Report for Sequence Feature Glyma02g11900
Feature Type: gene_model
Chromosome: Gm02
Start: 10119468
stop: 10121841
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g11900
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G26870 AT
Annotation by Michelle Graham. TAIR10: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | chr1:9312856-9314983 FORWARD LENGTH=425
SoyBase E_val: 2.00E-108 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0007275 GO-bp
Annotation by Michelle Graham. GO Biological Process: multicellular organismal development
SoyBase N/A ISS
GO:0009733 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus
SoyBase N/A ISS
GO:0045770 GO-bp
Annotation by Michelle Graham. GO Biological Process: positive regulation of asymmetric cell division
SoyBase N/A ISS
GO:0048103 GO-bp
Annotation by Michelle Graham. GO Biological Process: somatic stem cell division
SoyBase N/A ISS
GO:0048829 GO-bp
Annotation by Michelle Graham. GO Biological Process: root cap development
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
PF02365 PFAM
No apical meristem (NAM) protein
JGI ISS
UniRef100_G7KDY3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: NAC domain protein n=1 Tax=Medicago truncatula RepID=G7KDY3_MEDTR
SoyBase E_val: 4.00E-174 ISS
UniRef100_I1JE41 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JE41_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma02g11900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma02g11900
Paralog Evidence Comments
Glyma01g05680 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma02g11900 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.02g107000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma02g11900
Transcripts of Glyma02g11900
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g11900.2 sequence type=transcript gene model=Glyma02g11900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
CAAGTAAGACACATACCTCTCTCTTAGTTCATATTACACTAAACTTAATTAGCTTGGCTTTCTCTCTCTCTATATATTCTTTTGTTATTATTTAAAGGTCTCTAATGGCATACATTATCTAACAGATTTATGATTTTGATGTGTGTAGAGTTGGCCACCACAGGAGAAAAAGAGTGGTATTTCTACTGTCCCAGGGACAGAAAATACAGAAACAGTGCAAGGCCTAATAGGGTAACTGGAGCTGGGTTCTGGAAAGCTACAGGGACTGATAGGCCTATCTACTCCTCAGAAGGTTCAAAGTGCATTGGCCTCAAGAAATCCCTAGTCTTTTACAAAGGTAGAGCTGCCAAAGGAGTCAAAACTGATTGGATGATGCATGAGTTCAGGCTACCTTCTCTCACTGACTCACTATCTCCAAAGTACATAGACAAGATCACCATTCCTGCTAATGAATCTTGGGCTATCTGCAGGATATTCAAGAAAACCAATGCTACAGCTCAAAGAGCTTTGTCTCACTCTTGGGTCTCTTCCCTACCTGAAACAAGAACCTCTGATCATCATATCCTAACCAAAGATCAAGACAACACTACCCAGTTTTGTTCAGACAACATGTCAATGACAAAGAAAACTACCTTAGCCAGCCAGTACTGTTCTAACAATTACAATGATTCACAACCCTTAACCACTAATAGCAGTACTCTTTGTCCCTTAGATGTGGCCTCATGCAAATCCATCATTAACCCATTGCTTTACAAAGCCTTTGATCATTTTCCCATTTCAAATGAAGACCTTAGCACTAGCTTGTTATTCTCATCACCCCCCTTTGAAACATCAGAAACTAATCCCAAATCTACAATAATGGACGTTTCTTCCATGCTGTTGAACATGTCATCCTCAGTGCTTGGAGATTTTAACAAGACTACTTCAGAGGACACAAATACAAATGCAGCTTCAAACTTTGGTGTGTTGCAAGAGCACTGTAGTGGCTACCCAATACCATTTCTACGTGAGAATATGCAAACCACATTTGGTAACCAGCAACAACAATATTGTGATAATATTTATGCATTGGTAAAGGGTCCTAATGTGAATGTGCCTCGTGTTGATGACCCAGAGTTGGAGTTGGAGACAGTAGTACAACGATCCATTGGGTTTCCATTAAGTGTTACTATGCCTTTGAATATTGGAGATGCCTGGAAGTCAAATAATCTGCTTTGGGATACTTCCTCTTTTCCTTGTGATGTGCCATCTAGTTATTATTCCACAACTAAGTGCTATACTTAGTTGTCCATTTTTTTTATTTTAATTAGACAAATTAGAAGCCGTTGTTTTTGTAGCTTCTAGTAGCTAGTAACAACTACTAAGTCTGACTTTTTAGCTTAGATTTCTGTTCAATTTACATTAGCAAAGTAGGACTTATTATTATTATTAATTTGAAACTTTTTTTGTAACTTAAGGTTATGTTTTAACTCAAATGTCTATGGAATAGAAATTTGACGGC
Coding sequences of Glyma02g11900
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g11900.1 sequence type=CDS gene model=Glyma02g11900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATGGAAGAGAGAAATAATAATGATGCTGCTGAGAAACTGGATGAAGTTATGCTACCAGGGTTTAGGTTTCATCCAACTGATGAGGAGCTTGTAGGGTTTTACCTCAAGAGAAAGATTCAACAACGCCCTTTGACTATTGAGCTCATCAAGCAGCTTGATATCTACAAATTTGACCCTTGGGATCTTCCAAAGTTGGCCACCACAGGAGAAAAAGAGTGGTATTTCTACTGTCCCAGGGACAGAAAATACAGAAACAGTGCAAGGCCTAATAGGGTAACTGGAGCTGGGTTCTGGAAAGCTACAGGGACTGATAGGCCTATCTACTCCTCAGAAGGTTCAAAGTGCATTGGCCTCAAGAAATCCCTAGTCTTTTACAAAGGTAGAGCTGCCAAAGGAGTCAAAACTGATTGGATGATGCATGAGTTCAGGCTACCTTCTCTCACTGACTCACTATCTCCAAAGTACATAGACAAGATCACCATTCCTGCTAATGAATCTTGGGCTATCTGCAGGATATTCAAGAAAACCAATGCTACAGCTCAAAGAGCTTTGTCTCACTCTTGGGTCTCTTCCCTACCTGAAACAAGAACCTCTGATCATCATATCCTAACCAAAGATCAAGACAACACTACCCAGTTTTGTTCAGACAACATGTCAATGACAAAGAAAACTACCTTAGCCAGCCAGTACTGTTCTAACAATTACAATGATTCACAACCCTTAACCACTAATAGCAGTACTCTTTGTCCCTTAGATGTGGCCTCATGCAAATCCATCATTAACCCATTGCTTTACAAAGCCTTTGATCATTTTCCCATTTCAAATGAAGACCTTAGCACTAGCTTGTTATTCTCATCACCCCCCTTTGAAACATCAGAAACTAATCCCAAATCTACAATAATGGACGTTTCTTCCATGCTGTTGAACATGTCATCCTCAGTGCTTGGAGATTTTAACAAGACTACTTCAGAGGACACAAATACAAATGCAGCTTCAAACTTTGGTGTGTTGCAAGAGCACTGTAGTGGCTACCCAATACCATTTCTACGTGAGAATATGCAAACCACATTTGGTAACCAGCAACAACAATATTGTGATAATATTTATGCATTGGTAAAGGGTCCTAATGTGAATGTGCCTCGTGTTGATGACCCAGAGTTGGAGTTGGAGACAGTAGTACAACGATCCATTGGGTTTCCATTAAGTGTTACTATGCCTTTGAATATTGGAGATGCCTGGAAGTCAAATAATCTGCTTTGGGATACTTCCTCTTTTCCTTGTGATGTGCCATCTAGTTATTATTCCACAACTAAGTGCTATACTTAG
>Glyma02g11900.2 sequence type=CDS gene model=Glyma02g11900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATTTTGATGTGTGTAGAGTTGGCCACCACAGGAGAAAAAGAGTGGTATTTCTACTGTCCCAGGGACAGAAAATACAGAAACAGTGCAAGGCCTAATAGGGTAACTGGAGCTGGGTTCTGGAAAGCTACAGGGACTGATAGGCCTATCTACTCCTCAGAAGGTTCAAAGTGCATTGGCCTCAAGAAATCCCTAGTCTTTTACAAAGGTAGAGCTGCCAAAGGAGTCAAAACTGATTGGATGATGCATGAGTTCAGGCTACCTTCTCTCACTGACTCACTATCTCCAAAGTACATAGACAAGATCACCATTCCTGCTAATGAATCTTGGGCTATCTGCAGGATATTCAAGAAAACCAATGCTACAGCTCAAAGAGCTTTGTCTCACTCTTGGGTCTCTTCCCTACCTGAAACAAGAACCTCTGATCATCATATCCTAACCAAAGATCAAGACAACACTACCCAGTTTTGTTCAGACAACATGTCAATGACAAAGAAAACTACCTTAGCCAGCCAGTACTGTTCTAACAATTACAATGATTCACAACCCTTAACCACTAATAGCAGTACTCTTTGTCCCTTAGATGTGGCCTCATGCAAATCCATCATTAACCCATTGCTTTACAAAGCCTTTGATCATTTTCCCATTTCAAATGAAGACCTTAGCACTAGCTTGTTATTCTCATCACCCCCCTTTGAAACATCAGAAACTAATCCCAAATCTACAATAATGGACGTTTCTTCCATGCTGTTGAACATGTCATCCTCAGTGCTTGGAGATTTTAACAAGACTACTTCAGAGGACACAAATACAAATGCAGCTTCAAACTTTGGTGTGTTGCAAGAGCACTGTAGTGGCTACCCAATACCATTTCTACGTGAGAATATGCAAACCACATTTGGTAACCAGCAACAACAATATTGTGATAATATTTATGCATTGGTAAAGGGTCCTAATGTGAATGTGCCTCGTGTTGATGACCCAGAGTTGGAGTTGGAGACAGTAGTACAACGATCCATTGGGTTTCCATTAAGTGTTACTATGCCTTTGAATATTGGAGATGCCTGGAAGTCAAATAATCTGCTTTGGGATACTTCCTCTTTTCCTTGTGATGTGCCATCTAGTTATTATTCCACAACTAAGTGCTATACTTAG
Predicted protein sequences of Glyma02g11900
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g11900.1 sequence type=predicted peptide gene model=Glyma02g11900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MMEERNNNDAAEKLDEVMLPGFRFHPTDEELVGFYLKRKIQQRPLTIELIKQLDIYKFDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLTDSLSPKYIDKITIPANESWAICRIFKKTNATAQRALSHSWVSSLPETRTSDHHILTKDQDNTTQFCSDNMSMTKKTTLASQYCSNNYNDSQPLTTNSSTLCPLDVASCKSIINPLLYKAFDHFPISNEDLSTSLLFSSPPFETSETNPKSTIMDVSSMLLNMSSSVLGDFNKTTSEDTNTNAASNFGVLQEHCSGYPIPFLRENMQTTFGNQQQQYCDNIYALVKGPNVNVPRVDDPELELETVVQRSIGFPLSVTMPLNIGDAWKSNNLLWDTSSFPCDVPSSYYSTTKCYT*
>Glyma02g11900.2 sequence type=predicted peptide gene model=Glyma02g11900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MILMCVELATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLTDSLSPKYIDKITIPANESWAICRIFKKTNATAQRALSHSWVSSLPETRTSDHHILTKDQDNTTQFCSDNMSMTKKTTLASQYCSNNYNDSQPLTTNSSTLCPLDVASCKSIINPLLYKAFDHFPISNEDLSTSLLFSSPPFETSETNPKSTIMDVSSMLLNMSSSVLGDFNKTTSEDTNTNAASNFGVLQEHCSGYPIPFLRENMQTTFGNQQQQYCDNIYALVKGPNVNVPRVDDPELELETVVQRSIGFPLSVTMPLNIGDAWKSNNLLWDTSSFPCDVPSSYYSTTKCYT*