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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G25570 | AT | Annotation by Michelle Graham. TAIR10: Di-glucose binding protein with Leucine-rich repeat domain | chr1:8992183-8995430 REVERSE LENGTH=628 | SoyBase | E_val: 0 | ISS |
| GO:0005768 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endosome | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005802 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| PTHR24420 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PF00560 | PFAM | Leucine Rich Repeat | JGI | ISS | |
| PF11721 | PFAM | Di-glucose binding within endoplasmic reticulum | JGI | ISS | |
| UniRef100_G7JX54 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Receptor-like protein kinase n=1 Tax=Medicago truncatula RepID=G7JX54_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_G7JX54 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Receptor-like protein kinase n=1 Tax=Medicago truncatula RepID=G7JX54_MEDTR | SoyBase | E_val: 0 | ISS |
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Glyma02g11090 not represented in the dataset |
Glyma02g11090 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g22406 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g099800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g11090.2 sequence type=transcript gene model=Glyma02g11090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGAGCCAAACCTCACCAATTTTGTATAATTAACACGATTAGGATCCCCTAATTGCCAATTTTTCTCACTTCTTAGTAGTCCCTCGCTCTCATTATACCTTCCACCCACCTTCAACCAGAAGCAAACAAGCTCCAACCACAAAATACACTAACTCGCCATAAAGCACCCCCAAAACCAAAACTCAAAAAGTGTCAAAACTTTGGGCACCAAATTTATCACTCCTTCTCTCTACCCTCTAGCTCACGGCACACAAACAATAAAGTAAACCACGCACGCAGACACACGCAAACACCATCTCTCTATGCTCTAACCATTTAGAATCTCCACTTTCATTTCATTGCTTTAGAATTAGCTTACATTTTATCCACTTCTCTCTCTCTTCCCCATTCATTTCTTTAAGTTAGATTAGATTTAGATTGCATTGCATTACTAAGAAAAAAAAAAGTTAACTCGATTGATTAAGTAAAGTATGTGTGGTAACATCTGATGTTGCCTTTCTTAAGCATAGAAAAAAAAGATTACATTACATTAGCCACTTCCTCTTCTCTCTCCTTTATGTCTTTATGCCCATCATCACCCCAACTAAAACACAGACACAATGTCTCTCTTTCACACTCTCCCAATCTTCTTATGCATAATCTTCTTCACCAGCACCACTACTTCCACCACTCTCCCTCCTTCCTCTCCATCATTCCCATCCGGTCTGTCGTACCACATCGACTGTGGAAGTCCCACGAACTCCACCGACCAGTTCAACACGACGTGGCTCTCCGACCGCTACTTCAGCGGCGGCGCCACCGGAATCGTGTCGGAGCCGCTGCGCTTCCGCCACGGGCACGAGAAGACCCTCCGTTTCTTCCCAATCTCCTCCGGCAAGAAGAACTGCTACACCATTCCGAATCTTCCTCCCTCCCGCTACCTCCTCCGCACATTCGTCGTCTACGACAACTACGACGGCCGGTCCCACCCTCCCTCCTTCGACGTCGCCATCGCCGCCACCGTCGTCTTCTCCTGGCGCTCCCCGTGGCCCCAGTCCCTCGCCCGCGACGGCGCCTACGCTGACCTCTTCGCCACTATCACCGCCTCCTCGGAAGCCCTAATTTGCTTTTACAGCTTCGCCACTGATCCTCCGGTAGTCTCCTCGATTGAGCTCTTTGCCGCCGATCCAGCCTCCTATGACGCCGCCGCAATCGGTAAAAACGACAGCGTCTTAGTCAACTATGGTAGACTCTCCTGCGGCTCCAAGCAGTGGGGGCCGGGATTCTCCAACGACTCCGACCGGTTCGGCCGGTCGTGGCAGTCCGATTCGGACTTTCGAACCGGCCGGAGCAAGGTCCGCGCCATGTCGACGCGGAGTCGCATCAGCGGGACCGAACAGAAGCCGAATTACTTCCCGGAGAAGCTGTACCAGACTGCGGCGACGGCGGAGGAGGGCGGTGGTGTTCTGGAGTACGAATTGAGCGTGGACGCGAAGCTTGATTACTTGGTGTGGCTTCATTTTGCAGAAATTGAAGAGAGGGTGAGAAGGGTGGGAGAAAGAGTGTTTGATGTGTATATCAACGATGATAATTTAACTAGGGTTGATATATACAAGCAAGTTGGGGGTTTTGCTGCGTTTACATGGCATCACACTGTGAAGAATTTGAGTAGCAGCGTGTTGAGTGTGAAGCTCGTGGGTGTGGTGGGTGCGCCTCTGATTTGTGGGATTGAGAATTACGCTTTGGTGCCGAGTGATCCTTCCACTGTTCCGGAACAAGTGGTTGCCATGAAAGCATTGAAAGATTCGCTGCGGGTACCCGAAAGAATGGGTTGGAATGGTGATCCTTGTGCTCCTACTAATTGGGATGCTTGGGAGGGAGTTACCTGCCGTACGAGTAAGAATAATACTGCTCTGGTGATCAGTCAAATTGATTTGGGCAGTCAAGGCTTGAAAGGGTCCATAAGTGATCAAATTAGTCTTTTGTCAGATTTGGTAAGCCTGAATTTGAGTTCTAATTTGTTGGTGGGTGAAATACCTTCTGGACTTGGTCAAAAATCCTTGATACACCTGGACTTGTCCAACAATCAGTTAACAGGCCCCATACCAGATAGTATGGCCTCTTCAAGTTTGCAGCTTGTGCTATTGAATGGTAACTTATTGGAAGGACGAGTACCAGAGCAACTTTATTCAATTGGTGTGCATGGTGGAGCTATCGATCTCTCTGGAAACAAAGGTTTGTGTGGTGTACCATCTCTGCCAGATTGTCCTATGTTTTGGGAGAATGGAAAACTATCTACTCAGGGTAAAATTGCAATAGGCTTGTCCTGTCTCTTTGTTTTCTGTGTGATACTGCTGCTGGTCTATATTTACATTAGGAGAAGAAGGAATGACTATGACTTTGCTCTACCTCATGAATTAACATCATTAGCCACCAAGAGAAACCGGTATCAAAGGCAGAAATCCTTAATGGTTCTTGAGATGGAGAGTCAACACGCCAAGGGACTACCTTCACATTTTACTACACAATAACCATTTTTCTTAATGGAAATGGAATACTGATTTTCATAGTTTTTGGCCAAACATACAGCGACACAGCTTATTGAAAAGGGTTTGAATGTGTTGCAGCATCAAATGATGGAACAACACTGCAGCTTTTTTAGAAAAGAAATGGCTTTTCTCGTACAACTTTCTTTGTCTCGTCAAGGTTTTTGGAAGCCACTTATTGTACCATGCATGCTCCCCTCTGTGTCACATTGTTTCTTGACCCACGAAAAAAAAGCATATACCCTGTTATGTCAATACTTAGCCGCAACTTTTGCTGAATATGTGATAGGTACAACCCATTAATTTATGAAATTTGAGTCACAAATTAGTGTACATTTTTTCGTGGCACAGAGTCTGATTGACACTAACATTGTAGACCGATCTATGTAGCAAAAGACAAGTGATTGAAATTTACTGTACATTGTATTTCGAGCATCTTCTTTCTATTCAGACTTGAGAGGTTTGTAACTTGAGCACCAAAATATTTTTGTATATCAATTTTCTTTTATGCTATATAAACCTTTAGTGACAAATACCAATAGTTTCGAAAGATCATGTCAAAGTTAGTTTCAGTGGATTAAAATTTAATGTTATCTACATCAATAAAATTTGCATTTCTATT
>Glyma02g11090.1 sequence type=CDS gene model=Glyma02g11090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTCTCTTTCACACTCTCCCAATCTTCTTATGCATAATCTTCTTCACCAGCACCACTACTTCCACCACTCTCCCTCCTTCCTCTCCATCATTCCCATCCGGTCTGTCGTACCACATCGACTGTGGAAGTCCCACGAACTCCACCGACCAGTTCAACACGACGTGGCTCTCCGACCGCTACTTCAGCGGCGGCGCCACCGGAATCGTGTCGGAGCCGCTGCGCTTCCGCCACGGGCACGAGAAGACCCTCCGTTTCTTCCCAATCTCCTCCGGCAAGAAGAACTGCTACACCATTCCGAATCTTCCTCCCTCCCGCTACCTCCTCCGCACATTCGTCGTCTACGACAACTACGACGGCCGGTCCCACCCTCCCTCCTTCGACGTCGCCATCGCCGCCACCGTCGTCTTCTCCTGGCGCTCCCCGTGGCCCCAGTCCCTCGCCCGCGACGGCGCCTACGCTGACCTCTTCGCCACTATCACCGCCTCCTCGGAAGCCCTAATTTGCTTTTACAGCTTCGCCACTGATCCTCCGGTAGTCTCCTCGATTGAGCTCTTTGCCGCCGATCCAGCCTCCTATGACGCCGCCGCAATCGGTAAAAACGACAGCGTCTTAGTCAACTATGGTAGACTCTCCTGCGGCTCCAAGCAGTGGGGGCCGGGATTCTCCAACGACTCCGACCGGTTCGGCCGGTCGTGGCAGTCCGATTCGGACTTTCGAACCGGCCGGAGCAAGGTCCGCGCCATGTCGACGCGGAGTCGCATCAGCGGGACCGAACAGAAGCCGAATTACTTCCCGGAGAAGCTGTACCAGACTGCGGCGACGGCGGAGGAGGGCGGTGGTGTTCTGGAGTACGAATTGAGCGTGGACGCGAAGCTTGATTACTTGGTGTGGCTTCATTTTGCAGAAATTGAAGAGAGGGTGAGAAGGGTGGGAGAAAGAGTGTTTGATGTGTATATCAACGATGATAATTTAACTAGGGTTGATATATACAAGCAAGTTGGGGGTTTTGCTGCGTTTACATGGCATCACACTGTGAAGAATTTGAGTAGCAGCGTGTTGAGTGTGAAGCTCGTGGGTGTGGTGGGTGCGCCTCTGATTTGTGGGATTGAGAATTACGCTTTGGTGCCGAGTGATCCTTCCACTGTTCCGGAACAAGTGGTTGCCATGAAAGCATTGAAAGATTCGCTGCGGGTACCCGAAAGAATGGGTTGGAATGGTGATCCTTGTGCTCCTACTAATTGGGATGCTTGGGAGGGAGTTACCTGCCGTACGAGTAAGAATAATACTGCTCTGGTGATCAGTCAAATTGATTTGGGCAGTCAAGGCTTGAAAGGGTCCATAAGTGATCAAATTAGTCTTTTGTCAGATTTGGTAAGCCTGTAA >Glyma02g11090.2 sequence type=CDS gene model=Glyma02g11090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTCTCTTTCACACTCTCCCAATCTTCTTATGCATAATCTTCTTCACCAGCACCACTACTTCCACCACTCTCCCTCCTTCCTCTCCATCATTCCCATCCGGTCTGTCGTACCACATCGACTGTGGAAGTCCCACGAACTCCACCGACCAGTTCAACACGACGTGGCTCTCCGACCGCTACTTCAGCGGCGGCGCCACCGGAATCGTGTCGGAGCCGCTGCGCTTCCGCCACGGGCACGAGAAGACCCTCCGTTTCTTCCCAATCTCCTCCGGCAAGAAGAACTGCTACACCATTCCGAATCTTCCTCCCTCCCGCTACCTCCTCCGCACATTCGTCGTCTACGACAACTACGACGGCCGGTCCCACCCTCCCTCCTTCGACGTCGCCATCGCCGCCACCGTCGTCTTCTCCTGGCGCTCCCCGTGGCCCCAGTCCCTCGCCCGCGACGGCGCCTACGCTGACCTCTTCGCCACTATCACCGCCTCCTCGGAAGCCCTAATTTGCTTTTACAGCTTCGCCACTGATCCTCCGGTAGTCTCCTCGATTGAGCTCTTTGCCGCCGATCCAGCCTCCTATGACGCCGCCGCAATCGGTAAAAACGACAGCGTCTTAGTCAACTATGGTAGACTCTCCTGCGGCTCCAAGCAGTGGGGGCCGGGATTCTCCAACGACTCCGACCGGTTCGGCCGGTCGTGGCAGTCCGATTCGGACTTTCGAACCGGCCGGAGCAAGGTCCGCGCCATGTCGACGCGGAGTCGCATCAGCGGGACCGAACAGAAGCCGAATTACTTCCCGGAGAAGCTGTACCAGACTGCGGCGACGGCGGAGGAGGGCGGTGGTGTTCTGGAGTACGAATTGAGCGTGGACGCGAAGCTTGATTACTTGGTGTGGCTTCATTTTGCAGAAATTGAAGAGAGGGTGAGAAGGGTGGGAGAAAGAGTGTTTGATGTGTATATCAACGATGATAATTTAACTAGGGTTGATATATACAAGCAAGTTGGGGGTTTTGCTGCGTTTACATGGCATCACACTGTGAAGAATTTGAGTAGCAGCGTGTTGAGTGTGAAGCTCGTGGGTGTGGTGGGTGCGCCTCTGATTTGTGGGATTGAGAATTACGCTTTGGTGCCGAGTGATCCTTCCACTGTTCCGGAACAAGTGGTTGCCATGAAAGCATTGAAAGATTCGCTGCGGGTACCCGAAAGAATGGGTTGGAATGGTGATCCTTGTGCTCCTACTAATTGGGATGCTTGGGAGGGAGTTACCTGCCGTACGAGTAAGAATAATACTGCTCTGGTGATCAGTCAAATTGATTTGGGCAGTCAAGGCTTGAAAGGGTCCATAAGTGATCAAATTAGTCTTTTGTCAGATTTGGTAAGCCTGAATTTGAGTTCTAATTTGTTGGTGGGTGAAATACCTTCTGGACTTGGTCAAAAATCCTTGATACACCTGGACTTGTCCAACAATCAGTTAACAGGCCCCATACCAGATAGTATGGCCTCTTCAAGTTTGCAGCTTGTGCTATTGAATGGTAACTTATTGGAAGGACGAGTACCAGAGCAACTTTATTCAATTGGTGTGCATGGTGGAGCTATCGATCTCTCTGGAAACAAAGGTTTGTGTGGTGTACCATCTCTGCCAGATTGTCCTATGTTTTGGGAGAATGGAAAACTATCTACTCAGGGTAAAATTGCAATAGGCTTGTCCTGTCTCTTTGTTTTCTGTGTGATACTGCTGCTGGTCTATATTTACATTAGGAGAAGAAGGAATGACTATGACTTTGCTCTACCTCATGAATTAACATCATTAGCCACCAAGAGAAACCGGTATCAAAGGCAGAAATCCTTAATGGTTCTTGAGATGGAGAGTCAACACGCCAAGGGACTACCTTCACATTTTACTACACAATAA
>Glyma02g11090.1 sequence type=predicted peptide gene model=Glyma02g11090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSLFHTLPIFLCIIFFTSTTTSTTLPPSSPSFPSGLSYHIDCGSPTNSTDQFNTTWLSDRYFSGGATGIVSEPLRFRHGHEKTLRFFPISSGKKNCYTIPNLPPSRYLLRTFVVYDNYDGRSHPPSFDVAIAATVVFSWRSPWPQSLARDGAYADLFATITASSEALICFYSFATDPPVVSSIELFAADPASYDAAAIGKNDSVLVNYGRLSCGSKQWGPGFSNDSDRFGRSWQSDSDFRTGRSKVRAMSTRSRISGTEQKPNYFPEKLYQTAATAEEGGGVLEYELSVDAKLDYLVWLHFAEIEERVRRVGERVFDVYINDDNLTRVDIYKQVGGFAAFTWHHTVKNLSSSVLSVKLVGVVGAPLICGIENYALVPSDPSTVPEQVVAMKALKDSLRVPERMGWNGDPCAPTNWDAWEGVTCRTSKNNTALVISQIDLGSQGLKGSISDQISLLSDLVSL* >Glyma02g11090.2 sequence type=predicted peptide gene model=Glyma02g11090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSLFHTLPIFLCIIFFTSTTTSTTLPPSSPSFPSGLSYHIDCGSPTNSTDQFNTTWLSDRYFSGGATGIVSEPLRFRHGHEKTLRFFPISSGKKNCYTIPNLPPSRYLLRTFVVYDNYDGRSHPPSFDVAIAATVVFSWRSPWPQSLARDGAYADLFATITASSEALICFYSFATDPPVVSSIELFAADPASYDAAAIGKNDSVLVNYGRLSCGSKQWGPGFSNDSDRFGRSWQSDSDFRTGRSKVRAMSTRSRISGTEQKPNYFPEKLYQTAATAEEGGGVLEYELSVDAKLDYLVWLHFAEIEERVRRVGERVFDVYINDDNLTRVDIYKQVGGFAAFTWHHTVKNLSSSVLSVKLVGVVGAPLICGIENYALVPSDPSTVPEQVVAMKALKDSLRVPERMGWNGDPCAPTNWDAWEGVTCRTSKNNTALVISQIDLGSQGLKGSISDQISLLSDLVSLNLSSNLLVGEIPSGLGQKSLIHLDLSNNQLTGPIPDSMASSSLQLVLLNGNLLEGRVPEQLYSIGVHGGAIDLSGNKGLCGVPSLPDCPMFWENGKLSTQGKIAIGLSCLFVFCVILLLVYIYIRRRRNDYDFALPHELTSLATKRNRYQRQKSLMVLEMESQHAKGLPSHFTTQ*
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