Glyma02g10410 - SoyBase

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Report for Sequence Feature Glyma02g10410

Feature Type:	gene_model
Chromosome:	Gm02
Start:	8313598
stop:	8318459
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g10410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G35550	AT	Annotation by Michelle Graham. TAIR10: WUSCHEL related homeobox 13 \| chr4:16875814-16877167 REVERSE LENGTH=268	SoyBase	E_val: 3.00E-72	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
KOG0484	KOG	Transcription factor PHOX2/ARIX, contains HOX domain	JGI		ISS
PTHR24329	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24329:SF295	Panther		JGI		ISS
PF00046	PFAM	Homeobox domain	JGI		ISS
UniRef100_I1JDQ8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JDQ8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9ZRZ4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: HB2 homeodomain protein (Fragment) n=2 Tax=Populus RepID=Q9ZRZ4_9ROSI	SoyBase	E_val: 8.00E-88	ISS

Expression Patterns of Glyma02g10410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g10410

Paralog	Evidence	Comments
Glyma18g52491	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g10410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g093900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g10410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g10410

Limit To All Plant Sequences

>Glyma02g10410.2   sequence type=transcript   gene model=Glyma02g10410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCGTATATCAAGGATTTTGTTAATTCGCACCTTTACGGGACCATTCAACCCACAGGCAACACCCTCTTTCTGAATTACCTTCAAACAACACAATCGCTCTCTTCGATTTCTAGGGTTTTGCTATTGCTTTGCATCCGTTCCCCCTTCTCACAAAAACAACGCGTTTTCTCTTCCCCTTCGTATCTATTCTTTGCGTTTGTTTTTGGTTGATTGAAGGCATTCACAGCGTAATTCGTTGCTGCATTTTAATCGATTTATCCAACCAATGGTGAACGCGATGGAGTGGCAGAAGCAGCGTTGTTGGCAACCAAACAGAAACGCGGAAATGATGTGCGTGAAAGTGATGACCGACGAACAGCTCGAGATTCTGCGCAAACAGATTGCGGTTTACGCAACAATCTGCGAACAACTCATCGAGATGCACAAAAACATCTCTGCACACCAAGATCTCGCAGGTATTAGGCTGGGGAATATGTATTGTGATCCATTGTTGGGGTCTGGTGGTCTCAAAATAGCTTCAAGGCAGCGGTGGACTCCAACTGCTATGCAGCTTCAGATTCTGGAGCGAATATTTGATCAAGGGATTGGGACTCCCACCAAGGAAAAGATCAAGGAGATCACTAATGAGCTCAGCCAGCATGGTCAGATTTCTGAGACCAATGTGTATAATTGGTTCCAGAACAGGCGGGCTCGCTCCAAAAGAAAGCAGCAGAATGTGGCGCCTAGTGCTAATGCTGAATCAGAAGTGGAGACTGAGGTTGATTCTAAGGATAAGAAGACAAAGCCGGACGAATTTCAGGCCCCTCCTAGCGTTTCTGCTGGGCCTGCTGATAATTTAGGCTTCCAGAACCATGATAGTTTGCAGTACTTGAATCCAGAATCCAACAAACCAGATTCTGTCTTCCCGTCTGATGGGACCAGAAATTTTCATCATGTGCCTGCTTTTGATGGGCTGCTATCAAACTCAAGGAGCAACTATCTTACTGGAAAACTGGAAACACCTGAGAACTACGAATTATACCAGCCAGCAGGTGACTACAACATTGCAGGTTGACATTCAATATTATTCTGATGACTGTGATTAGCTGTAAAGAATTGCTGGTGTGGTTTTGGGCTTGTGTTGATGAGAAAAATTGAACCAATTGAAACGTGAAACTTATAGTTTGTAGTATATAGATACAATGATCTTTTATGTGGTAGGTGGACATTTTACTTGATAATGGAATATAATCATGAGTTCATATTGATATTGTGAAGTTGGCTTTTTTTGT

>Glyma02g10410.3   sequence type=transcript   gene model=Glyma02g10410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCGTATATCAAGGATTTTGTTAATTCGCACCTTTACGGGACCATTCAACCCACAGGCAACACCCTCTTTCTGAATTACCTTCAAACAACACAATCGCTCTCTTCGATTTCTAGGGTTTTGCTATTGCTTTGCATCCGTTCCCCCTTCTCACAAAAACAACGCGTTTTCTCTTCCCCTTCGTATCTATTCTTTGCGTTTGTTTTTGGTTGATTGAAGGCATTCACAGCGTAATTCGTTGCTGCATTTTAATCGATTTATCCAACCAATGGTGAACGCGATGGAGTGGCAGAAGCAGCGTTGTTGGCAACCAAACAGAAACGCGGAAATGATGTGCGTGAAAGTGATGACCGACGAACAGCTCGAGATTCTGCGCAAACAGATTGCGGTTTACGCAACAATCTGCGAACAACTCATCGAGATGCACAAAAACATCTCTGCACACCAAGATCTCGCAGGTATTAGGCTGGGGAATATGTATTGTGATCCATTGTTGGGGTCTGGTGGTCTCAAAATAGCTTCAAGGCAGCGGTGGACTCCAACTGCTATGCAGCTTCAGATTCTGGAGCGAATATTTGATCAAGGGATTGGGACTCCCACCAAGGAAAAGATCAAGGAGATCACTAATGAGCTCAGCCAGCATGGTCAGATTTCTGAGACCAATGTGTATAATTGGTTCCAGAACAGGCGGGCTCGCTCCAAAAGAAAGCAGCAGAATGTGGCGCCTAGTGCTAATGCTGAATCAGAAGTGGAGACTGAGGTTGATTCTAAGGATAAGAAGACAAAGCCGGACGAATTTCAGGCCCCTCCTAGCGTTTCTGCTGGGCCTGCTGATAATTTAGGCTTCCAGAACCATGATAGTTTGCAGTACTTGAATCCAGAATCCAACAAACCAGATTCTGTCTTCCCGTCTGATGGGACCAGAAATTTTCATCATGTGCCTGCTTTTGATGGGCTGCTATCAAACTCAAGGAGCAACTATCTTACTGGAAAACTGGAAACACCTGAGAACTACGAATTATACCAGCCAGCAGGTGACTACAACATTGCAGGTCAACCTCCAATTTGTCCGCACATTCCTGACGTGACACCAGCTGTTAAGAAACAAAATGATCAGAGACGAGCAATTTAGAGAGAAAGCAATTGTACAGCATGATAATTAATCATCAACCTGAGTATGGGGATCATTAATCGTGCTAAAGTAAGTGAAGCTCAGCATCTGAAACAAAGTCTACAATCCCAGAACAAAATAAGAGTATCAAATATGTACCCGGATTTGTGCTTGAAGAAGCTTGATATAAAGAGAAGCCTCCTGAAGAACTGATGCGGTGTCAGTCTGCAGGATATTCAGAAAGCCAAGGCCACACTTTCTTAAAGGTGTTTATTATGCTAGTAAGAAATGAAGGATCTAGTTTTTGTCCATTAGGGGTTAGCAATGATGACTCACCTTGCCAAAAGGTGAAACCAACTTTTGTAGAGTTGTAATTTTATTGCTAAGCTTCTGATTTGTCATCATAGGCACATGCAACTGAAGGCAAAAAAAGGGGCATTTTTTTAGGCTTACGGTTAAAATGAATTACCTAGTGCCTAATTTAATCAGCAAAACGAAAAAAAAGTAACTACTATTATCATAGTTTACAACACTAAATTCTATTCATAATAATTATGTACTAGTCTTACTCTTTGATAAAATTAAGTTTCTTTTCTCCCTTCTGAG

Coding sequences of Glyma02g10410

Limit To All Plant Sequences

>Glyma02g10410.1   sequence type=CDS   gene model=Glyma02g10410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAACGCGATGGAGTGGCAGAAGCAGCGTTGTTGGCAACCAAACAGAAACGCGGAAATGATGTGCGTGAAAGTGATGACCGACGAACAGCTCGAGATTCTGCGCAAACAGATTGCGGTTTACGCAACAATCTGCGAACAACTCATCGAGATGCACAAAAACATCTCTGCACACCAAGATCTCGCAGGTATTAGGCTGGGGAATATGTATTGTGATCCATTGTTGGGGTCTGGTGGTCTCAAAATAGCTTCAAGGCAGCGGTGGACTCCAACTGCTATGCAGCTTCAGATTCTGGAGCGAATATTTGATCAAGGGATTGGGACTCCCACCAAGGAAAAGATCAAGGAGATCACTAATGAGCTCAGCCAGCATGGTCAGATTTCTGAGACCAATGTGTATAATTGGTTCCAGAACAGGCGGGCTCGCTCCAAAAGAAAGCAGCAGAATGTGGCGCCTAGTGCTAATGCTGAATCAGAAGTGGAGACTGAGGTTGATTCTAAGGATAAGAAGACAAAGCCGGACGAATTTCAGGCCCCTCCTAGCGTTTCTGCTGGGCCTGCTGATAATTTAGGCTTCCAGAACCATGATAGTTTGCAGTACTTGAATCCAGAATCCAACAAACCAGATTCTGTCTTCCCGTCTGATGGGACCAGAAATTTTCATCATGTGCCTGCTTTTGATGGGCTGCTATCAAACTCAAGGAGCAACTATCTTACTGGAAAACTGGAAACACCTGAGAACTACGAATTATACCAGCCAGCAGGTGACTACAACATTGCAGGTTGA

>Glyma02g10410.2   sequence type=CDS   gene model=Glyma02g10410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAACGCGATGGAGTGGCAGAAGCAGCGTTGTTGGCAACCAAACAGAAACGCGGAAATGATGTGCGTGAAAGTGATGACCGACGAACAGCTCGAGATTCTGCGCAAACAGATTGCGGTTTACGCAACAATCTGCGAACAACTCATCGAGATGCACAAAAACATCTCTGCACACCAAGATCTCGCAGGTATTAGGCTGGGGAATATGTATTGTGATCCATTGTTGGGGTCTGGTGGTCTCAAAATAGCTTCAAGGCAGCGGTGGACTCCAACTGCTATGCAGCTTCAGATTCTGGAGCGAATATTTGATCAAGGGATTGGGACTCCCACCAAGGAAAAGATCAAGGAGATCACTAATGAGCTCAGCCAGCATGGTCAGATTTCTGAGACCAATGTGTATAATTGGTTCCAGAACAGGCGGGCTCGCTCCAAAAGAAAGCAGCAGAATGTGGCGCCTAGTGCTAATGCTGAATCAGAAGTGGAGACTGAGGTTGATTCTAAGGATAAGAAGACAAAGCCGGACGAATTTCAGGCCCCTCCTAGCGTTTCTGCTGGGCCTGCTGATAATTTAGGCTTCCAGAACCATGATAGTTTGCAGTACTTGAATCCAGAATCCAACAAACCAGATTCTGTCTTCCCGTCTGATGGGACCAGAAATTTTCATCATGTGCCTGCTTTTGATGGGCTGCTATCAAACTCAAGGAGCAACTATCTTACTGGAAAACTGGAAACACCTGAGAACTACGAATTATACCAGCCAGCAGGTGACTACAACATTGCAGGTTGA

>Glyma02g10410.3   sequence type=CDS   gene model=Glyma02g10410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAACGCGATGGAGTGGCAGAAGCAGCGTTGTTGGCAACCAAACAGAAACGCGGAAATGATGTGCGTGAAAGTGATGACCGACGAACAGCTCGAGATTCTGCGCAAACAGATTGCGGTTTACGCAACAATCTGCGAACAACTCATCGAGATGCACAAAAACATCTCTGCACACCAAGATCTCGCAGGTATTAGGCTGGGGAATATGTATTGTGATCCATTGTTGGGGTCTGGTGGTCTCAAAATAGCTTCAAGGCAGCGGTGGACTCCAACTGCTATGCAGCTTCAGATTCTGGAGCGAATATTTGATCAAGGGATTGGGACTCCCACCAAGGAAAAGATCAAGGAGATCACTAATGAGCTCAGCCAGCATGGTCAGATTTCTGAGACCAATGTGTATAATTGGTTCCAGAACAGGCGGGCTCGCTCCAAAAGAAAGCAGCAGAATGTGGCGCCTAGTGCTAATGCTGAATCAGAAGTGGAGACTGAGGTTGATTCTAAGGATAAGAAGACAAAGCCGGACGAATTTCAGGCCCCTCCTAGCGTTTCTGCTGGGCCTGCTGATAATTTAGGCTTCCAGAACCATGATAGTTTGCAGTACTTGAATCCAGAATCCAACAAACCAGATTCTGTCTTCCCGTCTGATGGGACCAGAAATTTTCATCATGTGCCTGCTTTTGATGGGCTGCTATCAAACTCAAGGAGCAACTATCTTACTGGAAAACTGGAAACACCTGAGAACTACGAATTATACCAGCCAGCAGGTGACTACAACATTGCAGGTCAACCTCCAATTTGTCCGCACATTCCTGACGTGACACCAGCTGTTAAGAAACAAAATGATCAGAGACGAGCAATTTAG

Predicted protein sequences of Glyma02g10410

Limit To All Plant Sequences

>Glyma02g10410.1   sequence type=predicted peptide   gene model=Glyma02g10410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVNAMEWQKQRCWQPNRNAEMMCVKVMTDEQLEILRKQIAVYATICEQLIEMHKNISAHQDLAGIRLGNMYCDPLLGSGGLKIASRQRWTPTAMQLQILERIFDQGIGTPTKEKIKEITNELSQHGQISETNVYNWFQNRRARSKRKQQNVAPSANAESEVETEVDSKDKKTKPDEFQAPPSVSAGPADNLGFQNHDSLQYLNPESNKPDSVFPSDGTRNFHHVPAFDGLLSNSRSNYLTGKLETPENYELYQPAGDYNIAG*

>Glyma02g10410.2   sequence type=predicted peptide   gene model=Glyma02g10410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVNAMEWQKQRCWQPNRNAEMMCVKVMTDEQLEILRKQIAVYATICEQLIEMHKNISAHQDLAGIRLGNMYCDPLLGSGGLKIASRQRWTPTAMQLQILERIFDQGIGTPTKEKIKEITNELSQHGQISETNVYNWFQNRRARSKRKQQNVAPSANAESEVETEVDSKDKKTKPDEFQAPPSVSAGPADNLGFQNHDSLQYLNPESNKPDSVFPSDGTRNFHHVPAFDGLLSNSRSNYLTGKLETPENYELYQPAGDYNIAG*

>Glyma02g10410.3   sequence type=predicted peptide   gene model=Glyma02g10410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVNAMEWQKQRCWQPNRNAEMMCVKVMTDEQLEILRKQIAVYATICEQLIEMHKNISAHQDLAGIRLGNMYCDPLLGSGGLKIASRQRWTPTAMQLQILERIFDQGIGTPTKEKIKEITNELSQHGQISETNVYNWFQNRRARSKRKQQNVAPSANAESEVETEVDSKDKKTKPDEFQAPPSVSAGPADNLGFQNHDSLQYLNPESNKPDSVFPSDGTRNFHHVPAFDGLLSNSRSNYLTGKLETPENYELYQPAGDYNIAGQPPICPHIPDVTPAVKKQNDQRRAI*

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