTAAATGCCAAAGAGCACCGAAAATGA
>Glyma02g12060.2 sequence type=predicted peptide gene model=Glyma02g12060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLFLYYSQVNALADCNMEHPQINKVHKLLLTAFVLFFLASLGLSFPLEPPGNNRQWHMTSDVKQVAGKSYDYIIVGGGTCGCPLAATLSQDFSVLLIERGSSPYGNPLVIDRRYYGFPLIKTDKYMSVAQSFTSEDGVGNVRGRVLGGSSAINGGFYSRASEEFVCKAGWDKELVKEAYEWVESKVVFPPFYLSPWQSVAEFSILEAGVLPYNGFSLEHIKGTKISGSVFDEFGKRHTSADLLNAGNPNNLTVLLNATVKSIIFHHSSNRNETRAKGIRFIQSNGTLDETYEAYINKAKNSSSKGDVILAAGALGSPQLMMLSGIGPKEQLRRFNISIVHEMKGVGQGMQDNPCIAVLVDSKPQNRLPDPPQIAGITDDFKIIVEASILPLTSNSSRVNVAAKIAMPTSKGMLELNNTDPRLNPSVRFNYLASDDDMEECVKMTKLLERIARSKSIAFFLGESKQEKLTSTDIDLRNFCKKNVRTIYHYHGGCTVGSVVDEHYKVYGIKGLRILDGSTFSESPGTNPMASLLMLGRYQGLKILRERNAESGLNAKEHRK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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