Glyma02g10470 - SoyBase

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Report for Sequence Feature Glyma02g10470

Feature Type:	gene_model
Chromosome:	Gm02
Start:	8359115
stop:	8366444
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g10470

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G55410	AT	Annotation by Michelle Graham. TAIR10: 2-oxoglutarate dehydrogenase, E1 component \| chr3:20541897-20545728 FORWARD LENGTH=1017	SoyBase	E_val: 0	ISS
GO:0006099	GO-bp	Annotation by Michelle Graham. GO Biological Process: tricarboxylic acid cycle	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0004591	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxoglutarate dehydrogenase (succinyl-transferring) activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0016624	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	SoyBase	N/A	ISS
GO:0030976	GO-mf	Annotation by Michelle Graham. GO Molecular Function: thiamine pyrophosphate binding	SoyBase	N/A	ISS
GO:0050897	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cobalt ion binding	SoyBase	N/A	ISS
KOG0450	KOG	2-oxoglutarate dehydrogenase, E1 subunit	JGI		ISS
PTHR23152	Panther	2-OXOGLUTARATE DEHYDROGENASE	JGI		ISS
PF00676	PFAM	Dehydrogenase E1 component	JGI		ISS
PF02779	PFAM	Transketolase, pyrimidine binding domain	JGI		ISS
UniRef100_G7KVS0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Oxoglutarate dehydrogenase-like protein n=1 Tax=Medicago truncatula RepID=G7KVS0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JDR2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JDR2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g10470

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g10470

Paralog	Evidence	Comments
Glyma18g52430	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g10470 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g094300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g10470

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g10470

Limit To All Plant Sequences

>Glyma02g10470.1   sequence type=CDS   gene model=Glyma02g10470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATGGTTTAGAGCTGGAACTAGCATAGCAAAGCATGCAATTAGGAGAACCCTTTCCAAGGGTGGATCCACATACCTTGTGTCAAGGGCAAGGTTCCTTCCATCGATACCATCATCATCGTCATCACCATATAGCAGAAGCTTCCACAGCACGGTTTTCAAGGAACAAGCTGCACCTGTTCCACGTGCGGTTCCTCTTTCAAAGTTAACAGATAGTTTCTTAGATGGCACAAGCAGTGTGTATTTGGAAGAGCTTCAGAGGGCTTGGGAGGCTGATCCCAACAGTGTGGATGAGTCATGGGACAATTTCTTCAGGAACTTTGTGGGGCAGGCAACAACCTCACCTGGAATTTCTGGTCAGACAATTCAGGAAAGTATGAGGTTGTTGTTGCTGGTGAGGGCGTACCAGGTTAATGGTCACATGAAGGCCAAGTTGGATCCCTTGAATCTGGAACCAAGGCAAATCTCTGAGGATTTGGACCCTGCACTTTATGGCTTCACTGAGGCTGATCTTGATAGAGAGTTCTTCTTAGGGGTGTGGAGGATGGCTGGTTTCTTGTCCGAGAATCGCCCCGTGCAAACCCTTAGATCCATTTTGACAAGGCTTGAGCAGGCCTATTGTGGAAGCATTGGATATGAGTATATGCACATTGCAGATCGTCATAAGTGTAATTGGCTTAGGGACAAGATTGAGACCCCCACCCCTACACAGTTTAATAGGGAGAGGCGTGAGGCTATATTTGATAGGCTTGCTTGGAGTTCCTTGTTTGAGAACTTCTTGGCCACCAAGTGGACCTCTGCAAAGAGGTTTGGTCTTGAGGGTGGAGAGACTCTTATTCCCGGAATGAAGGAAATGTTTGATAGGGCATCTGATCTTGGGGTTGAGAGCATAGTTATAGGAATGGCACATCGAGGGAGGCTGAATGTTTTGGGGAATGTGGTAAGGAAGCCCCTGCGGCAGATTTTCTGCGAGTTTAGCGGTGGTCTTCAGCCTGAGGGGGAAGTTGGACTCTACACTGGAACTGGAGATGTTAAGTATCATTTGGGGACATCGTATGATCGCCCTACTAGGGGTGGCAAGAGGATTCATTTGTCTTTGGTGGCAAATCCTAGTCACTTGGAAGCTGTCAATCCGCTTGTTATTGGGAAAACTCGAGCCAAGCAGTATTACGCAAATGACGTGGATAGAACGAAGAACATGGGTGTGTTGATTCATGGAGATGGAAGTTTTGCTGGACAGGGTGTGGTCTATGAAACCCTGCATTTAAGTGCTCTTCCAAATTACACTACTGGTGGGACGATTCACATCGTGTTTAACAATCAGGTTGCATTTACAACTGATCCGACTTCTGGCAGGTCTTCACAATATTGCACTGATGTTGCCAAGGCTTTGGATGCTCCCATCTTTCACGTGAATGGTGATGATGTTGAAGCAGTTGTTCATGCCTGTGAACTTGCTGCAGAGTGGCGCCAGACTTTCCACTCTGATGTGGTTGTCGACTTGGTGTGTTACCGTCGATTTGGCCACAATGAGATTGATGAACCATCTTTCACTCAGCCTAAAATGTACAAGGTAATCCGAAGCCATCCATCAACTCTTGAGATCTATGAGAAGAACCTTTTGGAATCAGGGGAGTTGACACAAGAAGAAATTGATAGGATCCACAAGAAGGTCACATCAATTCTAAATGAAGAATTTTTGGCTAGCAAAGAATACATTCCAAAAAGAAGAGATTGGCTTTCAGCATATTGGCTTGGTTTCAAGTCACCTGAACAGCTTTCACGTATCCGAAACACTGGTGTGAAACCAGAGATCTTGAAAACTGTTGGAAAAGCAATCACAACCATCCCTGAAAATTTCACACCTCATAGAGCAGTGAAGAGGATTTATGAACAACGGGCCCAAATGATTGAAACTGGGGAAGATATTGACTGGGGATTTGCAGAGGCGCTTGCTTATGCTACCTTGCTTATTGAAGGTAACCATGTTCGATTAAGTGGTCAGGATGTTGAAAGAGGAACTTTTAGTCACCGCCATGCTGTAGTTCACGATCAGACAACAGGGGAGAAATATTGTCCCCTGGACCATGTTATAATGAACCAAGACGAAGAGATGTTTACTGTTAGCAATAGTTCACTTTCTGAGTTTGGTGTTCTTGGATTTGAATTGGGTTACTCAATGGAAAATCCCAATTCATTGATAATTTGGGAGGCTCAGTTTGGTGATTTTGCTAATGGTGCTCATGTGATATTTGACAATTTTTTGGCTTCTGGTGAGGCTAAGTGGCTTCGTCAGACTGGGCTTGTTGTGTTACTTCCTCATGGTTATGATGGCCAGGGCCCAGAGCATTCAAGTGCAAGATTGGAACGCTTTCTTCAGATGGCTGATGACAACCCTCATGTTATCCCTGAGATGGATCCAACCCTCCGGAAGCAGATTCAGGAGTGTAATTTGCAGATTGTGAATGTCACAACTCCTGCTAATTTTTTCCATGTTCTAAGGAGGCAGGTACATAGAGATTTTCGCAAACCTCTCATTGTAATGTCCCCTAAGAACCTGCTTCGTAGCAAGGCTTGCAGATCAAATTTATCTGAGTTTGATGATGTCCAAGGCCACCCAGGCTTTGACAAACAGGGAACCAGATTCAAGCGCCTCATAAAAGACCAAAATGCCCACAAAGATGTTGAGGAGGGTATTAGACGTTTAGTACTTTGCTCTGGAAAAGTTTACTATGAACTTGATGAACAACGAACAAAGGTTGATGCAAATGATGTTGCAATATGTAGGGTGGAACAGCTTTGTCCTTTCCCTTATGACCTTGTCCAACGAGAGCTTAAACGATATCCAAATGCTGAGGTTGTTTGGTGTCAAGAAGAGCCAATGAACATGGGTGGATACACTTATGTTTTACCCCGACTTATATCTTCAATGAAAGCTGTGAATAGGGGAGGTTACGACGATGTCAAATATATTGGTCGTGCTCCATCCGCGGCCACAGCCACTGGCTTCCTCAAGGTTCACCAGAAGGAGCAGACTGAGATTGCTGAAAAAGCCGTTCAACAAGAACCAATCGACTTCCCATTTTGA

Predicted protein sequences of Glyma02g10470

Limit To All Plant Sequences

>Glyma02g10470.1   sequence type=predicted peptide   gene model=Glyma02g10470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAWFRAGTSIAKHAIRRTLSKGGSTYLVSRARFLPSIPSSSSSPYSRSFHSTVFKEQAAPVPRAVPLSKLTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNFVGQATTSPGISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLNLEPRQISEDLDPALYGFTEADLDREFFLGVWRMAGFLSENRPVQTLRSILTRLEQAYCGSIGYEYMHIADRHKCNWLRDKIETPTPTQFNRERREAIFDRLAWSSLFENFLATKWTSAKRFGLEGGETLIPGMKEMFDRASDLGVESIVIGMAHRGRLNVLGNVVRKPLRQIFCEFSGGLQPEGEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVNPLVIGKTRAKQYYANDVDRTKNMGVLIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVFNNQVAFTTDPTSGRSSQYCTDVAKALDAPIFHVNGDDVEAVVHACELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKVIRSHPSTLEIYEKNLLESGELTQEEIDRIHKKVTSILNEEFLASKEYIPKRRDWLSAYWLGFKSPEQLSRIRNTGVKPEILKTVGKAITTIPENFTPHRAVKRIYEQRAQMIETGEDIDWGFAEALAYATLLIEGNHVRLSGQDVERGTFSHRHAVVHDQTTGEKYCPLDHVIMNQDEEMFTVSNSSLSEFGVLGFELGYSMENPNSLIIWEAQFGDFANGAHVIFDNFLASGEAKWLRQTGLVVLLPHGYDGQGPEHSSARLERFLQMADDNPHVIPEMDPTLRKQIQECNLQIVNVTTPANFFHVLRRQVHRDFRKPLIVMSPKNLLRSKACRSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNAHKDVEEGIRRLVLCSGKVYYELDEQRTKVDANDVAICRVEQLCPFPYDLVQRELKRYPNAEVVWCQEEPMNMGGYTYVLPRLISSMKAVNRGGYDDVKYIGRAPSAATATGFLKVHQKEQTEIAEKAVQQEPIDFPF*

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