Glyma02g10161 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma02g10161

Feature Type:	gene_model
Chromosome:	Gm02
Start:	8040459
stop:	8044053
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g10161

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G46540	AT	Annotation by Michelle Graham. TAIR10: ENTH/VHS family protein \| chr3:17134204-17135411 REVERSE LENGTH=307	SoyBase	E_val: 1.00E-50	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
PTHR12276	Panther	EPSIN/ENT-RELATED	JGI		ISS
PTHR12276:SF10	Panther	ENT1-RELATED	JGI		ISS
PF01417	PFAM	ENTH domain	JGI		ISS
UniRef100_Q9SNC4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ENTH/VHS family protein n=1 Tax=Arabidopsis thaliana RepID=Q9SNC4_ARATH	SoyBase	E_val: 6.00E-48	ISS
UniRef100_UPI0002337597	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337597 related cluster n=1 Tax=unknown RepID=UPI0002337597	SoyBase	E_val: 4.00E-100	ISS

Expression Patterns of Glyma02g10161

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g10161 not represented in the dataset	Glyma02g10161 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g10161

Paralog	Evidence	Comments
Glyma18g52800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g10161 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g091800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g10161

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g10161

Limit To All Plant Sequences

>Glyma02g10161.2   sequence type=transcript   gene model=Glyma02g10161   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCAAATATGAGTTCTGCTCTCATCCATGAAATCAAAGGGCAAGCATTTCGGTTCTTGAAGGAGAAGATTAAAACTGCAAGGCTAGTGCTCACGGATGTTACACCAGTACAATTAATGACAGAAGAAGTCACAAATGAGAATCCACGGCCACCAGATACGCGAACCAGGAGTATAATAGCACGAGCTGCCTTCGAAGTGGATGAATATGAGAGAATAGAGATTTTGCATCACAGGTTGTCGAAATTTGATAAAGGGTATTGGAGAGCCTCATACAATGCTCTTACTTTACTGGAACATCTTCTAACTCATGGACCTAAAAGAGTACCCGAGGAGTTTCAATGTGATATACATGTTATTGAAGAGATTGGACAATTTCAGTACATTGATGAAAAACGGTTCAACTGGGGTTTGAGTGTTAGAAAATTATCAGAAAGAATATTAAAGCTCTTAAAAACAAGGATTTTTTCACAGAAGAAAGAGCAACAGCACGCAATCTTTCTCATGCAATCAAAGGTTTTGGAAGTTTTAATTGTAACATCCCAATTTTTCGTAAATAAATTTAAAAAGTTTTTTTAGTAAAAATAAATAAATAAATAAATATAGAGTAAATAATAGGCTGAGTACCCTAAGTATAAATAGTTATGTTAAGTCAGCTGCCTCCTTTTGGCCTCATTTTCGTTTTTCCTCTTCTCCTCTCAAAACCCTTTCTTTTTCCCGCAGCCCATCAAACCTATCTCAGTAAAACGACGATCTCGAACTCGTTCACCGTTGGATCGTCGTGAAATTTGAGTATCATGTTTGCAACCCAATTCCGAACATTCTCACCGTTGGTAATTTCAAAATCATATCTGATCTTAGAGAAAAGCCCTTCGCATTGTAGCATTTTAATTTCCCGCAGAAACCCAAAATTGTCTCGGTAAAACTACGATCCCGGTTTCGTTAGCCGTTGGATTTTCATGAAATTTGGATATGTTGTTCGAAATTCAATTCCGCACGCTTCCACCGTTGGGATTTTTGAGAAAATATTCGTGGAGGAAGAAAAAGGAATCGCATGAAGACAGTACAAGTGAAAGTTTCAATCTCTTCTCCGTCTCTCTGACGTTTTGGAATTCTATCGGAGCAGTCAGAGAAATAATTGAAAGAATTTCAGGGAACCACTAGAGATGTTGCTATCGCTGGTTGAAGACACGTGAGTCCGCTCAGAGATGAATAGGTGGATGACTATGAAGAACCTCATGCTAGAGGACACGGGAACACAACGCTCTGATAGGATGTAACATTAGGATATAGGTTCTATATTAATTGTATGAAGCTTAGACGACCTTGTTGAGTCGAGAATACTTTATTATTTATTTGGACAAGTTTAAATATGATGTAGATGAAAATGAATGTGAGCATTTTTCCCCTTTGAAAGACTTGTTTAAAAAAAATGTTTTAAAAATACTTTTAAT

Coding sequences of Glyma02g10161

Limit To All Plant Sequences

>Glyma02g10161.1   sequence type=CDS   gene model=Glyma02g10161   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTCTGCTCTCATCCATGAAATCAAAGGGCAAGCATTTCGGTTCTTGAAGGAGAAGATTAAAACTGCAAGGCTAGTGCTCACGGATGTTACACCAGTACAATTAATGACAGAAGAAGTCACAAATGAGAATCCACGGCCACCAGATACGCGAACCAGGAGTATAATAGCACGAGCTGCCTTCGAAGTGGATGAATATGAGAGAATAGAGATTTTGCATCACAGGTTGTCGAAATTTGATAAAGGGTATTGGAGAGCCTCATACAATGCTCTTACTTTACTGGAACATCTTCTAACTCATGGACCTAAAAGAGTACCCGAGGAGTTTCAATGTGATATACATGTTATTGAAGAGATTGGACAATTTCAGTACATTGATGAAAAACGGTTCAACTGGGGTTTGAGTGTTAGAAAATTATCAGAAAGAATATTAAAGCTCTTAAAAACAAGGATTTTTTCACAGAAGAAAGAGCAACAGCACGCAATCTTTCTCATGCAATCAAAGCCCATCAAACCTATCTCAGTAAAACGACGATCTCGAACTCGTTCACCGTTGGATCGTCGTGAAATTTGA

>Glyma02g10161.2   sequence type=CDS   gene model=Glyma02g10161   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTCTGCTCTCATCCATGAAATCAAAGGGCAAGCATTTCGGTTCTTGAAGGAGAAGATTAAAACTGCAAGGCTAGTGCTCACGGATGTTACACCAGTACAATTAATGACAGAAGAAGTCACAAATGAGAATCCACGGCCACCAGATACGCGAACCAGGAGTATAATAGCACGAGCTGCCTTCGAAGTGGATGAATATGAGAGAATAGAGATTTTGCATCACAGGTTGTCGAAATTTGATAAAGGGTATTGGAGAGCCTCATACAATGCTCTTACTTTACTGGAACATCTTCTAACTCATGGACCTAAAAGAGTACCCGAGGAGTTTCAATGTGATATACATGTTATTGAAGAGATTGGACAATTTCAGTACATTGATGAAAAACGGTTCAACTGGGGTTTGAGTGTTAGAAAATTATCAGAAAGAATATTAAAGCTCTTAAAAACAAGGATTTTTTCACAGAAGAAAGAGCAACAGCACGCAATCTTTCTCATGCAATCAAAGGTTTTGGAAGTTTTAATTGTAACATCCCAATTTTTCGTAAATAAATTTAAAAAGTTTTTTTAG

Predicted protein sequences of Glyma02g10161

Limit To All Plant Sequences

>Glyma02g10161.1   sequence type=predicted peptide   gene model=Glyma02g10161   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSALIHEIKGQAFRFLKEKIKTARLVLTDVTPVQLMTEEVTNENPRPPDTRTRSIIARAAFEVDEYERIEILHHRLSKFDKGYWRASYNALTLLEHLLTHGPKRVPEEFQCDIHVIEEIGQFQYIDEKRFNWGLSVRKLSERILKLLKTRIFSQKKEQQHAIFLMQSKPIKPISVKRRSRTRSPLDRREI*

>Glyma02g10161.2   sequence type=predicted peptide   gene model=Glyma02g10161   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSALIHEIKGQAFRFLKEKIKTARLVLTDVTPVQLMTEEVTNENPRPPDTRTRSIIARAAFEVDEYERIEILHHRLSKFDKGYWRASYNALTLLEHLLTHGPKRVPEEFQCDIHVIEEIGQFQYIDEKRFNWGLSVRKLSERILKLLKTRIFSQKKEQQHAIFLMQSKVLEVLIVTSQFFVNKFKKFF*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain