Glyma02g10300 - SoyBase

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Report for Sequence Feature Glyma02g10300

Feature Type:	gene_model
Chromosome:	Gm02
Start:	8176338
stop:	8178468
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g10300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G59350	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). \| chr5:23941132-23941995 FORWARD LENGTH=287	SoyBase	E_val: 2.00E-33	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1N553	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N553_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q53NN2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Oryza sativa RepID=Q53NN2_ORYSJ	SoyBase	E_val: 8.00E-22	ISS

Expression Patterns of Glyma02g10300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g10300

Paralog	Evidence	Comments
Glyma18g52620	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g10300 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g093100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g10300

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g10300

Limit To All Plant Sequences

>Glyma02g10300.2   sequence type=transcript   gene model=Glyma02g10300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCCATAAGCCAGACAGGTACATGCTCACTCTCTCTATAGTTATTTTCTGGCTCCTGGTTTTGGTGCACCCTCAAACTTAAAGTGGTTTATGGTTTAATGGATCTTTCTCTTTTCACCTGTTTAAAAGTGTTCCATTACATTCTTTGAGGGCAATTATGAGACTAATCCACATGAGGGTGTTTAATCTTAAATGGGGTTAGCTAGCTAGGTTAAAGCCAAGGGCCCATGGGCTCATGCTTATGATTTGCAAGTGTTGCTTTCAAGGGAAAAAAGAGAGCTTTTTCTTCGGTTGGCCCTTTTAGCAGATTGATGTTCTGAGAGGTTTTGCAATTTGAAACCAAGGTTTGTCATTATGTCATGCTTTATTGGTGGGGAGGGGATGTAGTCATGTTATGTATGTAGATACAATATTACATTCATACATTGAATTTTAGTCACAAGATATTATCCACATTTTCAGTGCTTGAATTCAGAATCAGAGGGTAAAAGTTGAGTTGAGAGTACTGTTAGTTAATTGCTCAGTAAGCTTTCCCTGAACACTTAAACATGTATCTTCTCTTCGATGAAATTTGATTTTGTTTTTGTAGTGCACTGGTCTGTTTGATGTGATTTTCTGGATCATAGAGATTAATTAGTTTGGACATTAAGTATTTTAGGAGGTTGAACAATTTCAAATTGTTTTCAATGTGATTTGAGGACAAAGATGAAATCCTTGAGTAGTGTAGGTCTTGGTCTGAGTATTATTTTTGGTTGTCTCTTGTTGGCTCTAGTAGCTGAGGTTTACTATTTGCTATGGTGGAAGAAGAGGATAACCAACAGAGAGATTGAGAATGATTATGGCAACCCTGTGAAGGAATTATTCTACATGTTTTGTTGGAAAAGGCCATCATCATCTTCTTTGAGGCAAACAAGTTTCACTCCTCCTGAGTTTTGTTCTTCAATGAGAATTGGTGACACCCTTGTTCATGACCCAGAACAAGTTCAGTCTCAAAGTGGAAAGGAATTTGTTTTCAAACCCTTTGGAGAAGATGGCACCGATGCAGAATACATGAGGCAACAGGACCTGTTACTGTTAGGCCCTCCAAGATTCTTGTTCACCATAGTAGAAGAATCAAAAGAAGATTTAGAATCTGATGATGGCAAATCCAAGTGTGACAAGAGTGGAAAAGGTTCAAGGGGTAGAAGCTTGGGTGATTTACTAGTTGTGGAGACACCATATATGACACCTACAACTTCTCCACCTTTCTTCACTCCTCCTTTCACTACTCCTATCAGTCCCTATAACCAACGTGGATTCAACCCTCTATTTGAAACAGCAACTGATGCTGAGTTCAACAAATTAAAGTCCTCACCTCCTCCAAAATTCAAGTTCTTACAGGAAGCAGAAGAGAAGCTTAGAAGAAAACTACAAGAAGACGAAAATAAGGGAAATGGAGATGAGGTTGATGGTTCTTTCATCACAATAGTAGTTGACAAGAAAACAGAAAGAGAGGTTAATCACCAGCCTCGTCCACCACAGTATCATTCAAGCACTTCACAGGTACTTCCCTTAGCTTCTTGACACATTCACCAAAAACCAGATGAAAGAAGCTAGCTAACACCAAAGTTCTGTCAAGTCAATTAAGAGTTTATTTCTTCATTAATTTTTTCTACTTACATGTTGAAGAATTCCACTTTTTTTTTTGTTATGGGAATTTGTTCCCCCCCCCGAGTTGTTTAGGGATGCAGTATGGTTTAATCTGCTAAGCCAGTTGTGAAATGTACTACCCTCAATGTTTCAAAACATATGGGGGACAATATTTTCTACTCATAAATGCTTAAAGGTGGGTCTGATGCAATTGGAAAGTTT

Coding sequences of Glyma02g10300

Limit To All Plant Sequences

>Glyma02g10300.1   sequence type=CDS   gene model=Glyma02g10300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTTGTTGGAAAAGGCCATCATCATCTTCTTTGAGGCAAACAAGTTTCACTCCTCCTGAGTTTTGTTCTTCAATGAGAATTGGTGACACCCTTGTTCATGACCCAGAACAAGTTCAGTCTCAAAGTGGAAAGGAATTTGTTTTCAAACCCTTTGGAGAAGATGGCACCGATGCAGAATACATGAGGCAACAGGACCTGTTACTGTTAGGCCCTCCAAGATTCTTGTTCACCATAGTAGAAGAATCAAAAGAAGATTTAGAATCTGATGATGGCAAATCCAAGTGTGACAAGAGTGGAAAAGGTTCAAGGGGTAGAAGCTTGGGTGATTTACTAGTTGTGGAGACACCATATATGACACCTACAACTTCTCCACCTTTCTTCACTCCTCCTTTCACTACTCCTATCAGTCCCTATAACCAACGTGGATTCAACCCTCTATTTGAAACAGCAACTGATGCTGAGTTCAACAAATTAAAGTCCTCACCTCCTCCAAAATTCAAGTTCTTACAGGAAGCAGAAGAGAAGCTTAGAAGAAAACTACAAGAAGACGAAAATAAGGGAAATGGAGATGAGGTTGATGGTTCTTTCATCACAATAGTAGTTGACAAGAAAACAGAAAGAGAGGTTAATCACCAGCCTCGTCCACCACAGTATCATTCAAGCACTTCACAGGTACTTCCCTTAGCTTCTTGA

>Glyma02g10300.2   sequence type=CDS   gene model=Glyma02g10300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATCCTTGAGTAGTGTAGGTCTTGGTCTGAGTATTATTTTTGGTTGTCTCTTGTTGGCTCTAGTAGCTGAGGTTTACTATTTGCTATGGTGGAAGAAGAGGATAACCAACAGAGAGATTGAGAATGATTATGGCAACCCTGTGAAGGAATTATTCTACATGTTTTGTTGGAAAAGGCCATCATCATCTTCTTTGAGGCAAACAAGTTTCACTCCTCCTGAGTTTTGTTCTTCAATGAGAATTGGTGACACCCTTGTTCATGACCCAGAACAAGTTCAGTCTCAAAGTGGAAAGGAATTTGTTTTCAAACCCTTTGGAGAAGATGGCACCGATGCAGAATACATGAGGCAACAGGACCTGTTACTGTTAGGCCCTCCAAGATTCTTGTTCACCATAGTAGAAGAATCAAAAGAAGATTTAGAATCTGATGATGGCAAATCCAAGTGTGACAAGAGTGGAAAAGGTTCAAGGGGTAGAAGCTTGGGTGATTTACTAGTTGTGGAGACACCATATATGACACCTACAACTTCTCCACCTTTCTTCACTCCTCCTTTCACTACTCCTATCAGTCCCTATAACCAACGTGGATTCAACCCTCTATTTGAAACAGCAACTGATGCTGAGTTCAACAAATTAAAGTCCTCACCTCCTCCAAAATTCAAGTTCTTACAGGAAGCAGAAGAGAAGCTTAGAAGAAAACTACAAGAAGACGAAAATAAGGGAAATGGAGATGAGGTTGATGGTTCTTTCATCACAATAGTAGTTGACAAGAAAACAGAAAGAGAGGTTAATCACCAGCCTCGTCCACCACAGTATCATTCAAGCACTTCACAGGTACTTCCCTTAGCTTCTTGA

Predicted protein sequences of Glyma02g10300

Limit To All Plant Sequences

>Glyma02g10300.1   sequence type=predicted peptide   gene model=Glyma02g10300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFCWKRPSSSSLRQTSFTPPEFCSSMRIGDTLVHDPEQVQSQSGKEFVFKPFGEDGTDAEYMRQQDLLLLGPPRFLFTIVEESKEDLESDDGKSKCDKSGKGSRGRSLGDLLVVETPYMTPTTSPPFFTPPFTTPISPYNQRGFNPLFETATDAEFNKLKSSPPPKFKFLQEAEEKLRRKLQEDENKGNGDEVDGSFITIVVDKKTEREVNHQPRPPQYHSSTSQVLPLAS*

>Glyma02g10300.2   sequence type=predicted peptide   gene model=Glyma02g10300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSLSSVGLGLSIIFGCLLLALVAEVYYLLWWKKRITNREIENDYGNPVKELFYMFCWKRPSSSSLRQTSFTPPEFCSSMRIGDTLVHDPEQVQSQSGKEFVFKPFGEDGTDAEYMRQQDLLLLGPPRFLFTIVEESKEDLESDDGKSKCDKSGKGSRGRSLGDLLVVETPYMTPTTSPPFFTPPFTTPISPYNQRGFNPLFETATDAEFNKLKSSPPPKFKFLQEAEEKLRRKLQEDENKGNGDEVDGSFITIVVDKKTEREVNHQPRPPQYHSSTSQVLPLAS*

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