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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G34050 | AT | Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:16310844-16311973 FORWARD LENGTH=259 | SoyBase | E_val: 6.00E-165 | ISS |
| GO:0006598 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polyamine catabolic process | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009698 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phenylpropanoid metabolic process | SoyBase | N/A | ISS |
| GO:0009805 | GO-bp | Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process | SoyBase | N/A | ISS |
| GO:0009963 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0019344 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process | SoyBase | N/A | ISS |
| GO:0042398 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular modified amino acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0008171 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: O-methyltransferase activity | SoyBase | N/A | ISS |
| GO:0042409 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: caffeoyl-CoA O-methyltransferase activity | SoyBase | N/A | ISS |
| KOG1663 | KOG | O-methyltransferase | JGI | ISS | |
| PTHR10509 | Panther | O-METHYLTRANSFERASE | JGI | ISS | |
| PF01596 | PFAM | O-methyltransferase | JGI | ISS | |
| UniRef100_I1JE07 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=3 Tax=Fabaceae RepID=I1JE07_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q0N3X1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Caffeoyl coenzyme A 3-O-methyltransferase 1 n=2 Tax=Leucaena leucocephala RepID=Q0N3X1_LEULE | SoyBase | E_val: 7.00E-171 | ISS |
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Glyma02g11530 not represented in the dataset |
Glyma02g11530 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g33780 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g103500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g11530.2 sequence type=transcript gene model=Glyma02g11530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAAGCAAACAAGAGCATATGGATCTGTGGAGCCTAAATGCCTAAACCATGCTGCTCAATGCACAAGCATTACTATAAGACAAACCTCGCCAACCCCGGACCGGACGCCAACCGGTCCAACCAAACATCACACCGGTTCGAACCGGCCTTTTCCTTCCTTATATCAATCACTCTCCTACATCCCCCCACTTCATCAAGCTCCAATTATCAACTCTTTCAAAAGGGAGAAGAAAAGGAAAGGAAACAAAACGCACAAAGGATTATTATAGCAATGGCAGAACAAAACCAAAACCAGACAACTGAAGCTGGAAGGCACCAAGAGGTTGGCCACAAGAGCCTTCTCCAGAGTGATGCTCTTTACCAGTATATTCTGGAGACCAGTGTCTACCCAAGAGAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATGGAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCTTAAGCTCATCAATGCCAAGAACACCATGGAAATTGGTGTCTACACTGGATATTCACTTCTTGCCACCGCTCTCGCTCTTCCTGAAGATGGAAAGATCTTGGCCATGGATATTAACAGGGAGAATTATGAATTGGGTTTGCCAGTAATTAAGAAAGCTGGTGTTGACCACAAAATTGAATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGATGTAAGTTTTTCTATCTCTCAATGTCCCAATGGAAAAAGAAAAATATTTTTAATGTCTCAAATTTAAGATCTGTCTTTTTTTAATCATTTACTTTAAAATTTATATTTTCAAACTTTTGAATTTACGAAATGTTTTTTTAGTCTTTTTTATGGTAAAAAAATCATCATATATTGTGCATCAAATCATAAAAAATCAGTCATGAAAGACTAAAAAAACATTTCTTGAATTCAAGGTAAAAAAAATGCAAGTTTTTCCATCACTCAATAAAAAATAATCAATTTAGAGGAGTAAAAAGAGGGTAATTGGGTAGCGATTGCGTGTGGTGAAATGCAGGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGACAACTACCTCAACTACCACAAGAGGTTGATAGAGCTTGTCAAAGTTGGGGGAGTGATCGGGTACGACAACACCCTATGGAACGGCTCTGTGGTGGCACCCCCAGATGCTCCTCTCAGGAAGTACGTTAGATACTACAGGGACTTCGTGCTCGAGCTCAACAAGGCACTCGCTGTGGACCCCAGGATCGAGATTTGCATGCTCCCGGTTGGTGATGGAATCACTATATGCCGTCGGATCAAGTGATTCTGATTTTCTGATAATCACACAATCGTGGACCAAGACCACCGTTGCTTCTTCTGCACCCTAGTGATGATTGGTCATCATTGAGTGGCACCTGCTAATGCATTTAAAAGCAATCGATATTTTCCTTTTATTTTTTTTTCTTCAAAATATTTGTGTTTGTACTTTTCTTTTCTCTATTATTCATGTGGAAAACGGTGGACAATTAATTATATGCAAATGACTTTTTTTCTTATATGATTTACTTCCCACAACTTGGTTTATTGTGAAGCCCAATTAAGTGTTAACCTTGGTTTATTAGAAAGAGGATAT
>Glyma02g11530.1 sequence type=CDS gene model=Glyma02g11530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCTAAACCATGCTGCTCAATGCACAAGCATTACTATAAGACAAACCTCGCCAACCCCGGACCGGACGCCAACCGGTCCAACCAAACATCACACCGGTTCGAACCGGCCTTTTCCTTCCTTATATCAATCACTCTCCTACATCCCCCCACTTCATCAAGCTCCAATTATCAACTCTTTCAAAAGGGAGAAGAAAAGGAAAGGAAACAAAACGCACAAAGGATTATTATAGCAATGGCAGAACAAAACCAAAACCAGACAACTGAAGCTGGAAGGCACCAAGAGGTTGGCCACAAGAGCCTTCTCCAGAGTGATGCTCTTTACCAGTATATTCTGGAGACCAGTGTCTACCCAAGAGAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATGGAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCTTAAGCTCATCAATGCCAAGAACACCATGGAAATTGGTGTCTACACTGGATATTCACTTCTTGCCACCGCTCTCGCTCTTCCTGAAGATGGAAAGATCTTGGCCATGGATATTAACAGGGAGAATTATGAATTGGGTTTGCCAGTAATTAAGAAAGCTGGTGTTGACCACAAAATTGAATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGATGAGAAGAACCATGGGAGCTATGACTTCATCTTTGTGGACGCAGACAAGGACAACTACCTCAACTACCACAAGAGGTTGATAGAGCTTGTCAAAGTTGGGGGAGTGATCGGGTACGACAACACCCTATGGAACGGCTCTGTGGTGGCACCCCCAGATGCTCCTCTCAGGAAGTACGTTAGATACTACAGGGACTTCGTGCTCGAGCTCAACAAGGCACTCGCTGTGGACCCCAGGATCGAGATTTGCATGCTCCCGGTTGGTGATGGAATCACTATATGCCGTCGGATCAAGTGA >Glyma02g11530.2 sequence type=CDS gene model=Glyma02g11530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCTAAACCATGCTGCTCAATGCACAAGCATTACTATAAGACAAACCTCGCCAACCCCGGACCGGACGCCAACCGGTCCAACCAAACATCACACCGGTTCGAACCGGCCTTTTCCTTCCTTATATCAATCACTCTCCTACATCCCCCCACTTCATCAAGCTCCAATTATCAACTCTTTCAAAAGGGAGAAGAAAAGGAAAGGAAACAAAACGCACAAAGGATTATTATAGCAATGGCAGAACAAAACCAAAACCAGACAACTGAAGCTGGAAGGCACCAAGAGGTTGGCCACAAGAGCCTTCTCCAGAGTGATGCTCTTTACCAGTATATTCTGGAGACCAGTGTCTACCCAAGAGAACCTGAATCCATGAAAGAACTGAGAGAGTTGACAGCAAAACACCCATGGAACATCATGACAACCTCTGCAGACGAAGGGCAATTCTTGAACATGCTCCTTAAGCTCATCAATGCCAAGAACACCATGGAAATTGGTGTCTACACTGGATATTCACTTCTTGCCACCGCTCTCGCTCTTCCTGAAGATGGAAAGATCTTGGCCATGGATATTAACAGGGAGAATTATGAATTGGGTTTGCCAGTAATTAAGAAAGCTGGTGTTGACCACAAAATTGAATTCAGAGAAGGTCCTGCTCTCCCAGTTCTTGATGAAATGGTTAAAGATGTAAGTTTTTCTATCTCTCAATGTCCCAATGGAAAAAGAAAAATATTTTTAATGTCTCAAATTTAA
>Glyma02g11530.1 sequence type=predicted peptide gene model=Glyma02g11530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPKPCCSMHKHYYKTNLANPGPDANRSNQTSHRFEPAFSFLISITLLHPPTSSSSNYQLFQKGEEKERKQNAQRIIIAMAEQNQNQTTEAGRHQEVGHKSLLQSDALYQYILETSVYPREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIKKAGVDHKIEFREGPALPVLDEMVKDEKNHGSYDFIFVDADKDNYLNYHKRLIELVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRRIK* >Glyma02g11530.2 sequence type=predicted peptide gene model=Glyma02g11530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPKPCCSMHKHYYKTNLANPGPDANRSNQTSHRFEPAFSFLISITLLHPPTSSSSNYQLFQKGEEKERKQNAQRIIIAMAEQNQNQTTEAGRHQEVGHKSLLQSDALYQYILETSVYPREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIKKAGVDHKIEFREGPALPVLDEMVKDVSFSISQCPNGKRKIFLMSQI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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