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Report for Sequence Feature Glyma02g10540

Feature Type:gene_model
Chromosome:Gm02
Start:8427072
stop:8430018
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g10540
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G55330AT Annotation by Michelle Graham. TAIR10: PsbP-like protein 1 | chr3:20514031-20515275 REVERSE LENGTH=230 SoyBaseE_val: 3.00E-94ISS
GO:0006098GO-bp Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt SoyBaseN/AISS
GO:0006364GO-bp Annotation by Michelle Graham. GO Biological Process: rRNA processing SoyBaseN/AISS
GO:0009657GO-bp Annotation by Michelle Graham. GO Biological Process: plastid organization SoyBaseN/AISS
GO:0010103GO-bp Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis SoyBaseN/AISS
GO:0010207GO-bp Annotation by Michelle Graham. GO Biological Process: photosystem II assembly SoyBaseN/AISS
GO:0015979GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis SoyBaseN/AISS
GO:0043085GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009523GO-cc Annotation by Michelle Graham. GO Cellular Compartment: photosystem II SoyBaseN/AISS
GO:0009543GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid lumen SoyBaseN/AISS
GO:0009579GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid SoyBaseN/AISS
GO:0009654GO-cc Annotation by Michelle Graham. GO Cellular Compartment: oxygen evolving complex SoyBaseN/AISS
GO:0019898GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extrinsic to membrane SoyBaseN/AISS
GO:0030095GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast photosystem II SoyBaseN/AISS
GO:0031977GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid lumen SoyBaseN/AISS
GO:0005509GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium ion binding SoyBaseN/AISS
PF01789PFAM PsbP JGI ISS
UniRef100_B9T155UniRef Annotation by Michelle Graham. Most informative UniRef hit: Thylakoid lumenal 25.6 kDa protein, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9T155_RICCO SoyBaseE_val: 6.00E-106ISS
UniRef100_I1JDS1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JDS1_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma02g10540
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g10540
ParalogEvidenceComments
Glyma18g52340 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g10540 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g094900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g10540
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma02g10540
>Glyma02g10540.2   sequence type=transcript   gene model=Glyma02g10540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGAGGGAGTTGTAGATTGTGATGTGGATAAGTGAAACTTCCAAAAAGCGAGTCCTCAACCACATAACATGTCGTTACTTTGTTCTTTGCATTCTCACTCTCACACAACAACAATGATGTCCCTGCTGCAGAATTCCCCAACGCTTCACAACTCCTCTTTCCCTCAGAAGCATGTCACTCGTTCATCTAGAAGAGATGCTATTTCCTTCATTGTCAAAGCAGTCCAAGAACCCTCTGCTTCTTTAACTTCTCAAGATAGACAAAGAAGGCGCCAAGTGATTGCCGTTGGAACCACTGCCCCATTAGTTTTTTTGTTCAACCAACACTCGAACTCTTTTGCTGCAGAAAATAAGAAAGGATTTTTGCCGGTTTTGGACAAGAAAGATGGATATTCATTTCTCTACCCTTTTGGTTGGCAGGAAGTAGTAATTGAAGGTCAAGATAAGGTGTTCAAAGATGTCATTGAACCACTGGAGAATGTCAGTGTAAATGTGATACCAACTGGCAAACAGGATATTACAGAATTTGGGTCCCCTCAAGAGGTTGCCGAAACTCTAATAAAAAAGGTTTTGGCCCCTCCAAACCAGAAAACCAAGATAGTAGAAGCAAAAGAGATGTTGAAGGAAAAAAATACTATCAATTTGAGTTCATTGCTCAGGCTCCGAACTATACTCGTCATGCTCTCAGCACAGTCTCCATTGGCAATGGTAAGTTTTACACCTTGACGACAGGAGCAAACGAAAGAAGATGGGTGAAGATGAAAGACAGGCTGCAGACGGTCATAGAATCCTTCAAAATTTTCGACGTTTGATAATGATCATTACTATTACCACCATATTAGAGATATTAAACTCTTCAGCGAGAATGTTCATTTGAATTTTGAGCTTTATAGTATCAAGTTTTATCTGTTTTTTTATTATAACTTTCCAAATATATGTACAATAAATGAGTAAATGTATTGTATAAAAAAGAAGGGGGGGATTTCTTTTTTTTTTTTAACACAAGATAT

>Glyma02g10540.3   sequence type=transcript   gene model=Glyma02g10540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGAGGGAGTTGTAGATTGTGATGTGGATAAGTGAAACTTCCAAAAAGCGAGTCCTCAACCACATAACATGTCGTTACTTTGTTCTTTGCATTCTCACTCTCACACAACAACAATGATGTCCCTGCTGCAGAATTCCCCAACGCTTCACAACTCCTCTTTCCCTCAGAAGCATGTCACTCGTTCATCTAGAAGAGATGCTATTTCCTTCATTGTCAAAGCAGTCCAAGAACCCTCTGCTTCTTTAACTTCTCAAGGCTTGTTCTTCTTTCATTTTCAACTTGTACCTGTCATTATCTTATAACAAGTTACATGTGATGTTGGGGTGTCATGTGGGGCACAGAAAATCCTAATACGAATTTCATGTTATTCGAGGTGAAATCTTAATAGTTTTTCAATTTTGATTAGCAATCCCTATACCTTTGTAAACAAATTTATTAGAGAAGTATCTGACAAACAATTTTAAATTCTCCTACAACATCCTCTTATTGGTCCTCCTATTTGCTTTGTATGGTAGTAAGTAAGTATTGAATTTATTTTTTTTTTGTTTCCTAGACATTAATGTTGAATTGCTATCATGAACTGGGACTATCAATTTTGTTTTTAATCCTTTGTCATACCTTGGCAGATAGACAAAGAAGGCGCCAAGTGATTGCCGTTGGAACCACTGCCCCATTAGTTTTTTTGTTCAACCAACACTCGAACTCTTTTGCTGCAGAAAATAAGAAAGGATTTTTGCCGGTTTTGGACAAGAAAGATGGATATTCATTTCTCTACCCTTTTGGTTGGCAGGAAGTAGTAATTGAAGGTCAAGATAAGGTGTTCAAAGATGTCATTGAACCACTGGAGAATGTCAGTGTAAATGTGATACCAACTGGCAAACAGGATATTACAGAATTTGGGTCCCCTCAAGAGGTTGCCGAAACTCTAATAAAAAAGGTTTTGGCCCCTCCAAACCAGAAAACCAAGATAGTAGAAGCAAAAGAGCTAGATGTTGAAGGAAAAAAATACTATCAATTTGAGTTCATTGCTCAGGCTCCGAACTATACTCGTCATGCTCTCAGCACAGTCTCCATTGGCAATGGTAAGTTTTACACCTTGACGACAGGAGCAAACGAAAGAAGATGGGTGAAGATGAAAGACAGGCTGCAGACGGTCATAGAATCCTTCAAAATTTTCGACGTTTGATAATGATCATTACTATTACCACCATATTAGAGATATTAAACTCTTCAGCGAGAATGTTCATTTGAATTTTGAGCTTTATAGTATCAAGTTTTATCTGTTTTTTTATTATAACTTTCCAAATATATGTACAATAAATGAGTAAATGTATTGTATAAAAAAGAAGGGGGGGATTTCTTTTTTTTTTTTAACACAAGATAT
Coding sequences of Glyma02g10540
>Glyma02g10540.1   sequence type=CDS   gene model=Glyma02g10540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGTTACTTTGTTCTTTGCATTCTCACTCTCACACAACAACAATGATGTCCCTGCTGCAGAATTCCCCAACGCTTCACAACTCCTCTTTCCCTCAGAAGCATGTCACTCGTTCATCTAGAAGAGATGCTATTTCCTTCATTGTCAAAGCAGTCCAAGAACCCTCTGCTTCTTTAACTTCTCAAGATAGACAAAGAAGGCGCCAAGTGATTGCCGTTGGAACCACTGCCCCATTAGTTTTTTTGTTCAACCAACACTCGAACTCTTTTGCTGCAGAAAATAAGAAAGGATTTTTGCCGGTTTTGGACAAGAAAGATGGATATTCATTTCTCTACCCTTTTGGTTGGCAGGAAGTAGTAATTGAAGGTCAAGATAAGGTGTTCAAAGATGTCATTGAACCACTGGAGAATGTCAGTGTAAATGTGATACCAACTGGCAAACAGGATATTACAGAATTTGGGTCCCCTCAAGAGGTTGCCGAAACTCTAATAAAAAAGGTTTTGGCCCCTCCAAACCAGAAAACCAAGATAGTAGAAGCAAAAGAGCTAGATGTTGAAGGAAAAAAATACTATCAATTTGAGTTCATTGCTCAGGCTCCGAACTATACTCGTCATGCTCTCAGCACAGTCTCCATTGGCAATGGTAAGTTTTACACCTTGACGACAGGAGCAAACGAAAGAAGATGGGTGAAGATGAAAGACAGGCTGCAGACGGTCATAGAATCCTTCAAAATTTTCGACGTTTGA

>Glyma02g10540.2   sequence type=CDS   gene model=Glyma02g10540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGTTACTTTGTTCTTTGCATTCTCACTCTCACACAACAACAATGATGTCCCTGCTGCAGAATTCCCCAACGCTTCACAACTCCTCTTTCCCTCAGAAGCATGTCACTCGTTCATCTAGAAGAGATGCTATTTCCTTCATTGTCAAAGCAGTCCAAGAACCCTCTGCTTCTTTAACTTCTCAAGATAGACAAAGAAGGCGCCAAGTGATTGCCGTTGGAACCACTGCCCCATTAGTTTTTTTGTTCAACCAACACTCGAACTCTTTTGCTGCAGAAAATAAGAAAGGATTTTTGCCGGTTTTGGACAAGAAAGATGGATATTCATTTCTCTACCCTTTTGGTTGGCAGGAAGTAGTAATTGAAGGTCAAGATAAGGTGTTCAAAGATGTCATTGAACCACTGGAGAATGTCAGTGTAAATGTGATACCAACTGGCAAACAGGATATTACAGAATTTGGGTCCCCTCAAGAGGTTGCCGAAACTCTAATAAAAAAGGTTTTGGCCCCTCCAAACCAGAAAACCAAGATAGTAGAAGCAAAAGAGATGTTGAAGGAAAAAAATACTATCAATTTGAGTTCATTGCTCAGGCTCCGAACTATACTCGTCATGCTCTCAGCACAGTCTCCATTGGCAATGGTAAGTTTTACACCTTGA

>Glyma02g10540.3   sequence type=CDS   gene model=Glyma02g10540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGAATTGCTATCATGAACTGGGACTATCAATTTTGTTTTTAATCCTTTGTCATACCTTGGCAGATAGACAAAGAAGGCGCCAAGTGATTGCCGTTGGAACCACTGCCCCATTAGTTTTTTTGTTCAACCAACACTCGAACTCTTTTGCTGCAGAAAATAAGAAAGGATTTTTGCCGGTTTTGGACAAGAAAGATGGATATTCATTTCTCTACCCTTTTGGTTGGCAGGAAGTAGTAATTGAAGGTCAAGATAAGGTGTTCAAAGATGTCATTGAACCACTGGAGAATGTCAGTGTAAATGTGATACCAACTGGCAAACAGGATATTACAGAATTTGGGTCCCCTCAAGAGGTTGCCGAAACTCTAATAAAAAAGGTTTTGGCCCCTCCAAACCAGAAAACCAAGATAGTAGAAGCAAAAGAGCTAGATGTTGAAGGAAAAAAATACTATCAATTTGAGTTCATTGCTCAGGCTCCGAACTATACTCGTCATGCTCTCAGCACAGTCTCCATTGGCAATGGTAAGTTTTACACCTTGACGACAGGAGCAAACGAAAGAAGATGGGTGAAGATGAAAGACAGGCTGCAGACGGTCATAGAATCCTTCAAAATTTTCGACGTTTGA
Predicted protein sequences of Glyma02g10540
>Glyma02g10540.1   sequence type=predicted peptide   gene model=Glyma02g10540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLLCSLHSHSHTTTMMSLLQNSPTLHNSSFPQKHVTRSSRRDAISFIVKAVQEPSASLTSQDRQRRRQVIAVGTTAPLVFLFNQHSNSFAAENKKGFLPVLDKKDGYSFLYPFGWQEVVIEGQDKVFKDVIEPLENVSVNVIPTGKQDITEFGSPQEVAETLIKKVLAPPNQKTKIVEAKELDVEGKKYYQFEFIAQAPNYTRHALSTVSIGNGKFYTLTTGANERRWVKMKDRLQTVIESFKIFDV*

>Glyma02g10540.2   sequence type=predicted peptide   gene model=Glyma02g10540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLLCSLHSHSHTTTMMSLLQNSPTLHNSSFPQKHVTRSSRRDAISFIVKAVQEPSASLTSQDRQRRRQVIAVGTTAPLVFLFNQHSNSFAAENKKGFLPVLDKKDGYSFLYPFGWQEVVIEGQDKVFKDVIEPLENVSVNVIPTGKQDITEFGSPQEVAETLIKKVLAPPNQKTKIVEAKEMLKEKNTINLSSLLRLRTILVMLSAQSPLAMVSFTP*

>Glyma02g10540.3   sequence type=predicted peptide   gene model=Glyma02g10540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLNCYHELGLSILFLILCHTLADRQRRRQVIAVGTTAPLVFLFNQHSNSFAAENKKGFLPVLDKKDGYSFLYPFGWQEVVIEGQDKVFKDVIEPLENVSVNVIPTGKQDITEFGSPQEVAETLIKKVLAPPNQKTKIVEAKELDVEGKKYYQFEFIAQAPNYTRHALSTVSIGNGKFYTLTTGANERRWVKMKDRLQTVIESFKIFDV*






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