Glyma02g11420 - SoyBase

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Report for Sequence Feature Glyma02g11420

Feature Type:	gene_model
Chromosome:	Gm02
Start:	9608298
stop:	9611761
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g11420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G15560	AT	Annotation by Michelle Graham. TAIR10: Putative endonuclease or glycosyl hydrolase \| chr2:6788319-6789788 REVERSE LENGTH=489	SoyBase	E_val: 0	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PF01936	PFAM	Protein of unknown function DUF88	JGI		ISS
UniRef100_I1JDZ7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JDZ7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9FNP7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Emb\|CAB71880.1 n=1 Tax=Arabidopsis thaliana RepID=Q9FNP7_ARATH	SoyBase	E_val: 3.00E-27	ISS

Expression Patterns of Glyma02g11420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g11420

Paralog	Evidence	Comments
Glyma07g33680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g11420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g102500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g11420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g11420

Limit To All Plant Sequences

>Glyma02g11420.2   sequence type=CDS   gene model=Glyma02g11420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACCCCAAGTAAATCAACACCAATAATAGCGTCAGACACTTTGGAACAAAAAGGGAAGACTATGACTGAATCAAACGCAAACATTCTTCAATGTCCTTTAAACCAGCAACTCTATAGCTCCTTAGATGGCCCAGTAGCAATCCTTTGGGATATTGAAAATTGTCCAGTTCCATGTGATGTGCGCCCTGAGGATGTAGCAGGTAATATAAGAATGGCTTTACGGGTGCACCCAGTAATTAAAGGAGCTGTTATGATGTTTTCTGCTTATGGGGATTTCAATGCTTTCCCTAGGCGACTTAGAGAGGGCTGTCAGAGAACTGGCGTTAAACTTATTGATGTTCCCAATGGGAGAAAAGATGCTGCTGATAAAGCTATCTTGGTCGACATGTTCTTATTTGCTCTTGACAACCCTCCACCATCCTCTATCATGCTTATATCTGGGGATGTTGATTTTGCACCAGCACTTCACATTCTTGGTCAGCGGGGATATACTGTAATTCTTGTCATCCCTGCTAACGTGGGTGTTTCTTCTGCCCTATGCAATGCTGGTAAATTTGTTTGGGACTGGCCTAGTGTGGTTCGTGGAGAAGGCTTTGTGCCCCCTTCGAAGGCTTTAGTGCCACCACGTGGAGGTCCAGTTGAACTTGCTGGACACTTTATGGGATGCCATATCAATGACAACTCTGATGGACAAAATGAAGAAGAAGCAATAGTTTATAGAGGTATGTCACAGAGCTATTATAACTCAAGGGAATTCTCAATGGTGTCACAATCTCTGTCTGAATACAACAATGGCACATTGAACACGACTTGCTTGCCTACAACTATGAGAACACATAGCCTTCCATCTGTATTGAATGATGTTCCAGGAGGGTCTATGATGCCTTCGAGTGACCTTAATGAATGTCAGTTATGGGTACAGCCTGGGGATTTAAATGGTCTCAAGGGGCAGCTGGTAAGGTTGCTCGAACTTTTTGGAGGATGCCTACCTCTGGCCCGAGTTCCAGCAGAGTACCAGAAACTTTATGGGAGACCTCTTTATGTATCTGAATATGGAGCAATAAAGTTGGTCAATCTTTTCAAGAAGATGGGCGATGCCCTGGCTGTGGAAGGGAAAGGGAATCGGAAATTTGTGTATCTCAGAAACTGGAAGGCAGGCCCAAGTGCTCCTCCTCTCTCTCTGGCAAAGAAAGACAAGAAAGGAAAGGAAGCCCAGGAAGAGAATGTGAATATTGTCACTGGTGGATGCTCTTCAGATGAGTTCTCAGATGAAGAAAGAGTAGTCATCGAAGAGCATGATGAAAGAAGTTGCATAGGGAAGGGGAATCAGGGTAGAGCTGCCAAATGTGAAATTGATGACCGTTTTATTGAGCAATTTAAGTATGAGCTGCAAGAGATTCTGGTAAGCTATTCTTGTCGCATATTCCTAGGTTGTTTTGAGGCTATATACCAGCAGCGTTACAAGAAACAACTGGAATATCAGAGATTTGGTGTGGACAAGTTGGAAGATTTGTTTGAGAAAGTGAGTGATGTGGTGGTACTGCATGAGGAACCAGTAAGCAAGAAGAAGTTCCTGGCTGCTGTAGGTGGTTAG

Predicted protein sequences of Glyma02g11420

Limit To All Plant Sequences

>Glyma02g11420.2   sequence type=predicted peptide   gene model=Glyma02g11420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATPSKSTPIIASDTLEQKGKTMTESNANILQCPLNQQLYSSLDGPVAILWDIENCPVPCDVRPEDVAGNIRMALRVHPVIKGAVMMFSAYGDFNAFPRRLREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTVILVIPANVGVSSALCNAGKFVWDWPSVVRGEGFVPPSKALVPPRGGPVELAGHFMGCHINDNSDGQNEEEAIVYRGMSQSYYNSREFSMVSQSLSEYNNGTLNTTCLPTTMRTHSLPSVLNDVPGGSMMPSSDLNECQLWVQPGDLNGLKGQLVRLLELFGGCLPLARVPAEYQKLYGRPLYVSEYGAIKLVNLFKKMGDALAVEGKGNRKFVYLRNWKAGPSAPPLSLAKKDKKGKEAQEENVNIVTGGCSSDEFSDEERVVIEEHDERSCIGKGNQGRAAKCEIDDRFIEQFKYELQEILVSYSCRIFLGCFEAIYQQRYKKQLEYQRFGVDKLEDLFEKVSDVVVLHEEPVSKKKFLAAVGG*

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