Glyma02g10690 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma02g10690

Feature Type:	gene_model
Chromosome:	Gm02
Start:	8594084
stop:	8596947
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g10690

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G69040	AT	Annotation by Michelle Graham. TAIR10: ACT domain repeat 4 \| chr1:25957843-25960079 FORWARD LENGTH=455	SoyBase	E_val: 9.00E-173	ISS
GO:0006521	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cellular amino acid metabolic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009735	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cytokinin stimulus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016597	GO-mf	Annotation by Michelle Graham. GO Molecular Function: amino acid binding	SoyBase	N/A	ISS
PTHR13734	Panther	TRNA-NUCLEOTIDYLTRANSFERASE 1	JGI		ISS
PTHR13734:SF23	Panther	ACR3 (ACT DOMAIN REPEAT 3)	JGI		ISS
PF01842	PFAM	ACT domain	JGI		ISS
UniRef100_B9RMA6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Amino acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9RMA6_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JDT8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JDT8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g10690

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g10690

Paralog	Evidence	Comments
Glyma18g52120	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g10690 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g096600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g10690

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g10690

Limit To All Plant Sequences

>Glyma02g10690.1   sequence type=CDS   gene model=Glyma02g10690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTTTTTGCAGAGTTGCTGTGGATAACATTTCAAGCAGAACAGACACTGTGATAAAGGTTGATAGCGCGAACAAGCGTGGGAGCTTGTTGGAGGTGGTTCAGGTTCTTACTGATATGAATCTCAGTGTTAGAAGAGCTTATATTTCCTCTGATGGAGAATGGTTCATGGATGTTTTTCATGTCACGGATCCAAATGGGAAAAAGTTTATGCAAGATGATGTAGCTGACCGCATTCAACAGTCACTGGGTCCAAGAGCCTCTAGTTTTCGATCCTTGAGAAGGTCTGTTGGGGTTCAAGCTGAAGCAGAACATACAACCATTGAATTAACTGGAAGAGACAGGCCAGGATTGCTCTCGGAAGTGTTTGCTGTTCTTGCAGACCTCAAATGCAATGTGGTAGCAGCAGAAGTCTGGACCCACAATTCAAGAATGGCATCTGTTGTTTACATCACAGATGAGGCGACGGGATTGTCCATCGACGATCCGGATCGCCTTGCCAAGATTAAGCAGCTTCTACTGTATGTGCTGAAAGGAGACATAGATAAGAAGAGCGCCAACACTGCTGTTTCTGTTGGTTCTACTCACAAGGATAGGAGGCTGCATCAATTGATGTACGCTGACCGCGATTATGACGTAGATGATGGGGATTCTGGGTCAACAAGTGACAGGAATAAGCTCCTTGTAACTGTTGATGATTGCATAGATAAGGGATACACTGTTGTGAACTTGAGGTGTCCAGACAGACCAAAGTTACTGTTTGATACCGTGTGTACACTCACAGATATGCAGTATGTTGTGTACCATGGAACTGTCATTGCTGAAGGACCAGAGGCATATCAGGAATATTATATAAGGCATGTGGATGGAAGTCCTATCAGTTCTGAAGCAGAAAGGCAAAGAGTGATTCATTGTTTGGAGGCTGCTATTAGGAGACGAACTTCTGAGGGCATAAAGCTAGAACTATGTGGGGAAGACAGGGTTGGCCTTCTGTCTGATGTAACTCGCATCTTTAGAGAAAATGGTCTTTCAGTCAACCGTGCTGAAGTTACAACCAGGGGCACCCAAGCCATGAATGTTTTCTATGTGACTGATGTATCTGGAAATCCAGTTAATAGTGAAACAATTGAAGCAGTTCGAAAAGAGATTGGCTTGACTATACTGCATGTAAAAGATGATGTCTGCTCAAAACCTCCACCCCAAGAGAGTGGAAAATTCTCTTTGTCTAATCTCTTTCGGTCAAGCTCTGAGAAATTTCTCTACAACTTGGGCCTGATGAAGTCTTATTCTTGA

Predicted protein sequences of Glyma02g10690

Limit To All Plant Sequences

>Glyma02g10690.1   sequence type=predicted peptide   gene model=Glyma02g10690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFFCRVAVDNISSRTDTVIKVDSANKRGSLLEVVQVLTDMNLSVRRAYISSDGEWFMDVFHVTDPNGKKFMQDDVADRIQQSLGPRASSFRSLRRSVGVQAEAEHTTIELTGRDRPGLLSEVFAVLADLKCNVVAAEVWTHNSRMASVVYITDEATGLSIDDPDRLAKIKQLLLYVLKGDIDKKSANTAVSVGSTHKDRRLHQLMYADRDYDVDDGDSGSTSDRNKLLVTVDDCIDKGYTVVNLRCPDRPKLLFDTVCTLTDMQYVVYHGTVIAEGPEAYQEYYIRHVDGSPISSEAERQRVIHCLEAAIRRRTSEGIKLELCGEDRVGLLSDVTRIFRENGLSVNRAEVTTRGTQAMNVFYVTDVSGNPVNSETIEAVRKEIGLTILHVKDDVCSKPPPQESGKFSLSNLFRSSSEKFLYNLGLMKSYS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain