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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G49740 | AT | Annotation by Michelle Graham. TAIR10: PLC-like phosphodiesterases superfamily protein | chr1:18407728-18409468 FORWARD LENGTH=359 | SoyBase | E_val: 0 | ISS |
| GO:0006629 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid metabolic process | SoyBase | N/A | ISS |
| GO:0035556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0004629 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phospholipase C activity | SoyBase | N/A | ISS |
| GO:0008081 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphoric diester hydrolase activity | SoyBase | N/A | ISS |
| UniRef100_G7JK30 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: PI-PLC X domain-containing protein n=1 Tax=Medicago truncatula RepID=G7JK30_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JE01 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JE01_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g11450 not represented in the dataset |
Glyma02g11450 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g33710 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g102800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g11450.2 sequence type=transcript gene model=Glyma02g11450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCTTCGGAACCTTAATTATGCTCACATTTATCTCGCAGAATGGAGTACGAGGGTTGATGCTTGACATGTATGATTTCCAGAATGATATTTGGCTGTGCCATTCATTTGGTGGCCAGTGCTACAACTACACAGCTTTTCAACCTGCCATTAATGTTCTCAAAGAGATTCAAGTATTTCTAGACGCAAACCCATCAGAGATTGTTACTATTTTCATTGAGGATTATGTTACATCACCAAAAGGCCTAACAAAGGTGTTTGATGCTGCTGGACTGAGAAAATACTGGTTTCCAGTGTCTAGAATGCCCAAAAATGGTGGAAACTGGCCCACCGTTGATGATATGGTCAAGAAGAATCAACGTTTAGTAGTCTTCACTTCAAAATCATCTAAGGAAGCTTCTGAAGGGATAGCCTATGAGTGGCGATATTTAGTAGAAAACCAATATGGAAATGGAGGCATGAAAGCTGGTTCATGCCCTAATCGTGCAGAGTCACCATCTATGAACACAAAATCAAGATCATTAGTTCTAGTGAATTTCTTTAGAGATCTTCCTGATGTAACTAAATCTTGCAAGGACAACTCAGCTCCTTTGCTTAGCATGGTCAATACATGCTATGAAGCAGCTGACAAACGATGGCCTAATTTCATTGCTGTTGATTTCTACAAGAGGAGCGATGGAGGAGGAGCCCCTGATGCAATAGATGTTGCTAATGGTCATCTAGTTTGTGGGTGTGAAAACTTGGCCTCATGCAAGGCTAATATGACATTTGGAGTGTGTCAGCTACCTGAGGCTGAAGCCACTCCTCCCCTTGCAGCAGCAGCACGTAACACTAGCTTTGGTATTCGAAATTGCAAGCCAGTTTATTTGCTGTGGTCTTTAGCCACCACTGTTTTTGGGGCCTTGCTCGTGGCATTTTGAACAGACATTTCCCTTCATAAAATCTAAGTAGAAGAGAGTAGGAGAAAAGAAAGTGTGTGAAGAAACCATTTTTGGGGGATCACGCTGAATGTGCGTGAACATTTGGTGCAGTGCAATGGTTTTTGTTATTTTATTTTATTTTAATTTTGAAAGAGGAGCTTTGGAAGGTGTAGTTGTAATTTTATAGTCATAGTGGGTATGCAAATGCAATGGGCTCTCTGAACTTAATATTGTTAAGTTATTAGTGTGCATCATGTGGTGAGGGTATGGTATCATTGATTTAACGTGCATTCAAAAGAAAAATATATAAGTGAATTTGGGAGACTGTTTGTTCATGAGTTGCCCATCCAAGTAACAATTATTCTTGCGTATATTTGACATCTATACACCTTGTGTAAGAGAAGCCTTTTATTTTATATACCACT >Glyma02g11450.3 sequence type=transcript gene model=Glyma02g11450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGAATAAAAAAAACAATTCAATGATAACATTGTTTTATTTTTCAGTTTACACCTTTTCACATTGCTCTTAATTTCTCCCTCTAATATTTTTTTTTAAGTATCTCTCTAATATAAAAAGGGTGTACCAGTGGAATTTTTTTTTAACATATATATGTTGATTAGGAGAAGATCATTAGTTAACACCTTGACAGGTAAAGCTGCTATAAAATGGTTCACGTTCAGCTCATACGTCTTGTTCACATGTTGTAGTCTTTGGAATTCAAATTTCGCATTCAATCTTTGTAACTGACAGATAAAGGCGACAATATCTCATCTTTCCTCTCACACCATCAACAAAACCAAATAATGATGATGCAGAAGCCAACACTAGCAACAACCCTTTTCGCCGTTTTGCTCCTTATCCCTTCTTCACTTGCTCTCAAGGAAGGACAAACATGCGTAGCCGACAAGAACTGCGACTCGGGTTTGCATTGCGAAACTTGCGTGGCCAATGGAAACGTGCGACCACGTTGCACTCGGGTTCAACCAATCAACCCCACTTCAAAGATAAAAGGGTTGCCGTTTAATCGGTATTCATGGCTGACGACGCATAATTCATTTGCGATTTTGGGTAAGAAATCAATGACGGGTTCTGTTATTCTGTCTCCAACCAATCAGCAGGACACGATCACAAGCCAGCTTAATCAACCTGCCATTAATGTTCTCAAAGAGATTCAAGTATTTCTAGACGCAAACCCATCAGAGATTGTTACTATTTTCATTGAGGATTATGTTACATCACCAAAAGGCCTAACAAAGGTGTTTGATGCTGCTGGACTGAGAAAATACTGGTTTCCAGTGTCTAGAATGCCCAAAAATGGTGGAAACTGGCCCACCGTTGATGATATGGTCAAGAAGAATCAACGTTTAGTAGTCTTCACTTCAAAATCATCTAAGGAAGCTTCTGAAGGGATAGCCTATGAGTGGCGATATTTAGTAGAAAACCAATATGGAAATGGAGGCATGAAAGCTGGTTCATGCCCTAATCGTGCAGAGTCACCATCTATGAACACAAAATCAAGATCATTAGTTCTAGTGAATTTCTTTAGAGATCTTCCTGATGTAACTAAATCTTGCAAGGACAACTCAGCTCCTTTGCTTAGCATGGTCAATACATGCTATGAAGCAGCTGACAAACGATGGCCTAATTTCATTGCTGTTGATTTCTACAAGAGGAGCGATGGAGGAGGAGCCCCTGATGCAATAGATGTTGCTAATGGTCATCTAGTTTGTGGGTGTGAAAACTTGGCCTCATGCAAGGCTAATATGACATTTGGAGTGTGTCAGCTACCTGAGGCTGAAGCCACTCCTCCCCTTGCAGCAGCAGCACGTAACACTAGCTTTGGTATTCGAAATTGCAAGCCAGTTTATTTGCTGTGGTCTTTAGCCACCACTGTTTTTGGGGCCTTGCTCGTGGCATTTTGAACAGACATTTCCCTTCATAAAATCTAAGTAGAAGAGAGTAGGAGAAAAGAAAGTGTGTGAAGAAACCATTTTTGGGGGATCACGCTGAATGTGCGTGAACATTTGGTGCAGTGCAATGGTTTTTGTTATTTTATTTTATTTTAATTTTGAAAGAGGAGCTTTGGAAGGTGTAGTTGTAATTTTATAGTCATAGTGGGTATGCAAATGCAATGGGCTCTCTGAACTTAATATTGTTAAGTTATTAGTGTGCATCATGTGGTGAGGGTATGGTATCATTGATTTAACGTGCATTCAAAAGAAAAATATATAAGTGAATTTGGGAGACTGTTTGTTCATGAGTTGCCCATCCAAGTAACAATTATTCTTGCGTATATTTGACATCTATACACCTTGTGTAAGAGAAGCCTTTTATTTTATATACCACT
>Glyma02g11450.1 sequence type=CDS gene model=Glyma02g11450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGATGCAGAAGCCAACACTAGCAACAACCCTTTTCGCCGTTTTGCTCCTTATCCCTTCTTCACTTGCTCTCAAGGAAGGACAAACATGCGTAGCCGACAAGAACTGCGACTCGGGTTTGCATTGCGAAACTTGCGTGGCCAATGGAAACGTGCGACCACGTTGCACTCGGGTTCAACCAATCAACCCCACTTCAAAGATAAAAGGGTTGCCGTTTAATCGGTATTCATGGCTGACGACGCATAATTCATTTGCGATTTTGGGTAAGAAATCAATGACGGGTTCTGTTATTCTGTCTCCAACCAATCAGCAGGACACGATCACAAGCCAGCTTAATAATGGAGTACGAGGGTTGATGCTTGACATGTATGATTTCCAGAATGATATTTGGCTGTGCCATTCATTTGGTGGCCAGTGCTACAACTACACAGCTTTTCAACCTGCCATTAATGTTCTCAAAGAGATTCAAGTATTTCTAGACGCAAACCCATCAGAGATTGTTACTATTTTCATTGAGGATTATGTTACATCACCAAAAGGCCTAACAAAGGTGTTTGATGCTGCTGGACTGAGAAAATACTGGTTTCCAGTGTCTAGAATGCCCAAAAATGGTGGAAACTGGCCCACCGTTGATGATATGGTCAAGAAGAATCAACGTTTAGTAGTCTTCACTTCAAAATCATCTAAGGAAGCTTCTGAAGGGATAGCCTATGAGTGGCGATATTTAGTAGAAAACCAATATGGAAATGGAGGCATGAAAGCTGGTTCATGCCCTAATCGTGCAGAGTCACCATCTATGAACACAAAATCAAGATCATTAGTTCTAGTGAATTTCTTTAGAGATCTTCCTGATGTAACTAAATCTTGCAAGGACAACTCAGCTCCTTTGCTTAGCATGGTCAATACATGCTATGAAGCAGCTGACAAACGATGGCCTAATTTCATTGCTGTTGATTTCTACAAGAGGAGCGATGGAGGAGGAGCCCCTGATGCAATAGATGTTGCTAATGGTCATCTAGTTTGTGGGTGTGAAAACTTGGCCTCATGCAAGGCTAATATGACATTTGGAGTGTGTCAGCTACCTGAGGCTGAAGCCACTCCTCCCCTTGCAGCAGCAGCACGTAACACTAGCTTTGGTATTCGAAATTGCAAGCCAGTTTATTTGCTGTGGTCTTTAGCCACCACTGTTTTTGGGGCCTTGCTCGTGGCATTTTGA >Glyma02g11450.2 sequence type=CDS gene model=Glyma02g11450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTCACATTTATCTCGCAGAATGGAGTACGAGGGTTGATGCTTGACATGTATGATTTCCAGAATGATATTTGGCTGTGCCATTCATTTGGTGGCCAGTGCTACAACTACACAGCTTTTCAACCTGCCATTAATGTTCTCAAAGAGATTCAAGTATTTCTAGACGCAAACCCATCAGAGATTGTTACTATTTTCATTGAGGATTATGTTACATCACCAAAAGGCCTAACAAAGGTGTTTGATGCTGCTGGACTGAGAAAATACTGGTTTCCAGTGTCTAGAATGCCCAAAAATGGTGGAAACTGGCCCACCGTTGATGATATGGTCAAGAAGAATCAACGTTTAGTAGTCTTCACTTCAAAATCATCTAAGGAAGCTTCTGAAGGGATAGCCTATGAGTGGCGATATTTAGTAGAAAACCAATATGGAAATGGAGGCATGAAAGCTGGTTCATGCCCTAATCGTGCAGAGTCACCATCTATGAACACAAAATCAAGATCATTAGTTCTAGTGAATTTCTTTAGAGATCTTCCTGATGTAACTAAATCTTGCAAGGACAACTCAGCTCCTTTGCTTAGCATGGTCAATACATGCTATGAAGCAGCTGACAAACGATGGCCTAATTTCATTGCTGTTGATTTCTACAAGAGGAGCGATGGAGGAGGAGCCCCTGATGCAATAGATGTTGCTAATGGTCATCTAGTTTGTGGGTGTGAAAACTTGGCCTCATGCAAGGCTAATATGACATTTGGAGTGTGTCAGCTACCTGAGGCTGAAGCCACTCCTCCCCTTGCAGCAGCAGCACGTAACACTAGCTTTGGTATTCGAAATTGCAAGCCAGTTTATTTGCTGTGGTCTTTAGCCACCACTGTTTTTGGGGCCTTGCTCGTGGCATTTTGA >Glyma02g11450.3 sequence type=CDS gene model=Glyma02g11450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGATGCAGAAGCCAACACTAGCAACAACCCTTTTCGCCGTTTTGCTCCTTATCCCTTCTTCACTTGCTCTCAAGGAAGGACAAACATGCGTAGCCGACAAGAACTGCGACTCGGGTTTGCATTGCGAAACTTGCGTGGCCAATGGAAACGTGCGACCACGTTGCACTCGGGTTCAACCAATCAACCCCACTTCAAAGATAAAAGGGTTGCCGTTTAATCGGTATTCATGGCTGACGACGCATAATTCATTTGCGATTTTGGGTAAGAAATCAATGACGGGTTCTGTTATTCTGTCTCCAACCAATCAGCAGGACACGATCACAAGCCAGCTTAATCAACCTGCCATTAATGTTCTCAAAGAGATTCAAGTATTTCTAGACGCAAACCCATCAGAGATTGTTACTATTTTCATTGAGGATTATGTTACATCACCAAAAGGCCTAACAAAGGTGTTTGATGCTGCTGGACTGAGAAAATACTGGTTTCCAGTGTCTAGAATGCCCAAAAATGGTGGAAACTGGCCCACCGTTGATGATATGGTCAAGAAGAATCAACGTTTAGTAGTCTTCACTTCAAAATCATCTAAGGAAGCTTCTGAAGGGATAGCCTATGAGTGGCGATATTTAGTAGAAAACCAATATGGAAATGGAGGCATGAAAGCTGGTTCATGCCCTAATCGTGCAGAGTCACCATCTATGAACACAAAATCAAGATCATTAGTTCTAGTGAATTTCTTTAGAGATCTTCCTGATGTAACTAAATCTTGCAAGGACAACTCAGCTCCTTTGCTTAGCATGGTCAATACATGCTATGAAGCAGCTGACAAACGATGGCCTAATTTCATTGCTGTTGATTTCTACAAGAGGAGCGATGGAGGAGGAGCCCCTGATGCAATAGATGTTGCTAATGGTCATCTAGTTTGTGGGTGTGAAAACTTGGCCTCATGCAAGGCTAATATGACATTTGGAGTGTGTCAGCTACCTGAGGCTGAAGCCACTCCTCCCCTTGCAGCAGCAGCACGTAACACTAGCTTTGGTATTCGAAATTGCAAGCCAGTTTATTTGCTGTGGTCTTTAGCCACCACTGTTTTTGGGGCCTTGCTCGTGGCATTTTGA
>Glyma02g11450.1 sequence type=predicted peptide gene model=Glyma02g11450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMMQKPTLATTLFAVLLLIPSSLALKEGQTCVADKNCDSGLHCETCVANGNVRPRCTRVQPINPTSKIKGLPFNRYSWLTTHNSFAILGKKSMTGSVILSPTNQQDTITSQLNNGVRGLMLDMYDFQNDIWLCHSFGGQCYNYTAFQPAINVLKEIQVFLDANPSEIVTIFIEDYVTSPKGLTKVFDAAGLRKYWFPVSRMPKNGGNWPTVDDMVKKNQRLVVFTSKSSKEASEGIAYEWRYLVENQYGNGGMKAGSCPNRAESPSMNTKSRSLVLVNFFRDLPDVTKSCKDNSAPLLSMVNTCYEAADKRWPNFIAVDFYKRSDGGGAPDAIDVANGHLVCGCENLASCKANMTFGVCQLPEAEATPPLAAAARNTSFGIRNCKPVYLLWSLATTVFGALLVAF* >Glyma02g11450.2 sequence type=predicted peptide gene model=Glyma02g11450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLTFISQNGVRGLMLDMYDFQNDIWLCHSFGGQCYNYTAFQPAINVLKEIQVFLDANPSEIVTIFIEDYVTSPKGLTKVFDAAGLRKYWFPVSRMPKNGGNWPTVDDMVKKNQRLVVFTSKSSKEASEGIAYEWRYLVENQYGNGGMKAGSCPNRAESPSMNTKSRSLVLVNFFRDLPDVTKSCKDNSAPLLSMVNTCYEAADKRWPNFIAVDFYKRSDGGGAPDAIDVANGHLVCGCENLASCKANMTFGVCQLPEAEATPPLAAAARNTSFGIRNCKPVYLLWSLATTVFGALLVAF* >Glyma02g11450.3 sequence type=predicted peptide gene model=Glyma02g11450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMMQKPTLATTLFAVLLLIPSSLALKEGQTCVADKNCDSGLHCETCVANGNVRPRCTRVQPINPTSKIKGLPFNRYSWLTTHNSFAILGKKSMTGSVILSPTNQQDTITSQLNQPAINVLKEIQVFLDANPSEIVTIFIEDYVTSPKGLTKVFDAAGLRKYWFPVSRMPKNGGNWPTVDDMVKKNQRLVVFTSKSSKEASEGIAYEWRYLVENQYGNGGMKAGSCPNRAESPSMNTKSRSLVLVNFFRDLPDVTKSCKDNSAPLLSMVNTCYEAADKRWPNFIAVDFYKRSDGGGAPDAIDVANGHLVCGCENLASCKANMTFGVCQLPEAEATPPLAAAARNTSFGIRNCKPVYLLWSLATTVFGALLVAF*
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