SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G13220 | AT | Annotation by Michelle Graham. TAIR10: nuclear matrix constituent protein-related | chr1:4515699-4520071 FORWARD LENGTH=1128 | SoyBase | E_val: 0 | ISS |
| GO:0006342 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing | SoyBase | N/A | ISS |
| GO:0006997 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleus organization | SoyBase | N/A | ISS |
| GO:0007267 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell-cell signaling | SoyBase | N/A | ISS |
| GO:0009616 | GO-bp | Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing | SoyBase | N/A | ISS |
| GO:0010050 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative phase change | SoyBase | N/A | ISS |
| GO:0010267 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference | SoyBase | N/A | ISS |
| GO:0016572 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone phosphorylation | SoyBase | N/A | ISS |
| GO:0035196 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA | SoyBase | N/A | ISS |
| GO:0051567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005654 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleoplasm | SoyBase | N/A | ISS |
| KOG0978 | KOG | E3 ubiquitin ligase involved in syntaxin degradation | JGI | ISS | |
| UniRef100_B9SEG9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SEG9_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JDZ1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JDZ1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g11335 not represented in the dataset |
Glyma02g11335 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g22710 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g101800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g11335.1 sequence type=CDS gene model=Glyma02g11335 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTCACGCCGCAGAGAAAGGCGTGGCCGGCCGCGGCGGCGTTCACTCCCCTTCGGGGCGGTTCCGCCTCCGCGAAGGGCAAGGCCGTCGCCGAGGGTCCTCCGCCGCCGCCGTTGGGGTCTCTGACGGAAACCACCGTTGCGGTGGGGCTTGACGCCGCGGGGGACGCCGAGGACTGGAAACGGTTCACCAAGTTAGGGTTGCTGGACGAGGCTGTGATGCAGCGGAAGGACCACGAAGCGCTCGTGGAGAAGGTTTCTAGGCTCGAAAGAGAGCTTTTTGACTACCAATACAACATGGGCCTCCTATTGATTGAGAAGAAAGAATGGAATTCAAAGTTTGATCAGCTGAGGCAAGAACTAGCTGAAACTGAAGAGATTCTAAAACGAGAACAGTCAGCACATTTAATTGCATTATTTGAAGTTGAGAAGCGAGAGGAAAATTTGAAGAAAGCATTAAGCACAGAGAGGCAATGTGGGGCTGATCTTGAGAGAGCTCTGCGTGCAATGCAAGAAGAGCATGCCCAAGTCAAGTCTTCCTCTCATACAAAGCTAGCTAAAGCTAACGCATTGGTTGATGGAATTGAAGAGAAGTCTTCGGTGGTTGACAAGAAACTGCTTGATGCAGAAGCTAAGCTTGCTGAGATAAACAGAAAAAATGCAGAGCTGGATATGAAATTGCGACAGGTGGATGTTCGTGAAAGTTTGCTTCAAAAGGAGCGTTTGTCTTTAGCTACTGATCGAGAATCATTTGAGGCAACATTCTACAAACAAAGGGAAGATTTGAAGGACTGGGAAAGGAAGCTAAAGCAAAGAGAAGATATGCTATGTGATGGTAGGCAAAATCTTGGTGAGAAAGAAGAAAAGATAGTTGAAACTGAGAAGAACCTTAAGCAGAAAGAAAGAGACCTTGAAGTGTTGGAGAAGAAAATTGATTCATCTAATTCTTTAGTGAAAGAAAAGGAAGCTGAGATAATCCAAAGAGTAGCAGATTTAGATGTGGAAGAGAAGAAAGTGAATTCTTTAAAGAGCATGCTGGAGATGAAAGAGAAAGAATTGCTTGCACTGGAACTAAAGCTTAGTGCTAGAGAAAGAGAGGGGATCGAGAAGCTCCTTGGTGAACAAAAGGCTACTCTGGATTTAAAGTTGCAGCAGGTTGAACTTGAAATGGAACAAAAGCAGAAATCCCTCGTTGAGGAGTTTAGCAGCAAGGAGGAAGCCTTGGAGCAGAGGGAGGTCGAAGTCAACCATAGGGAAAAAAAGGTTGGAAAAGAAGAGCAGGCCTTGAATAAGAAGGCTGAGAGAATAAAGGAGCAAAATAAGGAGATTGAAGCAAAGTTGAAATCCTTAAAGGAGAAAGAAAAGACTATGATAATTAAAGAGAAAGAGTTGGAGAAGGAAAAACAACAACTGCTTGCTGACCGGGAGAGCCTGGAGAATTTAAATGCTGAACTTGAGAAGATGAAAGCTGAGATTTCTCAGAAGGAGTTGCAAATATGCCAAGAGACTGAGAATTTGAAGCTTACTGAAGATGATAGGGCAGAGCATTCTCGTTTGCAATTGGAACTAAAACAGGAGATAGAGCATACCAGATTGCAGAAGGACTTTATTATGAAGGAAGCTGAAAACTTAAGGGAGGAGAGACAGAGGTTTGAGAAAGAGTGGGAAGTGCTGGATGAAAAAAGAGCAGAAATTACTAATAAGCAGCATGGTATTGATATGGAGAAAGAAAGTTTAAGAAAATTTCAGAACAGTGAAGAAGAAAGGTTGAAAAGTGAGAAACAACATATGCAAGATCATATAAAGAAAGAACTGGAGATGCTTGAATCGGAGAAGGAATCATTTAGAGATTCAATGAAGCAAGAGAAACATCTTTTGTCTGAAAAGGTGAAAAATGAAAAGGCACAAATGCTTCAAGATTTTGAATTGAAGATGAGGAATCTTGAGAATGAAATCCAGAAAAGACAGGAGGAAATGGAGAAAGACTTGCAGGAAAGGGAGAGAAACTTTCAGGAGGAGATGCAAAGAGAGCTTGATAATATTAATAACTTGAAGGATGTTACTGAGAAGGAATGGGAAGAAGTGAAGGCTGAGGGGATTAGGTTAGAAAATGAGAGGAAGGTACTTGAGTCGAACAAGCAGCAACTGAAGTCAGGCCAACATGAGATGCATGAAGATTCTGAAATGCTTATGAATCTCAGCCGGAAGGTTAAGAAGGAACGTGAGCGCCTTGTTGCTGAAAGAAAACATTTTCTTGAACTTGTTGAGAAGCTAAGGAGTTGCAAGGGCTGTGGTGAAGTTGTTAGGGATTTTGTTGTATCTGATATTCAGTTACCTGACTTTAAGGAAAGAGTGGCCATTCCCTCACCTATCTCCCCTGTTCTGAATGACAATCCTCCTAAGAACTCCCAGGACAATATAGCTGCTTCTGAGTTTAACATCTCTGGATCTGTAAAGCCTGTGTCTTGGCTCCGTAAATGCACAACCAAGATTTTCAATCTGTCCCCAAGTAAAAGAGCTGATGCTGTTGGTGCTTTAGACATGCCTGGGACATCACCACTGTCAGATGTCAATTTTAGTGTAGAGAACATAGATGAGGAGCTGCCTACATCTCTTCCTAATATAGGAGCTAGAGTTATTTTTGACGAACGTCAACCAGCAGGTGGGATGGCACATCACTCTTCAGATACACCACACCTCCAATCTGATAACATTGGTAAAGAGGTTGGTGATGAATACTCTCTATCCGTGGGTGATCACAGCCGCGTGGATAGTTTTGTAGATGGAGATCCAGGTGATTCGCAGCAGTCTGTTCCAAAGCTTGGTCGGCGCAAACCTGGGAGGAAAAGCAAATCTGGAATTGCTAGAACACGCTCAGTGAAGGCTGTTGTTGAAGAGGCCAAGGAGTTCCTAGGAAAAGCCCCAAAGAAAATAGAAAATGCAAGCTTGCAGTCTCTCAATACTGATCATATCAGAGAAGACAGTCGAGAAGACTCCAGTCACACTGAGAAAGCCATTGGTAACACTAGAAGGAAACGGCAACGGGCACAAACTTCTAGGATTACAGAAAGTGAGCAGAATGCTGGTGATAGTGAAGGACAATCAGATAGTATTACAGCTGGTGGGCGCAGGAAGAAGAGGCAAACAGTTGCTCCACTGACGCAAGTTACTGGGGAGAAGCGATACAATCTCAGGCGGCATAAGATTGCAGGCAAAGATTCATCAACACAGAACATATCAAATGCAACAAAGAGTGTGGAGAAAGAAGCTGCTGCTGGTAAACTGGAGGGTGATAAAAACACCCCTGAAGTTGTTGAAACTTCATTAGCAGTAGATGATGACAATGTACAAGACACAAACCTGGTGCAGGTCTCGACAGTAAAGACTGTGGAGTTCTCAGATCATAGAGCTGTTAGGTTTGAACTACCAAAAGATGTTGTTGATGACAATGCTGCTGCAACTGAGACTCTGAATCGTGTGGAGGAAAATGGTACACCAGAATATCAAGATGAAGATGGAAGCACAATCCATGAAGTTGAAAATGATGATGATGATGAGGAGGAGGAGGAAGAGGAGGAACATCCGGGTGAGGTGTCCATTGGAAAGAAGATCTTCAGATTTTTTACAACGTGA
>Glyma02g11335.1 sequence type=predicted peptide gene model=Glyma02g11335 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFTPQRKAWPAAAAFTPLRGGSASAKGKAVAEGPPPPPLGSLTETTVAVGLDAAGDAEDWKRFTKLGLLDEAVMQRKDHEALVEKVSRLERELFDYQYNMGLLLIEKKEWNSKFDQLRQELAETEEILKREQSAHLIALFEVEKREENLKKALSTERQCGADLERALRAMQEEHAQVKSSSHTKLAKANALVDGIEEKSSVVDKKLLDAEAKLAEINRKNAELDMKLRQVDVRESLLQKERLSLATDRESFEATFYKQREDLKDWERKLKQREDMLCDGRQNLGEKEEKIVETEKNLKQKERDLEVLEKKIDSSNSLVKEKEAEIIQRVADLDVEEKKVNSLKSMLEMKEKELLALELKLSAREREGIEKLLGEQKATLDLKLQQVELEMEQKQKSLVEEFSSKEEALEQREVEVNHREKKVGKEEQALNKKAERIKEQNKEIEAKLKSLKEKEKTMIIKEKELEKEKQQLLADRESLENLNAELEKMKAEISQKELQICQETENLKLTEDDRAEHSRLQLELKQEIEHTRLQKDFIMKEAENLREERQRFEKEWEVLDEKRAEITNKQHGIDMEKESLRKFQNSEEERLKSEKQHMQDHIKKELEMLESEKESFRDSMKQEKHLLSEKVKNEKAQMLQDFELKMRNLENEIQKRQEEMEKDLQERERNFQEEMQRELDNINNLKDVTEKEWEEVKAEGIRLENERKVLESNKQQLKSGQHEMHEDSEMLMNLSRKVKKERERLVAERKHFLELVEKLRSCKGCGEVVRDFVVSDIQLPDFKERVAIPSPISPVLNDNPPKNSQDNIAASEFNISGSVKPVSWLRKCTTKIFNLSPSKRADAVGALDMPGTSPLSDVNFSVENIDEELPTSLPNIGARVIFDERQPAGGMAHHSSDTPHLQSDNIGKEVGDEYSLSVGDHSRVDSFVDGDPGDSQQSVPKLGRRKPGRKSKSGIARTRSVKAVVEEAKEFLGKAPKKIENASLQSLNTDHIREDSREDSSHTEKAIGNTRRKRQRAQTSRITESEQNAGDSEGQSDSITAGGRRKKRQTVAPLTQVTGEKRYNLRRHKIAGKDSSTQNISNATKSVEKEAAAGKLEGDKNTPEVVETSLAVDDDNVQDTNLVQVSTVKTVEFSDHRAVRFELPKDVVDDNAAATETLNRVEENGTPEYQDEDGSTIHEVENDDDDEEEEEEEEHPGEVSIGKKIFRFFTT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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