Report for Sequence Feature Glyma02g10380
Feature Type: gene_model
Chromosome: Gm02
Start: 8280065
stop: 8282461
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g10380
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G02530 AT
Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:564332-565776 REVERSE LENGTH=292
SoyBase E_val: 3.00E-42 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005575 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cellular component
SoyBase N/A ISS
GO:0000166 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotide binding
SoyBase N/A ISS
GO:0003676 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding
SoyBase N/A ISS
KOG0533
KOG
RRM motif-containing protein
JGI ISS
PTHR19965 Panther
RNA AND EXPORT FACTOR BINDING PROTEIN
JGI ISS
PTHR19965:SF8 Panther
RNA AND EXPORT FACTOR BINDING PROTEIN
JGI ISS
PF00076 PFAM
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
JGI ISS
UniRef100_G7KWS3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: THO complex subunit n=1 Tax=Medicago truncatula RepID=G7KWS3_MEDTR
SoyBase E_val: 1.00E-53 ISS
UniRef100_I1JDQ5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JDQ5_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma02g10380
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma02g10380
Paralog Evidence Comments
Glyma18g52530 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma02g10380 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.02g093700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma02g10380
Coding sequences of Glyma02g10380
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g10380.1 sequence type=CDS gene model=Glyma02g10380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCCGGCGGCATCGACATGTCCCTCGACGACATTAAGAAGCGTTCAGCCGCCGCCGTGGCTTCTCGCCGCCGATTCACGGTTGTTCACAACCCGGCCAGAACGACGCCGTACCCGATTCCGCAGGTAAGGCAACAGAGCATGGTTGCATTATTTCCAGAAATGGTTTTGGAGGAGTCAGGCGCGGCTAAGATTGAAAGTGGCACCAAGCTCTATTTATCTAACTTGGATCATGGAGTTACCAACGATGATATCAAGCTGCTGTTCTCGGAAGAGGGTGAATTGAAAAGCTACACTATTCATTATGATCAGAGTGGAAGATCAAAGGGAACTGCAGAAGTTGTGTTCGTGAGGCATTCTGATGCTTTATTAGCCATCAAGAAATACAACAATATGAGGCTTGATGGAAAGCCATTGCAAATTGAGCTTGTTGGAACAAGTTTGGCTACTCCTGCTGTCGCTCCTCTTTGTCAAAATAACTTGATGGGAAGACCAAATGATGTCCATTTTAGCACACGAGGAAGGGTTGGCGATAGTGGGTTTCACAATGACTTTGCACAGGGCTACCTTCCAAGGGGCCGTGGAGAAGAGAAGGACCATATTCGAAAGGTGTCTTTTAGAGATCTTGATCATAGCTTTGAGAGGTTTCACCGCACTCAGAGTCAGAGAAGCTACGCAAAAGTAAATGGCAATTTTGGAAAGGTGACTGCTAAAGATCTTGATGATGACTTGGAGAGGTATCACTTAGAGGCTAAGCGGATTAAAAAGCAAAATGGAAAGTGA
Predicted protein sequences of Glyma02g10380
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g10380.1 sequence type=predicted peptide gene model=Glyma02g10380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAGGIDMSLDDIKKRSAAAVASRRRFTVVHNPARTTPYPIPQVRQQSMVALFPEMVLEESGAAKIESGTKLYLSNLDHGVTNDDIKLLFSEEGELKSYTIHYDQSGRSKGTAEVVFVRHSDALLAIKKYNNMRLDGKPLQIELVGTSLATPAVAPLCQNNLMGRPNDVHFSTRGRVGDSGFHNDFAQGYLPRGRGEEKDHIRKVSFRDLDHSFERFHRTQSQRSYAKVNGNFGKVTAKDLDDDLERYHLEAKRIKKQNGK*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
