SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G04560 | AT | Annotation by Michelle Graham. TAIR10: transferases, transferring glycosyl groups | chr2:1590341-1592667 REVERSE LENGTH=460 | SoyBase | E_val: 0 | ISS |
| GO:0009245 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid A biosynthetic process | SoyBase | N/A | ISS |
| GO:0019243 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate | SoyBase | N/A | ISS |
| GO:2001289 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid X metabolic process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0008915 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: lipid-A-disaccharide synthase activity | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| PF02684 | PFAM | Lipid-A-disaccharide synthetase | JGI | ISS | |
| UniRef100_B9SSI8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Lipid-A-disaccharide synthase, putative n=1 Tax=Ricinus communis RepID=B9SSI8_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JDX6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JDX6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g11180 not represented in the dataset |
Glyma02g11180 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g100600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g11180.1 sequence type=CDS gene model=Glyma02g11180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTCTCAAAGTGGATCCCTCCAATTTCGTTGGGAGCAAAATCTTTACTGAGAAGGAAATGCAACCTAAACCCAAACCCGAACATCCCGAGAGTGCAATGGTTCTCAGTTTCATCGTCGAAAGCAGCTCCGATGATAGAGATGGCTGCAAGAGATGGGGAACTGAGGGTCTTCCTTGTTGCCGGTGAGGTTTCTGGAGATTCCATCGCTTCTCGCCTCATGGCTTCGCTTAAGATTCTCTCTCCTTTACCTATTCGCTTCGCTGGTGTTGGAGGGGTTAAGATGACAAGTGAAGGATTGCAGTCTTTGTTTCCCATTGAGGATATTTCTGTAATGGGACTTTGGGAGCTATTGCCACATTTGTATAGAATCAGAGTGAAACTGAATGAAACTGTCAAAGCTGCTGCTCTATTTGAACCTCATGTTGTATTAACTATTGATTCTAAGGGCTTTTCATTTCGGTTCTTGAAACAGCTTAGAGCTAGATATAGACAAAAGAAGTTGCATTCGCCAGCACACTTTCACTATGTAGCTCCATCATTCTGGGCATGGAAAGGAGGTGAAACAAGACTCAGAGGACTAGCGGAATTTGTGGATCATTTATTGTGCATACTTCCAAATGAGGACAAAATCTGTAGATTAAATGGATTGTGTGCAACATTTGTTGGGCATCCAGTCCTGGAAGATGTTCTGGAATTGAATTTGAGAAACAATTCCTCGATTCATGAATGGAAGGCTGAAGGAAATGGTGAAGACTTCCGAATTAAGCATGCAGTGCCAGCAGGAGCCACTATCATTAGCTTGCTTCCTGGAAGCAGAATGCAAGAAGTCAGTCGGATGCTTCCGATCTTTTCAAACACAGTGGAACTGATGAAAGACATGGTTCCACAGTTGATGACAATCATTCATGTTGCACCTAATGAGCATGTGGAAAATTTCATAGCTGATGCTGTTCACAGATGGCCTGTGCCAGTTGTATTGATACCAGGTGGAACAACACAACTGAGATATGATGCTTTTAGTGCAAGTAGAGCTGCGTTATGCACATCTGGGACAGTTGCTGTGGAGCTGCAGCTTGCACGATTACCCTGTGTTGTGGCATATCGTGCCCATATTTTGACAGAATGGTATATTTGGTACAAAGCGAAGATACAGTATATATCACTTACCAATATTCTTTTGGACAAAGCCATTATTCCTGAAGCACTCTTTCAATCTTGCAAACCACTTAACTTAGCCTTGTTGCTCAAAGATTTATTACATGATGATGGTTGTCGAGAAGAACAAATAATTGCAGCCCAAAAGATTCTCAAGCTTCTATGGCCTTCAGAGAGAATAAAGCTCAACCTTCTACAACAAAATTTGAAAACTTGTGCTGATTACACTCCAAGTGCAGTTGCAGCATTGACTATATTAAACCATGGGAAGCCAATGACTAGTATCTAA
>Glyma02g11180.1 sequence type=predicted peptide gene model=Glyma02g11180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLSKWIPPISLGAKSLLRRKCNLNPNPNIPRVQWFSVSSSKAAPMIEMAARDGELRVFLVAGEVSGDSIASRLMASLKILSPLPIRFAGVGGVKMTSEGLQSLFPIEDISVMGLWELLPHLYRIRVKLNETVKAAALFEPHVVLTIDSKGFSFRFLKQLRARYRQKKLHSPAHFHYVAPSFWAWKGGETRLRGLAEFVDHLLCILPNEDKICRLNGLCATFVGHPVLEDVLELNLRNNSSIHEWKAEGNGEDFRIKHAVPAGATIISLLPGSRMQEVSRMLPIFSNTVELMKDMVPQLMTIIHVAPNEHVENFIADAVHRWPVPVVLIPGGTTQLRYDAFSASRAALCTSGTVAVELQLARLPCVVAYRAHILTEWYIWYKAKIQYISLTNILLDKAIIPEALFQSCKPLNLALLLKDLLHDDGCREEQIIAAQKILKLLWPSERIKLNLLQQNLKTCADYTPSAVAALTILNHGKPMTSI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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