Glyma02g10710 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma02g10710

Feature Type:	gene_model
Chromosome:	Gm02
Start:	8611391
stop:	8616070
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g10710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G13110	AT	Annotation by Michelle Graham. TAIR10: glucose-6-phosphate dehydrogenase 2 \| chr5:4158952-4161640 FORWARD LENGTH=596	SoyBase	E_val: 0	ISS
GO:0006006	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucose metabolic process	SoyBase	N/A	ISS
GO:0009051	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt, oxidative branch	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0004345	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glucose-6-phosphate dehydrogenase activity	SoyBase	N/A	ISS
GO:0050661	GO-mf	Annotation by Michelle Graham. GO Molecular Function: NADP binding	SoyBase	N/A	ISS
KOG0563	KOG	Glucose-6-phosphate 1-dehydrogenase	JGI		ISS
PTHR23429	Panther	GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE (G6PD)	JGI		ISS
PF00479	PFAM	Glucose-6-phosphate dehydrogenase, NAD binding domain	JGI		ISS
PF02781	PFAM	Glucose-6-phosphate dehydrogenase, C-terminal domain	JGI		ISS
UniRef100_I1JDT9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Glycine max RepID=I1JDT9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1JDT9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Glycine max RepID=I1JDT9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g10710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g10710

Paralog	Evidence	Comments
Glyma18g52110	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g10710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g096800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g10710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g10710

Limit To All Plant Sequences

>Glyma02g10710.2   sequence type=transcript   gene model=Glyma02g10710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCACTTTTCATGATGCAGACGCAGACATGCAGTACGACTGTACGAGTTTGGAAAAAAAATTTGGAAATTGTTATTAAATTGAGAAAAATTCAAAATTTGGTTAGGTGCACTGCGACGGGACATAAAGCAAAGACAAAACACAATTTTTTTTGTTAAACCGTGTAAATTAGAGTCTTTGATATCCTATGAAATAATGAGATATTCTCAGAAGTTTGAATCATTTGGGTTGATTATATGAATAATTTTTTTATTTAGCCTCCTTTCCAAAAATGTATTCAACAAAAATCGAATTCAAGTTTGGTTTTACAAATTGGGCGTGCTATGAATTAAGCTAAACCTATTGGATGCAAAATTTGCATACCTAAGAAGAGTATAGAAAAAAAGAAAAAGAAACCTAATAGAGTGAAGGGAAAGGACAAGCATCCCTTCGGAGATCTCAAGGGACTTTCTCTCGTTCTCTCCGAACTCACACCCTTTCTCTTATTAACCCTTTTTCTCCTCTCTTCCCTTCCCAATTATTCATCCCTCATGGCCACTGCGCTTTATTCGACTCATTGTCGTTCACTCGCTACTTCCTCTTCCTCGTCGTCGTTGCAACCCTCTCCTCTGTCGTCTAACCTCGCTTACCTTCAACGCCTCACCTTCTCACAGCGCTTTCTCCCCTCCAAGGTTTCTCTCAAATCTCAACCCCAAACTTATCAGATTCCCGTTCTCACCCAGCAGCAGGAAGGTACAGTAGCAGCTGCTGTGACCCCTGTTGAAAACGGCACTTCTCACAAGCAGTTGAAGCCTGACTTATTGTCTGTTAAGTCCCCAGAGGAGTCTCGGGCTGAAGACGGTTTTGAAAAGGATGAAAATGAGTCCAGTGTTAGTATTACTGTTGTTGGAGCCTCTGGAGACCTTGCTAAGAAGAAGATATTCCCGGCTCTCTTTGCGCTTTACTACGAGGATTGTCTCCCTAAGCACTTCACCATCTATGGTTATGCACGAAGTAAGATGACTGATGCAGAACTGAGAAATATGGTTAGCAAGACCCTCACTTGTAGAATTGATAAGAGAGAAAACTGCAATGAGAAGATGGACCAATTTCTAAAAAGATGTTTCTATCATTCTGGTCAATATGATTCTCAGGAAAACTTTGCAGCGCTAGACAAGAAGCTGAAGGAACATGAGGGTGGGAGAACTTCTAATCGCCTGTTTTATCTTTCAATTCCTCCTAATATATTCATAGATGCTGTTAAATGTGCAAGCTTGTCAGCTTCTTCTGGCAATGGTTGGACCAGGGTCATTGTTGAAAAGCCTTTTGGTCGTGATTCAGATTCTTCAGCTGCATTAACTAGATCACTCAAGCAGTATCTGACAGAGGATCAAATTTTCAGGATTGACCACTATCTTGGGAAAGAGCTTGTGGAAAATCTTTCTGTTCTCCGATTCTCAAATCTCATCTTTGAACCATTATGGTCAAGGCAATATATAAGAAATGTACAGTTGATATTCTCAGAAGATTTTGGCACTGAAGGGCGTGGCGGGTACTTTGACCATTATGGTATCATAAGAGACATTATGCAGAATCATTTACTTCAAATACTAGCACTCTTTGCAATGGAAACCCCTGTTAGTTTGGATGCCGAGGATATTAGAAATGAAAAGGTCAAGGTTCTTCGTTCAATGAGACCCCTGCGACTTGATGATATGGTTATAGGTCAGTATAAGAGCCACACAAGAGGAGGCGTAACATATCCAGCATACGTTGATGACAAAACTGTACCAAGCGGCAGCTTAACTCCAACATTTGCTGCAGCTGCCCTCTTCATAGATAATGCAAGATGGGATGGGGTACCTTTCCTAATGAAGGCTGGGAAAGCATTACACAACAAAAGAGCTGAGATACGGGTACAGTTCAGGCATGTACCAGGTAATCTGTACAATCGGAATTTTGGTACTGATCTTGATCGGGCTACAAATGAACTTGTTATAAGAGTTCAGCCTGACGAGGCTATATATTTGAAGATAAACAACAAAGTTCCAGGTCTGGGAATGAAGTTGGACCGCAGTAATCTGAATCTTCACTACGCAGCAAGGTATTTTCCTTTTACTCTAAATTAACTTTATGGGACCCCTGAAATACACTTGTTAGATTATTAACTGACATTCACCTTATTCTCACCTTAAACTGGTGGCAAAATATGTTAACATTGATCCAATGTCCATCTAATCTTTGGGGCATGTTTTTTGCCACTCCAATGACTCCATAAATGCAGGTTATTT

Coding sequences of Glyma02g10710

Limit To All Plant Sequences

>Glyma02g10710.1   sequence type=CDS   gene model=Glyma02g10710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACTGCGCTTTATTCGACTCATTGTCGTTCACTCGCTACTTCCTCTTCCTCGTCGTCGTTGCAACCCTCTCCTCTGTCGTCTAACCTCGCTTACCTTCAACGCCTCACCTTCTCACAGCGCTTTCTCCCCTCCAAGGTTTCTCTCAAATCTCAACCCCAAACTTATCAGATTCCCGTTCTCACCCAGCAGCAGGAAGGTACAGTAGCAGCTGCTGTGACCCCTGTTGAAAACGGCACTTCTCACAAGCAGTTGAAGCCTGACTTATTGTCTGTTAAGTCCCCAGAGGAGTCTCGGGCTGAAGACGGTTTTGAAAAGGATGAAAATGAGTCCAGTGTTAGTATTACTGTTGTTGGAGCCTCTGGAGACCTTGCTAAGAAGAAGATATTCCCGGCTCTCTTTGCGCTTTACTACGAGGATTGTCTCCCTAAGCACTTCACCATCTATGGTTATGCACGAAGTAAGATGACTGATGCAGAACTGAGAAATATGGTTAGCAAGACCCTCACTTGTAGAATTGATAAGAGAGAAAACTGCAATGAGAAGATGGACCAATTTCTAAAAAGATGTTTCTATCATTCTGGTCAATATGATTCTCAGGAAAACTTTGCAGCGCTAGACAAGAAGCTGAAGGAACATGAGGGTGGGAGAACTTCTAATCGCCTGTTTTATCTTTCAATTCCTCCTAATATATTCATAGATGCTGTTAAATGTGCAAGCTTGTCAGCTTCTTCTGGCAATGGTTGGACCAGGGTCATTGTTGAAAAGCCTTTTGGTCGTGATTCAGATTCTTCAGCTGCATTAACTAGATCACTCAAGCAGTATCTGACAGAGGATCAAATTTTCAGGATTGACCACTATCTTGGGAAAGAGCTTGTGGAAAATCTTTCTGTTCTCCGATTCTCAAATCTCATCTTTGAACCATTATGGTCAAGGCAATATATAAGAAATGTACAGTTGATATTCTCAGAAGATTTTGGCACTGAAGGGCGTGGCGGGTACTTTGACCATTATGGTATCATAAGAGACATTATGCAGAATCATTTACTTCAAATACTAGCACTCTTTGCAATGGAAACCCCTGTTAGTTTGGATGCCGAGGATATTAGAAATGAAAAGGTCAAGGTTCTTCGTTCAATGAGACCCCTGCGACTTGATGATATGGTTATAGGTCAGTATAAGAGCCACACAAGAGGAGGCGTAACATATCCAGCATACGTTGATGACAAAACTGTACCAAGCGGCAGCTTAACTCCAACATTTGCTGCAGCTGCCCTCTTCATAGATAATGCAAGATGGGATGGGGTACCTTTCCTAATGAAGGCTGGGAAAGCATTACACAACAAAAGAGCTGAGATACGGGTACAGTTCAGGCATGTACCAGGTAATCTGTACAATCGGAATTTTGGTACTGATCTTGATCGGGCTACAAATGAACTTGTTATAAGAGTTCAGCCTGACGAGGCTATATATTTGAAGATAAACAACAAAGTTCCAGGTCTGGGAATGAAGTTGGACCGCAGTAATCTGAATCTTCACTACGCAGCAAGATATTCAAAGGAGATTCCAGATGCTTATGAGAGGCTACTTCTGGATGCCATTGAAGGAGAAAGAAGACTCTTTATACGTAGCGATGAACTGGATGCTGCTTGGTCACTCTTTACACCTGTACTGAAGGAGCTTGAAGAGAAGAAGATAATTCCAGAGTACTATCCTTATGGTAGTAGGGGTCCTGTTGGTGCTCACTATCTTGCAGCCAGACACAATGTGCGGTGGGGTGACCTTGGGACAGACGTAGACCAATAA

>Glyma02g10710.2   sequence type=CDS   gene model=Glyma02g10710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACTGCGCTTTATTCGACTCATTGTCGTTCACTCGCTACTTCCTCTTCCTCGTCGTCGTTGCAACCCTCTCCTCTGTCGTCTAACCTCGCTTACCTTCAACGCCTCACCTTCTCACAGCGCTTTCTCCCCTCCAAGGTTTCTCTCAAATCTCAACCCCAAACTTATCAGATTCCCGTTCTCACCCAGCAGCAGGAAGGTACAGTAGCAGCTGCTGTGACCCCTGTTGAAAACGGCACTTCTCACAAGCAGTTGAAGCCTGACTTATTGTCTGTTAAGTCCCCAGAGGAGTCTCGGGCTGAAGACGGTTTTGAAAAGGATGAAAATGAGTCCAGTGTTAGTATTACTGTTGTTGGAGCCTCTGGAGACCTTGCTAAGAAGAAGATATTCCCGGCTCTCTTTGCGCTTTACTACGAGGATTGTCTCCCTAAGCACTTCACCATCTATGGTTATGCACGAAGTAAGATGACTGATGCAGAACTGAGAAATATGGTTAGCAAGACCCTCACTTGTAGAATTGATAAGAGAGAAAACTGCAATGAGAAGATGGACCAATTTCTAAAAAGATGTTTCTATCATTCTGGTCAATATGATTCTCAGGAAAACTTTGCAGCGCTAGACAAGAAGCTGAAGGAACATGAGGGTGGGAGAACTTCTAATCGCCTGTTTTATCTTTCAATTCCTCCTAATATATTCATAGATGCTGTTAAATGTGCAAGCTTGTCAGCTTCTTCTGGCAATGGTTGGACCAGGGTCATTGTTGAAAAGCCTTTTGGTCGTGATTCAGATTCTTCAGCTGCATTAACTAGATCACTCAAGCAGTATCTGACAGAGGATCAAATTTTCAGGATTGACCACTATCTTGGGAAAGAGCTTGTGGAAAATCTTTCTGTTCTCCGATTCTCAAATCTCATCTTTGAACCATTATGGTCAAGGCAATATATAAGAAATGTACAGTTGATATTCTCAGAAGATTTTGGCACTGAAGGGCGTGGCGGGTACTTTGACCATTATGGTATCATAAGAGACATTATGCAGAATCATTTACTTCAAATACTAGCACTCTTTGCAATGGAAACCCCTGTTAGTTTGGATGCCGAGGATATTAGAAATGAAAAGGTCAAGGTTCTTCGTTCAATGAGACCCCTGCGACTTGATGATATGGTTATAGGTCAGTATAAGAGCCACACAAGAGGAGGCGTAACATATCCAGCATACGTTGATGACAAAACTGTACCAAGCGGCAGCTTAACTCCAACATTTGCTGCAGCTGCCCTCTTCATAGATAATGCAAGATGGGATGGGGTACCTTTCCTAATGAAGGCTGGGAAAGCATTACACAACAAAAGAGCTGAGATACGGGTACAGTTCAGGCATGTACCAGGTAATCTGTACAATCGGAATTTTGGTACTGATCTTGATCGGGCTACAAATGAACTTGTTATAAGAGTTCAGCCTGACGAGGCTATATATTTGAAGATAAACAACAAAGTTCCAGGTCTGGGAATGAAGTTGGACCGCAGTAATCTGAATCTTCACTACGCAGCAAGGTATTTTCCTTTTACTCTAAATTAA

Predicted protein sequences of Glyma02g10710

Limit To All Plant Sequences

>Glyma02g10710.1   sequence type=predicted peptide   gene model=Glyma02g10710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATALYSTHCRSLATSSSSSSLQPSPLSSNLAYLQRLTFSQRFLPSKVSLKSQPQTYQIPVLTQQQEGTVAAAVTPVENGTSHKQLKPDLLSVKSPEESRAEDGFEKDENESSVSITVVGASGDLAKKKIFPALFALYYEDCLPKHFTIYGYARSKMTDAELRNMVSKTLTCRIDKRENCNEKMDQFLKRCFYHSGQYDSQENFAALDKKLKEHEGGRTSNRLFYLSIPPNIFIDAVKCASLSASSGNGWTRVIVEKPFGRDSDSSAALTRSLKQYLTEDQIFRIDHYLGKELVENLSVLRFSNLIFEPLWSRQYIRNVQLIFSEDFGTEGRGGYFDHYGIIRDIMQNHLLQILALFAMETPVSLDAEDIRNEKVKVLRSMRPLRLDDMVIGQYKSHTRGGVTYPAYVDDKTVPSGSLTPTFAAAALFIDNARWDGVPFLMKAGKALHNKRAEIRVQFRHVPGNLYNRNFGTDLDRATNELVIRVQPDEAIYLKINNKVPGLGMKLDRSNLNLHYAARYSKEIPDAYERLLLDAIEGERRLFIRSDELDAAWSLFTPVLKELEEKKIIPEYYPYGSRGPVGAHYLAARHNVRWGDLGTDVDQ*

>Glyma02g10710.2   sequence type=predicted peptide   gene model=Glyma02g10710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATALYSTHCRSLATSSSSSSLQPSPLSSNLAYLQRLTFSQRFLPSKVSLKSQPQTYQIPVLTQQQEGTVAAAVTPVENGTSHKQLKPDLLSVKSPEESRAEDGFEKDENESSVSITVVGASGDLAKKKIFPALFALYYEDCLPKHFTIYGYARSKMTDAELRNMVSKTLTCRIDKRENCNEKMDQFLKRCFYHSGQYDSQENFAALDKKLKEHEGGRTSNRLFYLSIPPNIFIDAVKCASLSASSGNGWTRVIVEKPFGRDSDSSAALTRSLKQYLTEDQIFRIDHYLGKELVENLSVLRFSNLIFEPLWSRQYIRNVQLIFSEDFGTEGRGGYFDHYGIIRDIMQNHLLQILALFAMETPVSLDAEDIRNEKVKVLRSMRPLRLDDMVIGQYKSHTRGGVTYPAYVDDKTVPSGSLTPTFAAAALFIDNARWDGVPFLMKAGKALHNKRAEIRVQFRHVPGNLYNRNFGTDLDRATNELVIRVQPDEAIYLKINNKVPGLGMKLDRSNLNLHYAARYFPFTLN*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain