Report for Sequence Feature Glyma02g10140
Feature Type: gene_model
Chromosome: Gm02
Start: 8021162
stop: 8022560
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g10140
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G55420 AT
Annotation by Michelle Graham. TAIR10: unknown protein; Has 21 Blast hits to 21 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:20547920-20548570 FORWARD LENGTH=216
SoyBase E_val: 2.00E-88 ISS
GO:0006949 GO-bp
Annotation by Michelle Graham. GO Biological Process: syncytium formation
SoyBase N/A ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_B7E7C1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: cDNA clone:001-101-B09, full insert sequence n=3 Tax=Oryza RepID=B7E7C1_ORYSJ
SoyBase E_val: 1.00E-99 ISS
UniRef100_I1JDN6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JDN6_SOYBN
SoyBase E_val: 2.00E-167 ISS
Expression Patterns of Glyma02g10140
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma02g10140
Paralog Evidence Comments
Glyma18g52840 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma02g10140 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.02g091600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma02g10140
Coding sequences of Glyma02g10140
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g10140.1 sequence type=CDS gene model=Glyma02g10140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGAGAGAAAGAGAAGAGAAACAAGAACAAGAAGCAAAAGCACCAACACCCCAATGACCAAACCACAAAGCAGAACTCCGATTTCTCCTTCAAGCCAAGCTCAGAGGTAAAGGGTATCAAATTTGGAGGCCAGTTCATAGTGAAGTCCTTCACAATCAGAAGAGCAAGACCCTTAGAGCTTCTCAAGGTTCTTTCTTTCCCACCAACCAACAACACCAACAAACCAAAGGACAAGCTTCCTTTCCCTTCCACCACAGCATTCTTGCCCACAAACTTCACAATCTTGGCACACCATGCTTGGCACACCCTCACCCTTGGCCTTGGAACCAAGAAGTCCAAGGTGGTTCTCTTTGTGTTTGAAACTGAGGCCATGAAGGCCTCAGTGGACAGAATTTGGCCACCAGAGATAGCACTTGGTGATGTCAACAAGAGGCTCATAAGGGGCCTCAATGGATGTGAGATGGCAAGGTTCAAGTTCAGAAAAGGGTGCATAACTTTCTATGTCTATGCTGTTAGGCAACTTGGAAGCTTTGGCTTTTCCTGTGCTGAGGATCTAAGAACCATTCTTCAGTCTGTGGTGGAGCTTAAGGATTTCTTGGATCACACTGTCATGCTTTCCATGCCAAACCAAAGAAGCATCAGTTTCTCACAGTCACAACCCCAGGTAGCCATGGCTCATTAG
Predicted protein sequences of Glyma02g10140
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g10140.1 sequence type=predicted peptide gene model=Glyma02g10140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGEKEKRNKNKKQKHQHPNDQTTKQNSDFSFKPSSEVKGIKFGGQFIVKSFTIRRARPLELLKVLSFPPTNNTNKPKDKLPFPSTTAFLPTNFTILAHHAWHTLTLGLGTKKSKVVLFVFETEAMKASVDRIWPPEIALGDVNKRLIRGLNGCEMARFKFRKGCITFYVYAVRQLGSFGFSCAEDLRTILQSVVELKDFLDHTVMLSMPNQRSISFSQSQPQVAMAH*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
