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Report for Sequence Feature Glyma02g10570

Feature Type:gene_model
Chromosome:Gm02
Start:8451067
stop:8460800
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g10570
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G55260AT Annotation by Michelle Graham. TAIR10: beta-hexosaminidase 1 | chr3:20489317-20492858 FORWARD LENGTH=541 SoyBaseE_val: 0ISS
GO:0005975GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0009505GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004553GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds SoyBaseN/AISS
GO:0004563GO-mf Annotation by Michelle Graham. GO Molecular Function: beta-N-acetylhexosaminidase activity SoyBaseN/AISS
GO:0015929GO-mf Annotation by Michelle Graham. GO Molecular Function: hexosaminidase activity SoyBaseN/AISS
GO:0043169GO-mf Annotation by Michelle Graham. GO Molecular Function: cation binding SoyBaseN/AISS
KOG2499 KOG Beta-N-acetylhexosaminidase JGI ISS
PTHR22600Panther BETA-HEXOSAMINIDASE JGI ISS
PF00728PFAM Glycosyl hydrolase family 20, catalytic domain JGI ISS
PF02838PFAM Glycosyl hydrolase family 20, domain 2 JGI ISS
UniRef100_A7WM73UniRef Annotation by Michelle Graham. Most informative UniRef hit: Beta-N-acetylhexosaminidase n=2 Tax=Arabidopsis thaliana RepID=A7WM73_ARATH SoyBaseE_val: 0ISS
UniRef100_I1JDS6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JDS6_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma02g10570
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g10570
ParalogEvidenceComments
Glyma18g52290 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g10570 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g095200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g10570
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g10570
>Glyma02g10570.1   sequence type=CDS   gene model=Glyma02g10570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTCTCTTGTTCTTCAAACCCACCACCTCTCTTCTCTTTCTCTTCTTCTTCCTCATTATTTCAGTTACCTCACTTACTGTGCCGCCGCGAGGGGGGGCCCCACTCGATAGTGATGATGATATTGATTCCCTCACCTACCTCTGGCCCCTTCCCGCAGAGTACACTTTCGGCGTCGACGCTCTCTCCGTTGACCCCGCCCTCACGCTCTCCGTCGCCGGCAACGGCGGCGGCTCCGCCATTCTCAGAGCCGCCTTCGACCGATACAGAGGGATCGTGTTCAAGCACACCGGTGTCGGGTTTAGTTTCTTCAGAAAGCTGAGGGAACGATTGGTGTCTTCTGTTTCGGCATTCGATGTTGACACTTTGAAAATCACTGTTCGTTCAGACAACGAGGAGCTTCAATTTGGAGTGGATGAAAGCTATACCTTGCTGGTTCCCAAAGCCAAGGAATCTTCCCAAGTCACAATTGAGGCAAATACAGTTTATGGTGCATTACGCGGATTAGAGACATTCAGCCAGTTGTGTTCTTTCGATTATACAACTAAAACAGTAAAAATATACAAGGCACCTTGGTCCATCCAAGATAAACCTAGATTTGCATATCGTGGGCTTATGCTGGATACATCAAGGCACTATTTACCTATTAATGTAATTAAGCAGATTATTGAATCTATGTCCTATGCTAAACTTAATGTTCTACATTGGCACATCATAGATGAACAGTCATTTCCTCTTGAGGTACCTACATATCCAAACTTGTGGAAAGGTTCATATACAAAGTGGGAACGTTATACAGTAGAAGATGCATATGAAATTGTCAACTTTGCCAAAATGAGAGGCATAAATGTGATGGCAGAAGTGGATGTCCCTGGTCATGCAGAATCATGGGGTGCTGGATATCCTGATCTTTGGCCATCACCTTACTGTAGGGAGCCACTAGATGTTTCAAAGAACTTTACTTTTGATGTCATTTCTGGTATTTTGACAGATATGAGAAAGATTTTCCCATTTGAGCTATTTCACTTGGGTGGTGATGAAGTTAATACAGATTGCTGGAGTAGTACTTCTCATGTAAAGGAATGGCTTCAGAGTCACAACATGACCACTAGAGATGCCTATCAATATTTTGTACTGAAGGCCCAAGAGATGGCTGTTTCGAAAAATTGGAGTCCAGTGAACTGGGAGGAAACCTTCAATACGTTTCCATCAAAGCTCCATCCAAACACCATAGTGCACAACTGGTTGGGCCCTGGTGTTTGTCCAAAGGTTGTTGCAAAAGGTTTCAGGTGCATTTACAGTAATCAGGGTGTCTGGTATCTTGACCATCTGGATGTACCTTGGGATGAGGTCTACACTACTGAGCCACTACAGGGAATACATATAGCTTCTGAACAAGAGCTTGTAATTGGAGGAGAAGTTTGCATGTGGGGTGAGACAGCTGATACATCCAATGTTCAGCAGACAATATGGCCTCGAGCTGCTGCAGCTGCAGAACGCTTATGGAGTCAGAGAGATTCTACCTCACAAAATATTACCTTAATTGCATTGCCCCGGTTGCTAAACTTCAGATGTCTATTGAATAGACGAGGGGTTCCAGCTGCTCCTGTCACAAATTATTATGCTAGAAGGGCACCTGTTGGTCCAGGGTCATGTTATGACCAATAA
Predicted protein sequences of Glyma02g10570
>Glyma02g10570.1   sequence type=predicted peptide   gene model=Glyma02g10570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFLLFFKPTTSLLFLFFFLIISVTSLTVPPRGGAPLDSDDDIDSLTYLWPLPAEYTFGVDALSVDPALTLSVAGNGGGSAILRAAFDRYRGIVFKHTGVGFSFFRKLRERLVSSVSAFDVDTLKITVRSDNEELQFGVDESYTLLVPKAKESSQVTIEANTVYGALRGLETFSQLCSFDYTTKTVKIYKAPWSIQDKPRFAYRGLMLDTSRHYLPINVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGSYTKWERYTVEDAYEIVNFAKMRGINVMAEVDVPGHAESWGAGYPDLWPSPYCREPLDVSKNFTFDVISGILTDMRKIFPFELFHLGGDEVNTDCWSSTSHVKEWLQSHNMTTRDAYQYFVLKAQEMAVSKNWSPVNWEETFNTFPSKLHPNTIVHNWLGPGVCPKVVAKGFRCIYSNQGVWYLDHLDVPWDEVYTTEPLQGIHIASEQELVIGGEVCMWGETADTSNVQQTIWPRAAAAAERLWSQRDSTSQNITLIALPRLLNFRCLLNRRGVPAAPVTNYYARRAPVGPGSCYDQ*






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