Glyma02g11970 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma02g11970

Feature Type:	gene_model
Chromosome:	Gm02
Start:	10188660
stop:	10191634
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g11970

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G22260	AT	Annotation by Michelle Graham. TAIR10: RING/FYVE/PHD zinc finger superfamily protein \| chr5:7367707-7370192 REVERSE LENGTH=672	SoyBase	E_val: 0	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009556	GO-bp	Annotation by Michelle Graham. GO Biological Process: microsporogenesis	SoyBase	N/A	ISS
GO:0009846	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen germination	SoyBase	N/A	ISS
GO:0010208	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen wall assembly	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0048655	GO-bp	Annotation by Michelle Graham. GO Biological Process: tapetal layer morphogenesis	SoyBase	N/A	ISS
GO:0055046	GO-bp	Annotation by Michelle Graham. GO Biological Process: microgametogenesis	SoyBase	N/A	ISS
GO:0071367	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to brassinosteroid stimulus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1844	KOG	PHD Zn-finger proteins	JGI		ISS
PTHR16286	Panther	MIXED-LINEAGE LEUKEMIA 5, MLL5	JGI		ISS
PTHR16286:SF4	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00628	PFAM	PHD-finger	JGI		ISS
UniRef100_G7KF85	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Histone-lysine N-methyltransferase MLL5 n=1 Tax=Medicago truncatula RepID=G7KF85_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233773F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233773F related cluster n=1 Tax=unknown RepID=UPI000233773F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g11970

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g11970 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g107600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g11970

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g11970

Limit To All Plant Sequences

>Glyma02g11970.1   sequence type=CDS   gene model=Glyma02g11970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGAAAGTTGACGTAGTTGGGAACAAAAAAAGGAAGAGGTGTGGGAAGGTTTTCAGGTTCAAGAATTTTGGTGAACCTGGATACCCTGTTATGTTTAATGGGCCATTTCGTGAGAACGTGAATGCATTACTTGAATATGCAAATTTGGAGAGTAATTTAAGCATGGAAATGCCAATGTGGTCTTTTCAACTTGAAGTTCATCACCACCCACCTTTGCATATCTTGTTGTTTGTGATTGAAGAGCCAATAGAGGCAGCATTGAATCGTCACTGCAAGCATTGTCAATACGTTGCACAGGCTGGGGCAATCATTTCATTTGCAATAAGAAGTATCACTTTGTGTTGCCCTCAAAGGAGGCACTGGCTACCTGCACAAGCTGTGAAGGTTGCTGTGATGCAGTTACTACAATTAATAATGGGTCATATGATGCATGGTGTTTTTCACTCTAATGGATTCGGGCATTTGCTTTGTATCAATGGATTGGAAATGGGTTCGAATTTGGCTGGGAACCAGATCATGGAGTTTTGGAACCGTTTGTGCTACGGATTGCAAGCAAGGAAGGTGAGTTTGAATGACATTTCACAAAAGAGAGGAATGGAACTAAGACTTGTGAATGGAATAGCATACAACGAGTCATGGTTTGGCCATTGGGGTTACAAATTTGGTCGAGGATGCTTTGGTGTAACTCAATCCATGTACCACAAGGCCATACAAGCAATAAGAAGCATGCCATTATACTTAATCATACACCACATTGCCAATTCCAACCATGGCATTCCACTCATATTCTCAAGGTACCAAACACTTTCAGATCAATCCCTAGTGACCCTTGGTGACCTATTTTGTTACATGTTAGACCTTAAATCGCGCCTTCCTCGTGAAACATGCATTAGTTCCTATAACACAAATACCTTAGCAGTCGAGACCAATTGTCGTTGGTCCCCTAAAAGGATTGAGATGGCAACAAGGGTAATTGTTGAGGCCTTGAAAAGAACAAAGTTTAGATGGGTTTCAAGGCAAGAAGTTAGAGATGCTGCTCGTGCATACATTGGTGACACAGGATTGCTAGATTTTGTATTGAAGTCACTAGGGAACCATGTTGTAGGAAACTACTTGGTTCGTCGAAGCTTGAACCCTGTGACCAAAGTCTTGGAATATTGTTTAGAAGACATTTCTAATGTGCACCCTTATGATAATGAAGGCTTGGTTATGAGTAACAAAGTGAAGGACAAGTATAAGATCACAAGGGCTCAACTAATGAAGGACATGCTTTATTTGTATAAGTACATTCTTATAGATCCAAAACCAATGATGGGGTCAGAATTTCTCTCGGCTATACCATTGGCAGCAAGGATAATTCTTGATACCAAGTATTTTATAAAAGATTACTTTGGAGATATTCCTTACCAGGTTGAATTAGGCTCGAATGATAAACTCAACCTTTATTGTACAATTTGGTTGAGAAACAATGTTGGCAGTGATGAGTACTTAAACAAAGCCATTATGCCACCCCATGAATGTTTCACATTGAAAAGAAATGCTACTATCAATGACTTGAAGCTAGAAGTTGAAAGGAATTTTAGAGAAATTTATTGGGGGTTAAGGAGTTTTGTAGTGGAATCATTTCGGAATTTAAGTGTCAATAATGAGACAGAAATGGTTTTTGGTCTAATTGAAGTGGGTGGAAAAGTTGTGCTTGAGGGTTGGCAAGGTGACATAGGAATAAACATGATTGAGCAAATATGTGAAAGTGATCCGAACAATGGTATAATGGATTGCACTTGTGGAACTATAGAAGATGATGGTGAGAGGATGGTCTCGTGTGATATTTGTGAAATTTGGCAACATAGTAGGTGTGTTCGAATTCCAAATGATGAAGAAATTCCTCATATTTTTTTATGCAAAAAGTGCGAGCAAGAAATTGTCTTGTTTCCTTCGTTGCCATAG

Predicted protein sequences of Glyma02g11970

Limit To All Plant Sequences

>Glyma02g11970.1   sequence type=predicted peptide   gene model=Glyma02g11970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLKVDVVGNKKRKRCGKVFRFKNFGEPGYPVMFNGPFRENVNALLEYANLESNLSMEMPMWSFQLEVHHHPPLHILLFVIEEPIEAALNRHCKHCQYVAQAGAIISFAIRSITLCCPQRRHWLPAQAVKVAVMQLLQLIMGHMMHGVFHSNGFGHLLCINGLEMGSNLAGNQIMEFWNRLCYGLQARKVSLNDISQKRGMELRLVNGIAYNESWFGHWGYKFGRGCFGVTQSMYHKAIQAIRSMPLYLIIHHIANSNHGIPLIFSRYQTLSDQSLVTLGDLFCYMLDLKSRLPRETCISSYNTNTLAVETNCRWSPKRIEMATRVIVEALKRTKFRWVSRQEVRDAARAYIGDTGLLDFVLKSLGNHVVGNYLVRRSLNPVTKVLEYCLEDISNVHPYDNEGLVMSNKVKDKYKITRAQLMKDMLYLYKYILIDPKPMMGSEFLSAIPLAARIILDTKYFIKDYFGDIPYQVELGSNDKLNLYCTIWLRNNVGSDEYLNKAIMPPHECFTLKRNATINDLKLEVERNFREIYWGLRSFVVESFRNLSVNNETEMVFGLIEVGGKVVLEGWQGDIGINMIEQICESDPNNGIMDCTCGTIEDDGERMVSCDICEIWQHSRCVRIPNDEEIPHIFLCKKCEQEIVLFPSLP*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain