SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G47620 | AT | Annotation by Michelle Graham. TAIR10: TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 | chr3:17559004-17560473 FORWARD LENGTH=489 | SoyBase | E_val: 6.00E-52 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0008283 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell proliferation | SoyBase | N/A | ISS |
| GO:0009735 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cytokinin stimulus | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0009739 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus | SoyBase | N/A | ISS |
| GO:0010029 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of seed germination | SoyBase | N/A | ISS |
| GO:0010229 | GO-bp | Annotation by Michelle Graham. GO Biological Process: inflorescence development | SoyBase | N/A | ISS |
| GO:0031347 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of defense response | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| PTHR11584 | Panther | SERINE/THREONINE PROTEIN KINASE | JGI | ISS | |
| PTHR11584:SF275 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF03634 | PFAM | TCP family transcription factor | JGI | ISS | |
| UniRef100_G7KCJ2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: TCP family transcription factor-like protein n=1 Tax=Medicago truncatula RepID=G7KCJ2_MEDTR | SoyBase | E_val: 9.00E-164 | ISS |
| UniRef100_UPI0002337794 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337794 related cluster n=1 Tax=unknown RepID=UPI0002337794 | SoyBase | E_val: 0 | ISS |
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Glyma02g11781 not represented in the dataset |
Glyma02g11781 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g05410 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g105900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g11781.2 sequence type=transcript gene model=Glyma02g11781 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACCTATGCTTTTTCAAATTTTACTGAGCCCTTATTATTCCCACTCATTATTTTTGTTGCTTAAAGCTTGCCCTCTCCTCTCCCTTATCCTCTATTCACTCATTCTCTCTCTCTCTCTCTCTCTCAACACAGAGAAAACAACCCAGCTGCAATAATCTCCCATCTGAAAGGAATTCCATGCTCCACAAAACACACAAACAGAGAAAAGAGAGACCCACTAGCCCACTAAGCGATAGAAATTGAGGGTCACCTCATCACACCTCCTTAGCTACTACACACAAACACAACAACATACATAGCAAAAAAATATATAGAAAAAGAAATCTAGTGGCAGTACTACTACTTACTACTTCCACTATAGCTGCTAGCTACCAGATAGGAGGAAAAGAATCATGGAATTGGAAGCTGATCATCAAAATGGGATTCGAAGCAGACTCAATTTCCCTCTGCAGCTGTTAGAGAAAAAGGACATTGATGACGTCACGGAACAACCTTGTTCCACCACCAGCGTGGTAACTGCTACTACTACTGCTATTACTACTACTACTACTTCAGATAACAACGACCTCCACTTGGCGGAGCAGTCCAAGAAGCCTCCGCCGAAACGGAGTTCCACCAAGGACCGCCACACGAAGGTCGATGGGCGAGGCCGCCGGATCCGCATGCCGGCGGCCTGCGCTGCCAGAGTGTTCCAGCTCACGCGTGAGCTGGGACATAAGTCTGACGGCGAGACCATCGAGTGGCTCCTCCAGCAGGCGGAGCCCGCCGTCATCGCCGCCACTGGGACAGGCACCATTCCCGCCAACTTCACCTCCCTCAACATCTCCCTCCGCAGCTCTGGCTCCACCATGTCGGCCCCGTCGCACTACTTCCGCGGAAACTACTTCAACCCTAGCACGTTCTCCACGTCCGCCGCCGCGGCGGCGGCGGCTCAGCTGAGAAGCCGCGCAGAGTGGGACCGGAGCATGAGCATGGTGATGGAGGATTCTCGAAGGAGCATGCTGGAGAACACTTCTTCAATCTCCGCAATTTTGAATTTCAACCCTATGGGTAACGTTAATGTAATTCAACAAGCGAAACAAGAGCTTCGGGAAGAATCCGGCGGGGGCGGCGGTCTTGAATCGGTGGCTTCTGATTCCGATGGAAGCTTAGGGAGAAAGAGAAGGCCAGAGCAAGAACTATCACAAATGGGAAGCTATTTGATACAATCAAGCACAGGGTCGCTTCCGGCGAGCCACGCTTCCAATACGGCGGCGTTTTGGATGGTGGCGGGTCACGGCAACCAAGCCATGAGTGGTGGTGGCAGCGGCGGCGGTGGCAACAATGGTAGCAGCGATAATAATCCCATTTGGGCAATTCCCTCTGTTGGGAATAGTGGTGTGTATAGAGGAGCTATGTCTGCTCCAGGTGGCATTCATTTCATGAATTTCGCTTCTCCGATGAACCTTATGCCCGGAGGTCAACTAGGTTCCGGTATCGTTGGTGGCGGTGGCGGCGGTGGTGGCAACGGCGGTGCTCAACTTCTAAGTGAAAGTAACTTAGGCATGCTTGCAGCCCTTAATGCCTACAGGCAGATTCCGGCGAACGGCGTCTCGGAGCCTCCGGGCAGTGCCGGGCAACATCACGGCGGAGACGATGGACGTGATTCCACCAGTCAACATTCCTGAGGGTCAAAATAATCACAAGTGTATGATCTGATGCTAGCTTCTTAATTTTTCTTTTAATTACTATATTATTCCTAGTGCTATTATTACTACTATTAGCTCTACTACTAATTAGTGATTTGCATAATATATATTAAATACGTAATTATATATGTTATGTCCATTTGCAAAAATATGCAAGAAGCGCAAGTTTGATTGCTTTGGTATATTGAGTTCAGTTTGCGGTTTTGGTTGGACCTTTGGTGTGATTTTGCTGAGGTTGATCATGTTAGGGTTTAATTCGAGAAGAAATTAATACACGTATATTTTAACAATGGTATTCCTCTATATTTCATATACGTGCTATGAAGGTGTTTAATTTAGATAGTTAGTTTCTTATTAAAAATCAGATCGCTGTCTTATGATCTGGGATATGATTAATTTGTTGCTTGGTGCTGCACTATCACTTGTCATCATTTAATATATAATTTTATAAT
>Glyma02g11781.1 sequence type=CDS gene model=Glyma02g11781 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAATTGGAAGCTGATCATCAAAATGGGATTCGAAGCAGACTCAATTTCCCTCTGCAGCTGTTAGAGAAAAAGGACATTGATGACGTCACGGAACAACCTTGTTCCACCACCAGCGTGGTAACTGCTACTACTACTGCTATTACTACTACTACTACTTCAGATAACAACGACCTCCACTTGGCGGAGCAGTCCAAGAAGCCTCCGCCGAAACGGAGTTCCACCAAGGACCGCCACACGAAGGTCGATGGGCGAGGCCGCCGGATCCGCATGCCGGCGGCCTGCGCTGCCAGAGTGTTCCAGCTCACGCGTGAGCTGGGACATAAGTCTGACGGCGAGACCATCGAGTGGCTCCTCCAGCAGGCGGAGCCCGCCGTCATCGCCGCCACTGGGACAGGCACCATTCCCGCCAACTTCACCTCCCTCAACATCTCCCTCCGCAGCTCTGGCTCCACCATGTCGGCCCCGTCGCACTACTTCCGCGGAAACTACTTCAACCCTAGCACGTTCTCCACGTCCGCCGCCGCGGCGGCGGCGGCTCAGCTGAGAAGCCGCGCAGAGTGGGACCGGAGCATGAGCATGGTGATGGAGGATTCTCGAAGGAGCATGCTGGAGAACACTTCTTCAATCTCCGCAATTTTGAATTTCAACCCTATGGGTAACGTTAATGTAATTCAACAAGCGAAACAAGAGCTTCGGGAAGAATCCGGCGGGGGCGGCGGTCTTGAATCGGTGGCTTCTGATTCCGATGGAAGCTTAGGGAGAAAGAGAAGGCCAGAGCAAGAACTATCACAAATGGGAAGCTATTTGATACAATCAAGCACAGGGTCGCTTCCGGCGAGCCACGCTTCCAATACGGCGGCGTTTTGGATGGTGGCGGGTCACGGCAACCAAGCCATGAGTGGTGGTGGCAGCGGCGGCGGTGGCAACAATGGTAGCAGCGATAATAATCCCATTTGGGCAATTCCCTCTGTTGGGAATAGTGGTGTGTATAGAGGAGCTATGTCTGCTCCAGGTGGCATTCATTTCATGAATTTCGCTTCTCCGATGAACCTTATGCCCGGAGGTCAACTAGGTTCCGGTATCGTTGGTGGCGGTGGCGGCGGTGGTGGCAACGGCGGTGCTCAACTTCTAAGTGAAAGTAACTTAGGCATGCTTGCAGCCCTTAATGCCTACAGGCAGATTCCGGCGAACGGCGTCTCGGAGCCTCCGGGCAGTGCCGGGCAACATCACGGCGGAGACGATGGACGTGATTCCACCAGTCAACATTCCTGA >Glyma02g11781.2 sequence type=CDS gene model=Glyma02g11781 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAATTGGAAGCTGATCATCAAAATGGGATTCGAAGCAGACTCAATTTCCCTCTGCAGCTGTTAGAGAAAAAGGACATTGATGACGTCACGGAACAACCTTGTTCCACCACCAGCGTGGTAACTGCTACTACTACTGCTATTACTACTACTACTACTTCAGATAACAACGACCTCCACTTGGCGGAGCAGTCCAAGAAGCCTCCGCCGAAACGGAGTTCCACCAAGGACCGCCACACGAAGGTCGATGGGCGAGGCCGCCGGATCCGCATGCCGGCGGCCTGCGCTGCCAGAGTGTTCCAGCTCACGCGTGAGCTGGGACATAAGTCTGACGGCGAGACCATCGAGTGGCTCCTCCAGCAGGCGGAGCCCGCCGTCATCGCCGCCACTGGGACAGGCACCATTCCCGCCAACTTCACCTCCCTCAACATCTCCCTCCGCAGCTCTGGCTCCACCATGTCGGCCCCGTCGCACTACTTCCGCGGAAACTACTTCAACCCTAGCACGTTCTCCACGTCCGCCGCCGCGGCGGCGGCGGCTCAGCTGAGAAGCCGCGCAGAGTGGGACCGGAGCATGAGCATGGTGATGGAGGATTCTCGAAGGAGCATGCTGGAGAACACTTCTTCAATCTCCGCAATTTTGAATTTCAACCCTATGGGTAACGTTAATGTAATTCAACAAGCGAAACAAGAGCTTCGGGAAGAATCCGGCGGGGGCGGCGGTCTTGAATCGGTGGCTTCTGATTCCGATGGAAGCTTAGGGAGAAAGAGAAGGCCAGAGCAAGAACTATCACAAATGGGAAGCTATTTGATACAATCAAGCACAGGGTCGCTTCCGGCGAGCCACGCTTCCAATACGGCGGCGTTTTGGATGGTGGCGGGTCACGGCAACCAAGCCATGAGTGGTGGTGGCAGCGGCGGCGGTGGCAACAATGGTAGCAGCGATAATAATCCCATTTGGGCAATTCCCTCTGTTGGGAATAGTGGTGTGTATAGAGGAGCTATGTCTGCTCCAGGTGGCATTCATTTCATGAATTTCGCTTCTCCGATGAACCTTATGCCCGGAGGTCAACTAGGTTCCGGTATCGTTGGTGGCGGTGGCGGCGGTGGTGGCAACGGCGGTGCTCAACTTCTAAGTGAAAGTAACTTAGGCATGCTTGCAGCCCTTAATGCCTACAGGCAGATTCCGGCGAACGGCGTCTCGGAGCCTCCGGGCAGTGCCGGGCAACATCACGGCGGAGACGATGGACGTGATTCCACCAGTCAACATTCCTGA
>Glyma02g11781.1 sequence type=predicted peptide gene model=Glyma02g11781 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MELEADHQNGIRSRLNFPLQLLEKKDIDDVTEQPCSTTSVVTATTTAITTTTTSDNNDLHLAEQSKKPPPKRSSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTMSAPSHYFRGNYFNPSTFSTSAAAAAAAQLRSRAEWDRSMSMVMEDSRRSMLENTSSISAILNFNPMGNVNVIQQAKQELREESGGGGGLESVASDSDGSLGRKRRPEQELSQMGSYLIQSSTGSLPASHASNTAAFWMVAGHGNQAMSGGGSGGGGNNGSSDNNPIWAIPSVGNSGVYRGAMSAPGGIHFMNFASPMNLMPGGQLGSGIVGGGGGGGGNGGAQLLSESNLGMLAALNAYRQIPANGVSEPPGSAGQHHGGDDGRDSTSQHS* >Glyma02g11781.2 sequence type=predicted peptide gene model=Glyma02g11781 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MELEADHQNGIRSRLNFPLQLLEKKDIDDVTEQPCSTTSVVTATTTAITTTTTSDNNDLHLAEQSKKPPPKRSSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTMSAPSHYFRGNYFNPSTFSTSAAAAAAAQLRSRAEWDRSMSMVMEDSRRSMLENTSSISAILNFNPMGNVNVIQQAKQELREESGGGGGLESVASDSDGSLGRKRRPEQELSQMGSYLIQSSTGSLPASHASNTAAFWMVAGHGNQAMSGGGSGGGGNNGSSDNNPIWAIPSVGNSGVYRGAMSAPGGIHFMNFASPMNLMPGGQLGSGIVGGGGGGGGNGGAQLLSESNLGMLAALNAYRQIPANGVSEPPGSAGQHHGGDDGRDSTSQHS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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