Glyma02g10590 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma02g10590

Feature Type:	gene_model
Chromosome:	Gm02
Start:	8500005
stop:	8508510
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g10590

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G13550	AT	Annotation by Michelle Graham. TAIR10: sulfate transporter 4.1 \| chr5:4355412-4359490 REVERSE LENGTH=685	SoyBase	E_val: 0	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0008272	GO-bp	Annotation by Michelle Graham. GO Biological Process: sulfate transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0008271	GO-mf	Annotation by Michelle Graham. GO Molecular Function: secondary active sulfate transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015116	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sulfate transmembrane transporter activity	SoyBase	N/A	ISS
KOG0236	KOG	Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family)	JGI		ISS
PTHR11814	Panther	SULFATE TRANSPORTER	JGI		ISS
PTHR11814:SF46	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00916	PFAM	Sulfate transporter family	JGI		ISS
PF01740	PFAM	STAS domain	JGI		ISS
UniRef100_G7KVN8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Sulfate transporter n=1 Tax=Medicago truncatula RepID=G7KVN8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JDS8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JDS8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g10590

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g10590

Paralog	Evidence	Comments
Glyma18g52270	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g10590 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g095500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g10590

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g10590

Limit To All Plant Sequences

>Glyma02g10590.2   sequence type=transcript   gene model=Glyma02g10590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTCAACACCACCATTGCATTCCCTTTACGATTTTTAAACGACGCGCCACACCTAGCTACTGCATGCTCTGAACTCTTAACTCTCACGCCATATATATATATATATATAATGCGCCGGCGGTGCGCATGGAGATAACCTACGCATCGCCAAGTTTCTCAGACCTCCGCGCCGCCGCTACCTCCTCCTCCATGCCGTCGTCAGCGCGTCCCGTCAGGATCATTCCTCTCCAGCACCCGACCGCCACGACGTCGTCGTCATCGCCGCCGAACGCTGCGTTCTCGCGCTGGACGGCGAAGCTCCGGCGAATGACGTGGATGGAGTGGATCGAGTTCTTCCTCCCTTGCCTCCGCTGGATTCGCATCTACAAATGGCGCGAGTATTTCCAGGTCGATCTCATGGCCGGAATCACCGTCGGTGTCATGCTCGTTCCTCAGTCGATGTCCTATGCAAAATTGGCTGGACTTCAACCGATATATGGACTCTACTCTGGTTTTGTGCCCCTATTTGTATATGCCATATTTGGGTCTTCTCGCCAGCTTGCAGTAGGTCCGGTGGCATTGGTTTCTCTCTTGGTCTCTAATGTGCTAGGTAACATAGCTGATTCATCCACTGAGTTATACACAGAGCTGGCAATATTACTGTCCCTTATGGTTGGGATAATGGAGTGCATAATGGGACTCTTGAGGCTTGGATGGCTTATTCGTTTCATTAGCCATTCAGTGATATCTGGCTTTACAACCGCTTCAGCTATTGTCATTGGTTTATCTCAAGCAAAATACTTCTTGGGGTATGATATAGATGGGAGTAGCAAGATCATTCCAGTAGTTAAGAGTATAATAGCTGGAGCAGATAAGTTTTCATGGCCCCCCTTTGTGATGGGATCCATTATGCTTGCGATACTACTTGTCATGAAACACCTGGGAAAGTCGAGGAAGTACTTGCGATTCTTGAGAGCTGCCGGTCCTCTTACAGCAGTAGTTCTGGGGACAGTTTTTGCAAAAATATTTCATCCATCATCAATTTCTTTGGTGGGTGATATACCTCAAGGCCTACCAAAATTTTCTGTTCCAAAATCTTTTGAGTATGCACAGTCCTTAATTCCAACTGCTCTTCTCATAACTGGTGTGGCTATACTGGAATCAGTGGGAATTGCCAAGGCATTAGCAGCGAAAAATGGATACGAGTTGGATTCAAATCAAGAGTTGTTCGGTCTTGGTGTTTCCAATGTTCTTGGTTCATTTTTTTCAGCATACCCCACAACAGGATCCTTTTCAAGGTCAGCTGTAAATCATGAAAGCGGTGCAAAATCTGGTGTATCTGGGATAGTTTTAGGAATTATAATGACCTGTGCACTTTTGTTTCTAACACCATTATTTGAGTACATACCTCAGTGCACCCTTGCTGCCATTGTGATCTCTGCTGTGATAGGTCTGGTAGATTATGATGAGGCCATTTTTTTGTGGCGTGTAGATAAGAAAGATTTTCTTCTTTGGACCATTACTAGCACTACAACATTGTTCCTTGGTATTGAGATTGGCGTCCTTGTTGGGGTTGGGGTTTCACTTGCTTTTGTCATTCATGAGTCAGCAAATCCACATATTGCTGTTTTGGGTCGTTTGCCAGGGACAACTGTTTATAGGAATGTTAAACAGTACCCTGAAGCATATACATATAATGGAATTGTAATCGTTCGTGTTGATGCTCCAATTTATTTTGCAAACACAAGTTACATAAAGGACAGGTAATGAGAAATGAGTTGTAATTGACATTTTTCCAATCAAGAGCCTGCCTTAATTCATTTAGAGTTCTCTTATCAGGTTGCGTGAATACGAAGTTGATGTTGATTGTTCTAAAAGACATGGACCTGAGGTTGAAAGAATTTATTTTGTGATTCTAGAGATGGCACCTGTGACCTACATAGATTCTAGTGCTGTTCAGGCTTTGAAAGACTTGTATCAGGAGTACAAATTACGGGACATTCAGATTGCAATATCCAATCCAAGTCCAGAAGTTCTGCTTACCTTGTCTAGATCCGGTCTGGTGGAGTTGATAGGCAAAGAATGGTACTTTGTGAGAGTACATGATGCTGTTCAAGTTTGCTTGCAACATGTTCAAAGCTTGAAAGGGGGATCTAACAGTCCACAAGCACCATTCTCTTCATTAGAAGACAAACCAAGTTTGTTTGCCCGATTATCAAAAGAGAGAGGGGAGAAGCTTTCAATTACCGACTTGGAGTCTGGTAATGGCAGGCCACCACTCCCCAAGGAGAGAGATTCCCAATTGGAGCCATTGTTGTCTAAAGATCATTGAAGTCTAGTTTGTATAGTAAAAAATGTATTTAGCCATTCTTTCAAATAATGAATAGGTTAAAGTTAAACCGTGTGTAATCAAGACAATGTTAAAAAATAATTTGTGTAATATTTGATTGGCCGGTTGTTGTAAAATTAAATGATTTTTTAAGAATGGTTTTATTATGTAAATCGTCTATCAGCTGTGTATACCTAATATGAAAGTCTTGTTATGTTTTAAGTTAATTACAAAGCTACTTACGGGATTGATTTGCTCTTCTTAGAAGAGATTAGTTTATGACCTCTTAACAAAAGA

Coding sequences of Glyma02g10590

Limit To All Plant Sequences

>Glyma02g10590.1   sequence type=CDS   gene model=Glyma02g10590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGATAACCTACGCATCGCCAAGTTTCTCAGACCTCCGCGCCGCCGCTACCTCCTCCTCCATGCCGTCGTCAGCGCGTCCCGTCAGGATCATTCCTCTCCAGCACCCGACCGCCACGACGTCGTCGTCATCGCCGCCGAACGCTGCGTTCTCGCGCTGGACGGCGAAGCTCCGGCGAATGACGTGGATGGAGTGGATCGAGTTCTTCCTCCCTTGCCTCCGCTGGATTCGCATCTACAAATGGCGCGAGTATTTCCAGGTCGATCTCATGGCCGGAATCACCGTCGGTGTCATGCTCGTTCCTCAGTCGATGTCCTATGCAAAATTGGCTGGACTTCAACCGATATATGGACTCTACTCTGGTTTTGTGCCCCTATTTGTATATGCCATATTTGGGTCTTCTCGCCAGCTTGCAGTAGGTCCGGTGGCATTGGTTTCTCTCTTGGTCTCTAATGTGCTAGGTAACATAGCTGATTCATCCACTGAGTTATACACAGAGCTGGCAATATTACTGTCCCTTATGGTTGGGATAATGGAGTGCATAATGGGACTCTTGAGGCTTGGATGGCTTATTCGTTTCATTAGCCATTCAGTGATATCTGGCTTTACAACCGCTTCAGCTATTGTCATTGGTTTATCTCAAGCAAAATACTTCTTGGGGTATGATATAGATGGGAGTAGCAAGATCATTCCAGTAGTTAAGAGTATAATAGCTGGAGCAGATAAGTTTTCATGGCCCCCCTTTGTGATGGGATCCATTATGCTTGCGATACTACTTGTCATGAAACACCTGGGAAAGTCGAGGAAGTACTTGCGATTCTTGAGAGCTGCCGGTCCTCTTACAGCAGTAGTTCTGGGGACAGTTTTTGCAAAAATATTTCATCCATCATCAATTTCTTTGGTGGGTGATATACCTCAAGGCCTACCAAAATTTTCTGTTCCAAAATCTTTTGAGTATGCACAGTCCTTAATTCCAACTGCTCTTCTCATAACTGGTGTGGCTATACTGGAATCAGTGGGAATTGCCAAGGCATTAGCAGCGAAAAATGGATACGAGTTGGATTCAAATCAAGAGTTGTTCGGTCTTGGTGTTTCCAATGTTCTTGGTTCATTTTTTTCAGCATACCCCACAACAGGATCCTTTTCAAGGTCAGCTGTAAATCATGAAAGCGGTGCAAAATCTGGTGTATCTGGGATAGTTTTAGGAATTATAATGACCTGTGCACTTTTGTTTCTAACACCATTATTTGAGTACATACCTCAGTGCACCCTTGCTGCCATTGTGATCTCTGCTGTGATAGGTCTGGTAGATTATGATGAGGCCATTTTTTTGTGGCGTGTAGATAAGAAAGATTTTCTTCTTTGGACCATTACTAGCACTACAACATTGTTCCTTGGTATTGAGATTGGCGTCCTTGTTGGGGTTGGGGTTTCACTTGCTTTTGTCATTCATGAGTCAGCAAATCCACATATTGCTGTTTTGGGTCGTTTGCCAGGGACAACTGTTTATAGGAATGTTAAACAGTACCCTGAAGCATATACATATAATGGAATTGTAATCGTTCGTGTTGATGCTCCAATTTATTTTGCAAACACAAGTTACATAAAGGACAGGTTGCGTGAATACGAAGTTGATGTTGATTGTTCTAAAAGACATGGACCTGAGGTTGAAAGAATTTATTTTGTGATTCTAGAGATGGCACCTGTGACCTACATAGATTCTAGTGCTGTTCAGGCTTTGAAAGACTTGTATCAGGAGTACAAATTACGGGACATTCAGATTGCAATATCCAATCCAAGTCCAGAAGTTCTGCTTACCTTGTCTAGATCCGGTCTGGTGGAGTTGATAGGCAAAGAATGGTACTTTGTGAGAGTACATGATGCTGTTCAAGTTTGCTTGCAACATGTTCAAAGCTTGAAAGGGGGATCTAACAGTCCACAAGCACCATTCTCTTCATTAGAAGACAAACCAAGTTTGTTTGCCCGATTATCAAAAGAGAGAGGGGAGAAGCTTTCAATTACCGACTTGGAGTCTGGTAATGGCAGGCCACCACTCCCCAAGGAGAGAGATTCCCAATTGGAGCCATTGTTGTCTAAAGATCATTGA

>Glyma02g10590.2   sequence type=CDS   gene model=Glyma02g10590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGATAACCTACGCATCGCCAAGTTTCTCAGACCTCCGCGCCGCCGCTACCTCCTCCTCCATGCCGTCGTCAGCGCGTCCCGTCAGGATCATTCCTCTCCAGCACCCGACCGCCACGACGTCGTCGTCATCGCCGCCGAACGCTGCGTTCTCGCGCTGGACGGCGAAGCTCCGGCGAATGACGTGGATGGAGTGGATCGAGTTCTTCCTCCCTTGCCTCCGCTGGATTCGCATCTACAAATGGCGCGAGTATTTCCAGGTCGATCTCATGGCCGGAATCACCGTCGGTGTCATGCTCGTTCCTCAGTCGATGTCCTATGCAAAATTGGCTGGACTTCAACCGATATATGGACTCTACTCTGGTTTTGTGCCCCTATTTGTATATGCCATATTTGGGTCTTCTCGCCAGCTTGCAGTAGGTCCGGTGGCATTGGTTTCTCTCTTGGTCTCTAATGTGCTAGGTAACATAGCTGATTCATCCACTGAGTTATACACAGAGCTGGCAATATTACTGTCCCTTATGGTTGGGATAATGGAGTGCATAATGGGACTCTTGAGGCTTGGATGGCTTATTCGTTTCATTAGCCATTCAGTGATATCTGGCTTTACAACCGCTTCAGCTATTGTCATTGGTTTATCTCAAGCAAAATACTTCTTGGGGTATGATATAGATGGGAGTAGCAAGATCATTCCAGTAGTTAAGAGTATAATAGCTGGAGCAGATAAGTTTTCATGGCCCCCCTTTGTGATGGGATCCATTATGCTTGCGATACTACTTGTCATGAAACACCTGGGAAAGTCGAGGAAGTACTTGCGATTCTTGAGAGCTGCCGGTCCTCTTACAGCAGTAGTTCTGGGGACAGTTTTTGCAAAAATATTTCATCCATCATCAATTTCTTTGGTGGGTGATATACCTCAAGGCCTACCAAAATTTTCTGTTCCAAAATCTTTTGAGTATGCACAGTCCTTAATTCCAACTGCTCTTCTCATAACTGGTGTGGCTATACTGGAATCAGTGGGAATTGCCAAGGCATTAGCAGCGAAAAATGGATACGAGTTGGATTCAAATCAAGAGTTGTTCGGTCTTGGTGTTTCCAATGTTCTTGGTTCATTTTTTTCAGCATACCCCACAACAGGATCCTTTTCAAGGTCAGCTGTAAATCATGAAAGCGGTGCAAAATCTGGTGTATCTGGGATAGTTTTAGGAATTATAATGACCTGTGCACTTTTGTTTCTAACACCATTATTTGAGTACATACCTCAGTGCACCCTTGCTGCCATTGTGATCTCTGCTGTGATAGGTCTGGTAGATTATGATGAGGCCATTTTTTTGTGGCGTGTAGATAAGAAAGATTTTCTTCTTTGGACCATTACTAGCACTACAACATTGTTCCTTGGTATTGAGATTGGCGTCCTTGTTGGGGTTGGGGTTTCACTTGCTTTTGTCATTCATGAGTCAGCAAATCCACATATTGCTGTTTTGGGTCGTTTGCCAGGGACAACTGTTTATAGGAATGTTAAACAGTACCCTGAAGCATATACATATAATGGAATTGTAATCGTTCGTGTTGATGCTCCAATTTATTTTGCAAACACAAGTTACATAAAGGACAGGTAA

Predicted protein sequences of Glyma02g10590

Limit To All Plant Sequences

>Glyma02g10590.1   sequence type=predicted peptide   gene model=Glyma02g10590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEITYASPSFSDLRAAATSSSMPSSARPVRIIPLQHPTATTSSSSPPNAAFSRWTAKLRRMTWMEWIEFFLPCLRWIRIYKWREYFQVDLMAGITVGVMLVPQSMSYAKLAGLQPIYGLYSGFVPLFVYAIFGSSRQLAVGPVALVSLLVSNVLGNIADSSTELYTELAILLSLMVGIMECIMGLLRLGWLIRFISHSVISGFTTASAIVIGLSQAKYFLGYDIDGSSKIIPVVKSIIAGADKFSWPPFVMGSIMLAILLVMKHLGKSRKYLRFLRAAGPLTAVVLGTVFAKIFHPSSISLVGDIPQGLPKFSVPKSFEYAQSLIPTALLITGVAILESVGIAKALAAKNGYELDSNQELFGLGVSNVLGSFFSAYPTTGSFSRSAVNHESGAKSGVSGIVLGIIMTCALLFLTPLFEYIPQCTLAAIVISAVIGLVDYDEAIFLWRVDKKDFLLWTITSTTTLFLGIEIGVLVGVGVSLAFVIHESANPHIAVLGRLPGTTVYRNVKQYPEAYTYNGIVIVRVDAPIYFANTSYIKDRLREYEVDVDCSKRHGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKLRDIQIAISNPSPEVLLTLSRSGLVELIGKEWYFVRVHDAVQVCLQHVQSLKGGSNSPQAPFSSLEDKPSLFARLSKERGEKLSITDLESGNGRPPLPKERDSQLEPLLSKDH*

>Glyma02g10590.2   sequence type=predicted peptide   gene model=Glyma02g10590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEITYASPSFSDLRAAATSSSMPSSARPVRIIPLQHPTATTSSSSPPNAAFSRWTAKLRRMTWMEWIEFFLPCLRWIRIYKWREYFQVDLMAGITVGVMLVPQSMSYAKLAGLQPIYGLYSGFVPLFVYAIFGSSRQLAVGPVALVSLLVSNVLGNIADSSTELYTELAILLSLMVGIMECIMGLLRLGWLIRFISHSVISGFTTASAIVIGLSQAKYFLGYDIDGSSKIIPVVKSIIAGADKFSWPPFVMGSIMLAILLVMKHLGKSRKYLRFLRAAGPLTAVVLGTVFAKIFHPSSISLVGDIPQGLPKFSVPKSFEYAQSLIPTALLITGVAILESVGIAKALAAKNGYELDSNQELFGLGVSNVLGSFFSAYPTTGSFSRSAVNHESGAKSGVSGIVLGIIMTCALLFLTPLFEYIPQCTLAAIVISAVIGLVDYDEAIFLWRVDKKDFLLWTITSTTTLFLGIEIGVLVGVGVSLAFVIHESANPHIAVLGRLPGTTVYRNVKQYPEAYTYNGIVIVRVDAPIYFANTSYIKDR*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain