SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G26110 | AT | Annotation by Michelle Graham. TAIR10: decapping 5 | chr1:9024616-9027556 REVERSE LENGTH=611 | SoyBase | E_val: 3.00E-179 | ISS |
| GO:0006486 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein glycosylation | SoyBase | N/A | ISS |
| GO:0006487 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation | SoyBase | N/A | ISS |
| GO:0010606 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of cytoplasmic mRNA processing body assembly | SoyBase | N/A | ISS |
| GO:0017148 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of translation | SoyBase | N/A | ISS |
| GO:0031087 | GO-bp | Annotation by Michelle Graham. GO Biological Process: deadenylation-independent decapping of nuclear-transcribed mRNA | SoyBase | N/A | ISS |
| GO:0033962 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytoplasmic mRNA processing body assembly | SoyBase | N/A | ISS |
| GO:0000932 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasmic mRNA processing body | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0042803 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity | SoyBase | N/A | ISS |
| KOG1073 | KOG | Uncharacterized mRNA-associated protein RAP55 | JGI | ISS | |
| PTHR13586 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF09532 | PFAM | DFDF motif | JGI | ISS | |
| PF09542 | PFAM | FFD and TFG box motifs | JGI | ISS | |
| UniRef100_G7I4Y0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: LSM14-like protein n=1 Tax=Medicago truncatula RepID=G7I4Y0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002337641 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337641 related cluster n=1 Tax=unknown RepID=UPI0002337641 | SoyBase | E_val: 0 | ISS |
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Glyma02g11300 not represented in the dataset |
Glyma02g11300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g22680 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g101500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g11300.2 sequence type=transcript gene model=Glyma02g11300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CACATCCCATCACTCCAATTGAAACCTTAAACCTGAAACCTGAAACCGAATAGATTTAGTGGCCTTGGGAATTTATTTTAAAAGGTACGATCAAAGAATGAAACTCATACCCTAATAGTACATAATAATCTCTCATTTACATCCCGTCACTCCAGTTGAAAGAAACTCGAAACCGATTAGATTAGAGGCTTCAAACAAGAGGCCCCAAAACCCAAACCCTATTCTGGTTCACTTGCGATTATGGCGTCTGAGAGCGCTTCTCGATCGAGTTCCGCGGCCGATTCGTACATTGGGAGCTTGATAAGCTTGACCTCTAAGAGTGAGATCAGATACGAAGGCATACTCTACAACATCAACACCGAAGAGTCCAGTATTGGCCTCAGAAACGTGCGATCTTTTGGAACAGAAGGAAGGAAAAAGGATGGCCCACAAATCCCTCCAGGTGACAAGGTTTATGAGTATATACTTTTCCGTGGGACTGACATCAAGGATTTACAGGTTAAATCTTCTCCACCTGTCCAGCCTACTCCACAAGTCAACAATGACCCAGCTATTATTCAGTCTCACTATCCTTACCCGGTGACCACATCTACAAGTTTGCCTTCTGCTGTAAGTGGGTCTTTGACTGATCCTAGCTCTCATACCACACAGCTTGGACTTCCTGGGTCAAATTTTCTGGGGCCCTTGCCTTTGTATCAACCTGGAGGGAACATAGGATCGTGGGGAGCTTCTCCACCTGCTCCTAATGCAAATGGTGGTAGGCTTGCTATGCCACCAATGTATTGGCAAGGGTATTATGGTGCCCCAAACGGGCTTCCTCAATTACAACAACAATCTTTGCTTCAGCCGCCACCTGGTTTATCAATGCCTTCATCGATGCAGCACCCAATGCAGTATCCCAATTTTACCCCTCCTTTACCTACTGTATCTTCTAATTTGCCTGAATTACCATCATCTTTGCTGCCTGTGAGTGCTGGTACCCCTAGTATACCATCTGCTTCCTTGCCTCCATCTAATTTGCCTCCAGCACCTTCTGCTTTACCTCCTGCTCCATCAGCTTTGCCTCCTGCACCGTCTGCTCTATCTCCTGCATCTTCTGCTTTATCTCCCGTACCTTCTGCAACACTTGCTTCTGAAAATTTGCCAGTATCAGTAACAAATAAGGCACCCAATGTTTCAACTTCAGCAGCTATGTTAGCTGCTAACTTGCCATCACTGACCATTTCTGGTCCAGATATAAATGCTATAGTGCCACCCATCTCCAGCAAACCGCATGCAATTTCAGGTTCAAGCTTGCCCTATCAAACTGTATCCCAGTTTTCTCCTGCAGTTGTGGGATCATCAACTTCTATCCATACAGAAACATCAGCACCTTCTCTCCTAACCCCAGGTCAATTATTGCAGCCTGGACCAAGTATAGTTTCTTCAGCTCAGCCTTCACAAGCACCTCATAAGGATGTTGAAGTGGTTCAGGTATCGTCAACATCATCTCCTGAGCCATCTGTGCCAGTTTCTGCTGAAACTCAACCACCAATACTGCCATTGCCAGTAACTTCACGGCCCAGTTACAGACCCGGTGTAGCTCCTATCCAAATTCATCATGGCTATAATTATAGAGGACGTGGAAGAGGAAGGGGAACTGGGGGTTTGCACCCAGTCACAAAATTCACTGAGGATTTTGATTTCACAGCAATGAATGAGAAGTTCAAAAAGGATGAAGTATGGGGTCATCTTGGTAAAAGTAAGTCTCATTCAAAAGAAAAAGATGGGGAAGAAAATGCCTTTGATGAAGATTACCAAGATGAAGACAATGACGATGTATCAAACTTTGAGGTTAAGCCTATTTACAACAAGGATGACTTCTTTGATTCGCTCTCATCCAACGTGCATGGTAATACTTCACAGAATGGAAGGACCAGATACTCTGAACAAATCAAGATTGATACTGAGGTAATTCCTATCTTTCGTAGATCTCATATTTGGGGGACAATGTTCAATTCTTTTGCTGATTTGTGGTACAGACGTTTGGTGATTTTGTGAGGCACCGTGGTGGTCGTGGGGGCCGTGGCCCTGGCCGTGGTGGACGTACCCGAGGTGGTTATTATGGAAGAGGAGGAGGGTACGGCTATAATGGACGAGGGAGGGGACGTGGCATGCCCAGTCGCACTTTGTAGGTGGCAGTTAATGTTTAGTCATGGACATGGTGGAGAACAAGAGCCTAGGTAGCCTCCCCTAAAAGCATCGTAACTATGTTAGAGATAATGCTTCATTGTTGTGTTGCCTGTTATATGTTTTGCTTCGCAGAATAAGTAGGACACTTTTTTCCTGTTATGCTACCCTCTTGTTACTCCTCTACCAAAGTCACTTGGTTTGGTGTAAAGATGTTTGTACACCATTTTATATCAGCATATATCACCAGGCAGAAGTTTAGACTAATTTATTGCCGGATTTTTTTTATGCATGTTAGCTACTAGTTGCTCATTCATTTCTGTTATTCATTTGTGCTGGGGTGGGAAATGATTGATATTCCTCCAATTATATATTTATTTTTAGGTTTAAATGTAATTTTGGTCTTTCTATTTTTTTCAATCTATAATTTTGGTCCCTTCATTTTAAAATTGAGACATTTGGTCA
>Glyma02g11300.1 sequence type=CDS gene model=Glyma02g11300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGTCTGAGAGCGCTTCTCGATCGAGTTCCGCGGCCGATTCGTACATTGGGAGCTTGATAAGCTTGACCTCTAAGAGTGAGATCAGATACGAAGGCATACTCTACAACATCAACACCGAAGAGTCCAGTATTGGCCTCAGAAACGTGCGATCTTTTGGAACAGAAGGAAGGAAAAAGGATGGCCCACAAATCCCTCCAGGTGACAAGGTTTATGAGTATATACTTTTCCGTGGGACTGACATCAAGGATTTACAGGTTAAATCTTCTCCACCTGTCCAGCCTACTCCACAAGTCAACAATGACCCAGCTATTATTCAGTCTCACTATCCTTACCCGGTGACCACATCTACAAGTTTGCCTTCTGCTGTAAGTGGGTCTTTGACTGATCCTAGCTCTCATACCACACAGCTTGGACTTCCTGGGTCAAATTTTCTGGGGCCCTTGCCTTTGTATCAACCTGGAGGGAACATAGGATCGTGGGGAGCTTCTCCACCTGCTCCTAATGCAAATGGTGGTAGGCTTGCTATGCCACCAATGTATTGGCAAGGGTATTATGGTGCCCCAAACGGGCTTCCTCAATTACAACAACAATCTTTGCTTCAGCCGCCACCTGGTTTATCAATGCCTTCATCGATGCAGCACCCAATGCAGTATCCCAATTTTACCCCTCCTTTACCTACTGTATCTTCTAATTTGCCTGAATTACCATCATCTTTGCTGCCTGTGAGTGCTGGTACCCCTAGTATACCATCTGCTTCCTTGCCTCCATCTAATTTGCCTCCAGCACCTTCTGCTTTACCTCCTGCTCCATCAGCTTTGCCTCCTGCACCGTCTGCTCTATCTCCTGCATCTTCTGCTTTATCTCCCGTACCTTCTGCAACACTTGCTTCTGAAAATTTGCCAGTATCAGTAACAAATAAGGCACCCAATGTTTCAACTTCAGCAGCTATGTTAGCTGCTAACTTGCCATCACTGACCATTTCTGGTCCAGATATAAATGCTATAGTGCCACCCATCTCCAGCAAACCGCATGCAATTTCAGGTTCAAGCTTGCCCTATCAAACTGTATCCCAGTTTTCTCCTGCAGTTGTGGGATCATCAACTTCTATCCATACAGAAACATCAGCACCTTCTCTCCTAACCCCAGGTCAATTATTGCAGCCTGGACCAAGTATAGTTTCTTCAGCTCAGCCTTCACAAGCACCTCATAAGGATGTTGAAGTGGTTCAGGTATCGTCAACATCATCTCCTGAGCCATCTGTGCCAGTTTCTGCTGAAACTCAACCACCAATACTGCCATTGCCAGTAACTTCACGGCCCAGTTACAGACCCGGTGTAGCTCCTATCCAAATTCATCATGGCTATAATTATAGAGGACGTGGAAGAGGAAGGGGAACTGGGGGTTTGCACCCAGTCACAAAATTCACTGAGGATTTTGATTTCACAGCAATGAATGAGAAGTTCAAAAAGGATGAAGTATGGGGTCATCTTGGTAAAAGTAAGTCTCATTCAAAAGAAAAAGATGGGGAAGAAAATGCCTTTGATGAAGATTACCAAGATGAAGACAATGACGATGTATCAAACTTTGAGGTTAAGCCTATTTACAACAAGGATGACTTCTTTGATTCGCTCTCATCCAACGTGCATGGTAATACTTCACAGAATGGAAGGACCAGATACTCTGAACAAATCAAGATTGATACTGAGACGTTTGGTGATTTTGTGAGGCACCGTGGTGGTCGTGGGGGCCGTGGCCCTGGCCGTGGTGGACGTACCCGAGGTGGTTATTATGGAAGAGGAGGAGGGTACGGCTATAATGGACGAGGGAGGGGACGTGGCATGCCCAGTCGCACTTTGTAG >Glyma02g11300.2 sequence type=CDS gene model=Glyma02g11300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGTCTGAGAGCGCTTCTCGATCGAGTTCCGCGGCCGATTCGTACATTGGGAGCTTGATAAGCTTGACCTCTAAGAGTGAGATCAGATACGAAGGCATACTCTACAACATCAACACCGAAGAGTCCAGTATTGGCCTCAGAAACGTGCGATCTTTTGGAACAGAAGGAAGGAAAAAGGATGGCCCACAAATCCCTCCAGGTGACAAGGTTTATGAGTATATACTTTTCCGTGGGACTGACATCAAGGATTTACAGGTTAAATCTTCTCCACCTGTCCAGCCTACTCCACAAGTCAACAATGACCCAGCTATTATTCAGTCTCACTATCCTTACCCGGTGACCACATCTACAAGTTTGCCTTCTGCTGTAAGTGGGTCTTTGACTGATCCTAGCTCTCATACCACACAGCTTGGACTTCCTGGGTCAAATTTTCTGGGGCCCTTGCCTTTGTATCAACCTGGAGGGAACATAGGATCGTGGGGAGCTTCTCCACCTGCTCCTAATGCAAATGGTGGTAGGCTTGCTATGCCACCAATGTATTGGCAAGGGTATTATGGTGCCCCAAACGGGCTTCCTCAATTACAACAACAATCTTTGCTTCAGCCGCCACCTGGTTTATCAATGCCTTCATCGATGCAGCACCCAATGCAGTATCCCAATTTTACCCCTCCTTTACCTACTGTATCTTCTAATTTGCCTGAATTACCATCATCTTTGCTGCCTGTGAGTGCTGGTACCCCTAGTATACCATCTGCTTCCTTGCCTCCATCTAATTTGCCTCCAGCACCTTCTGCTTTACCTCCTGCTCCATCAGCTTTGCCTCCTGCACCGTCTGCTCTATCTCCTGCATCTTCTGCTTTATCTCCCGTACCTTCTGCAACACTTGCTTCTGAAAATTTGCCAGTATCAGTAACAAATAAGGCACCCAATGTTTCAACTTCAGCAGCTATGTTAGCTGCTAACTTGCCATCACTGACCATTTCTGGTCCAGATATAAATGCTATAGTGCCACCCATCTCCAGCAAACCGCATGCAATTTCAGGTTCAAGCTTGCCCTATCAAACTGTATCCCAGTTTTCTCCTGCAGTTGTGGGATCATCAACTTCTATCCATACAGAAACATCAGCACCTTCTCTCCTAACCCCAGGTCAATTATTGCAGCCTGGACCAAGTATAGTTTCTTCAGCTCAGCCTTCACAAGCACCTCATAAGGATGTTGAAGTGGTTCAGGTATCGTCAACATCATCTCCTGAGCCATCTGTGCCAGTTTCTGCTGAAACTCAACCACCAATACTGCCATTGCCAGTAACTTCACGGCCCAGTTACAGACCCGGTGTAGCTCCTATCCAAATTCATCATGGCTATAATTATAGAGGACGTGGAAGAGGAAGGGGAACTGGGGGTTTGCACCCAGTCACAAAATTCACTGAGGATTTTGATTTCACAGCAATGAATGAGAAGTTCAAAAAGGATGAAGTATGGGGTCATCTTGGTAAAAGTAAGTCTCATTCAAAAGAAAAAGATGGGGAAGAAAATGCCTTTGATGAAGATTACCAAGATGAAGACAATGACGATGTATCAAACTTTGAGGTTAAGCCTATTTACAACAAGGATGACTTCTTTGATTCGCTCTCATCCAACGTGCATGGTAATACTTCACAGAATGGAAGGACCAGATACTCTGAACAAATCAAGATTGATACTGAGGTAATTCCTATCTTTCGTAGATCTCATATTTGGGGGACAATGTTCAATTCTTTTGCTGATTTGTGGTACAGACGTTTGGTGATTTTGTGA
>Glyma02g11300.1 sequence type=predicted peptide gene model=Glyma02g11300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASESASRSSSAADSYIGSLISLTSKSEIRYEGILYNINTEESSIGLRNVRSFGTEGRKKDGPQIPPGDKVYEYILFRGTDIKDLQVKSSPPVQPTPQVNNDPAIIQSHYPYPVTTSTSLPSAVSGSLTDPSSHTTQLGLPGSNFLGPLPLYQPGGNIGSWGASPPAPNANGGRLAMPPMYWQGYYGAPNGLPQLQQQSLLQPPPGLSMPSSMQHPMQYPNFTPPLPTVSSNLPELPSSLLPVSAGTPSIPSASLPPSNLPPAPSALPPAPSALPPAPSALSPASSALSPVPSATLASENLPVSVTNKAPNVSTSAAMLAANLPSLTISGPDINAIVPPISSKPHAISGSSLPYQTVSQFSPAVVGSSTSIHTETSAPSLLTPGQLLQPGPSIVSSAQPSQAPHKDVEVVQVSSTSSPEPSVPVSAETQPPILPLPVTSRPSYRPGVAPIQIHHGYNYRGRGRGRGTGGLHPVTKFTEDFDFTAMNEKFKKDEVWGHLGKSKSHSKEKDGEENAFDEDYQDEDNDDVSNFEVKPIYNKDDFFDSLSSNVHGNTSQNGRTRYSEQIKIDTETFGDFVRHRGGRGGRGPGRGGRTRGGYYGRGGGYGYNGRGRGRGMPSRTL* >Glyma02g11300.2 sequence type=predicted peptide gene model=Glyma02g11300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASESASRSSSAADSYIGSLISLTSKSEIRYEGILYNINTEESSIGLRNVRSFGTEGRKKDGPQIPPGDKVYEYILFRGTDIKDLQVKSSPPVQPTPQVNNDPAIIQSHYPYPVTTSTSLPSAVSGSLTDPSSHTTQLGLPGSNFLGPLPLYQPGGNIGSWGASPPAPNANGGRLAMPPMYWQGYYGAPNGLPQLQQQSLLQPPPGLSMPSSMQHPMQYPNFTPPLPTVSSNLPELPSSLLPVSAGTPSIPSASLPPSNLPPAPSALPPAPSALPPAPSALSPASSALSPVPSATLASENLPVSVTNKAPNVSTSAAMLAANLPSLTISGPDINAIVPPISSKPHAISGSSLPYQTVSQFSPAVVGSSTSIHTETSAPSLLTPGQLLQPGPSIVSSAQPSQAPHKDVEVVQVSSTSSPEPSVPVSAETQPPILPLPVTSRPSYRPGVAPIQIHHGYNYRGRGRGRGTGGLHPVTKFTEDFDFTAMNEKFKKDEVWGHLGKSKSHSKEKDGEENAFDEDYQDEDNDDVSNFEVKPIYNKDDFFDSLSSNVHGNTSQNGRTRYSEQIKIDTEVIPIFRRSHIWGTMFNSFADLWYRRLVIL*
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