Glyma02g10340 - SoyBase

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Report for Sequence Feature Glyma02g10340

Feature Type:	gene_model
Chromosome:	Gm02
Start:	8220836
stop:	8223978
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g10340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G01900	AT	Annotation by Michelle Graham. TAIR10: subtilase family protein \| chr1:310332-313011 FORWARD LENGTH=774	SoyBase	E_val: 0	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0043086	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of catalytic activity	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0031012	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular matrix	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0004252	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity	SoyBase	N/A	ISS
GO:0042802	GO-mf	Annotation by Michelle Graham. GO Molecular Function: identical protein binding	SoyBase	N/A	ISS
PTHR10795	Panther	SUBTILISIN/KEXIN-RELATED SERINE PROTEASE	JGI		ISS
PTHR10795:SF17	Panther	gb def: possible protease [sinorhizobium meliloti]	JGI		ISS
PF00082	PFAM	Subtilase family	JGI		ISS
PF02225	PFAM	PA domain	JGI		ISS
PF05922	PFAM	Peptidase inhibitor I9	JGI		ISS
UniRef100_G7L1F9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Subtilisin-like protease n=1 Tax=Medicago truncatula RepID=G7L1F9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JDQ1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1JDQ1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g10340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g10340

Paralog	Evidence	Comments
Glyma18g52575	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g10340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g093400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g10340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g10340

Limit To All Plant Sequences

>Glyma02g10340.1   sequence type=CDS   gene model=Glyma02g10340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCTTTAGGTTTAGGATACTTATCCTATTTCTGGCTTTGATGGTGACAAATTCAATAGCTTTCGCTGACCAACAGACATATATAGTACACATGGACCAGACCAAGATCAAAGCCTCAATTCACACTCAAGACAGCACAAAACCATGGTTTGAATCAATCATTGATTTCATTTCTGAATCTTCAATGCAAGAAGAAGATGAAGAAGACGACAATTTAGCCCCTCAACTCCTTTACACATATGAAACCAGCATGTTTGGTTTTGCTGCCCATCTTTCCAAGAAACACCTCAAATACTTAAACCAAGTTGATGGTTTCCTCTCAGCCATACCTGATGAACTGTCAACCCTCCACACAACATACACGCCTCACTTTCTTGGCCTAAGGAATGGAAGATCACTTTGGAGTGCTTCTAACTTGGCCACAGATGTGATCATTGGAGTTCTTGATTCAGGAATATGGCCTGAACACATCAGTTTCCAAGACTCAGGCATGTCCCCAGTGCCTTCTCATTGGAAAGGTGTTTGTGAAAAAGGCACCAAGTTCTCTTCCTCAAATTGCAACAAGAAGCTTGTTGGTGCAAGAGCCTACTACAAGGGGTATGAAATTTTTTTTGGGAAAAAAATCAATGAAACAGTGGATTATCTTTCTCCAAGAGATTCCCAAGGGCATGGAACACACACTGCCTCAACTTCAGCTGGTAATGTAGTGAAAAATGCCAACTTTTTTGGCCAGGCTAGAGGCACAGCATGTGGAATGAGGTATACCTCTAGAATTGCAGTTTATAAAGTGTGCTGGTCTTCTGGTTGTACTAATGCCGACGTATTAGCAGCCATGGACCAAGCAGTTTCTGATGGTGTTGATGTGTTGTCACTCTCTTTAGGGAGTATTCCCAAACCTTTTTATAGTGATAGCATTGCCATAGCTTCATATGGGGCAATCAAGAAAGGGGTTTTGGTTGCTTGCTCCGCAGGCAATTCAGGCCCCTTTCCATCAACAGTTGGAAATGGTGCTCCATGGATCATGACAGTTGCTGCTAGCTCCACTGACCGAAGCTTTCCAACAAAAGTAAAGCTTGGAAATGGAAAAACCTTCAAAGGGTCATCTTTATATCAAGGTAAGAAGACAAACCAGTTGCCCCTTGTCTATGGAAAATCAGCAGGTGCAAAAAAGGAAGCACAGTATTGCATTGGAGGCTCCCTTGATCCAAAGCTTGTGCATGGGAAAATAGTTGCTTGTGAAAGAGGTATAAATGGTAGAACTGAGAAGGGAGAGGAAGTTAAAGTGGCTGGTGGAGCAGGAATGATACTACTCAACAATGAATATCAAGGAGAAGAGCTTTTTGCTGACCCTCATATTTTGCCAGCCACTTCCTTAGGGGCCTCAGCAAGTAAAACTATTAGAAGCTACAGTCAATCTGTTAAAAAACCAACAGCTTCAATTTCCTTTATGGGGACAAGGTTTGGTGACCCTGCACCAGTGATGGCAGCATTTTCTTCTAGAGGACCAAGCCTAGTGGGACCAGATGTAATTAAGCCTGATGTGACTGCACCTGGTGTGAACATCTTGGCTGCTTGGCCAACCAAAATTAGCCCAAGCTTTCTCATGAGTGACAAAAGAAAAGTACTATTTAACATACTTTCAGGTACTTCAATGTCTTGTCCTCATGTTAGTGGTATAGCAGCACTGCTCAAGTCTTTGCACAAAGATTGGTCCCCTGCAGCTATTAAATCTGCTCTGATGACTACTGCTTACACATTGAACAACAAAGGAGCTCCAATTTCAGACATGGCCTCAAATAATTCACCATTGGCTACCCCCTTTGCATTTGGTTCAGGCCATGTTAACCCTGTAAGTGCTTCTGATCCAGGATTAGTCTATGATATCAGCACCAAAGACTACTTAAATTATTTATGCAGCATAAACTATACCTCTTCTCAGATTGCTTTATTATCAAGAGGTAAATTTGTATGTTCTAAAAAAGCAGTTCTTCAAGCTGGTGACTTGAACTACCCTTCATTTGCTGTTCTATTAGGCAAAAGTGCCTTAAATGTTAGTGTGACATACAGGAGGGTTGTCACAAATGTTGGAAAACCACAAAGTGCCTATGCAGTTAAATTGGAACAGCCAAATGGAGTTTCAGTTACTGTTGAACCAAGGAAATTGAAATTTGAAAAAGTGGGTCAGAAATTGAGCTACAAGGTGACATTTTTGTCAATTGGAGGAGCAAGAGTTGCGGGTACCTCATCATTTGGGTCACTGATTTGGGTATCTGGCAGATATCAAGTTAGAAGTCCTATGGCAGTGACCTGGCAATAG

Predicted protein sequences of Glyma02g10340

Limit To All Plant Sequences

>Glyma02g10340.1   sequence type=predicted peptide   gene model=Glyma02g10340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIFRFRILILFLALMVTNSIAFADQQTYIVHMDQTKIKASIHTQDSTKPWFESIIDFISESSMQEEDEEDDNLAPQLLYTYETSMFGFAAHLSKKHLKYLNQVDGFLSAIPDELSTLHTTYTPHFLGLRNGRSLWSASNLATDVIIGVLDSGIWPEHISFQDSGMSPVPSHWKGVCEKGTKFSSSNCNKKLVGARAYYKGYEIFFGKKINETVDYLSPRDSQGHGTHTASTSAGNVVKNANFFGQARGTACGMRYTSRIAVYKVCWSSGCTNADVLAAMDQAVSDGVDVLSLSLGSIPKPFYSDSIAIASYGAIKKGVLVACSAGNSGPFPSTVGNGAPWIMTVAASSTDRSFPTKVKLGNGKTFKGSSLYQGKKTNQLPLVYGKSAGAKKEAQYCIGGSLDPKLVHGKIVACERGINGRTEKGEEVKVAGGAGMILLNNEYQGEELFADPHILPATSLGASASKTIRSYSQSVKKPTASISFMGTRFGDPAPVMAAFSSRGPSLVGPDVIKPDVTAPGVNILAAWPTKISPSFLMSDKRKVLFNILSGTSMSCPHVSGIAALLKSLHKDWSPAAIKSALMTTAYTLNNKGAPISDMASNNSPLATPFAFGSGHVNPVSASDPGLVYDISTKDYLNYLCSINYTSSQIALLSRGKFVCSKKAVLQAGDLNYPSFAVLLGKSALNVSVTYRRVVTNVGKPQSAYAVKLEQPNGVSVTVEPRKLKFEKVGQKLSYKVTFLSIGGARVAGTSSFGSLIWVSGRYQVRSPMAVTWQ*

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