SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G15210 | AT | Annotation by Michelle Graham. TAIR10: homeobox protein 30 | chr5:4937874-4938689 REVERSE LENGTH=271 | SoyBase | E_val: 9.00E-52 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| PF04770 | PFAM | ZF-HD protein dimerisation region | JGI | ISS | |
| UniRef100_Q9ARE0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ZF-HD homeobox protein n=1 Tax=Flaveria trinervia RepID=Q9ARE0_FLATR | SoyBase | E_val: 2.00E-57 | ISS |
| UniRef100_UPI0002337880 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337880 related cluster n=1 Tax=unknown RepID=UPI0002337880 | SoyBase | E_val: 0 | ISS |
|
Glyma02g11950 not represented in the dataset |
Glyma02g11950 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g107300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g11950.1 sequence type=CDS gene model=Glyma02g11950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACCTAACCAAGGACACAAATTCTCAAACCCCTCCACAACCCAACACCACCACAAACGGTTCCCTCAAGCACCACCACCACCACCCAACCACCGTGTCACCGCCGCAACAGCCACCCTCCACGACGGTTTTCTACAAAGAGTGCCTCAAAAACCATGCAGCCAGCATAGGTGGTCACGCGCTTGATGGGTGCGGTGAATTCATGCCCTCTTCTTCATCCAACCCCAATGAACCGCGCTCGCTAACGTGCGCCGCGTGCGGATGCCACCGTAACTTCCACCGCCGCCGCGACACACAGGAAAATCATCACCGCTCCAACTCCAGGCCCAATTTCATAAGCTTCTACCACTCTCCGCCGCTGTCTCGTCACGGGCCGGGCCTGAGCCCAACTCCAAGCCCGATGTCGAGCCCAAGCCCGAGCCCCCCGCCAATCTCGCATCATTTCCCACCTTCCTCCCACCATTTCCAAGGTCCAATACCGGCCCACGGGCTTTTGGGCCTTGGAAATGAAAATCACCATCATCACATGAGTTTTAATTTTAACTCTTCTTCCCACTCCACCCAAGGAAACACGAGTGGAAAGAAGAGGCATAGGACCAAGTTCAGCCATGAACAGAAACAAAAAATGTACAATTTCGCCGAGAAATTGGGTTGGAGAATGCAGAAAGCAGAAGAAGGATTGGTGCAAGATTTCTGCAACGAGATTGGCGTTTCAAGAGGGGTCTTCAAGGTGTGGATGCACAACAACAAGAACACTTCTGCCAGGAACAAATCGTTGGAACCAGGTGAAAAAATCAATGGCACTGGTACTCATAGTAATAATAATAATAATCATCCTTACAACACAAACAGCACCAACGATGACACTCACTGA
>Glyma02g11950.1 sequence type=predicted peptide gene model=Glyma02g11950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDLTKDTNSQTPPQPNTTTNGSLKHHHHHPTTVSPPQQPPSTTVFYKECLKNHAASIGGHALDGCGEFMPSSSSNPNEPRSLTCAACGCHRNFHRRRDTQENHHRSNSRPNFISFYHSPPLSRHGPGLSPTPSPMSSPSPSPPPISHHFPPSSHHFQGPIPAHGLLGLGNENHHHHMSFNFNSSSHSTQGNTSGKKRHRTKFSHEQKQKMYNFAEKLGWRMQKAEEGLVQDFCNEIGVSRGVFKVWMHNNKNTSARNKSLEPGEKINGTGTHSNNNNNHPYNTNSTNDDTH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
