Glyma02g10060 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma02g10060): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma02g10060): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma02g10060

Feature Type:	gene_model
Chromosome:	Gm02
Start:	7965842
stop:	7973596
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g10060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G58140	AT	Annotation by Michelle Graham. TAIR10: phenylalanyl-tRNA synthetase class IIc family protein \| chr3:21529988-21532386 REVERSE LENGTH=429	SoyBase	E_val: 0	ISS
GO:0006418	GO-bp	Annotation by Michelle Graham. GO Biological Process: tRNA aminoacylation for protein translation	SoyBase	N/A	ISS
GO:0006432	GO-bp	Annotation by Michelle Graham. GO Biological Process: phenylalanyl-tRNA aminoacylation	SoyBase	N/A	ISS
GO:0008033	GO-bp	Annotation by Michelle Graham. GO Biological Process: tRNA processing	SoyBase	N/A	ISS
GO:0009658	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast organization	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0043039	GO-bp	Annotation by Michelle Graham. GO Biological Process: tRNA aminoacylation	SoyBase	N/A	ISS
GO:0048481	GO-bp	Annotation by Michelle Graham. GO Biological Process: ovule development	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0000049	GO-mf	Annotation by Michelle Graham. GO Molecular Function: tRNA binding	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0000287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding	SoyBase	N/A	ISS
GO:0004812	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aminoacyl-tRNA ligase activity	SoyBase	N/A	ISS
GO:0004826	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phenylalanine-tRNA ligase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG2783	KOG	Phenylalanyl-tRNA synthetase	JGI		ISS
PTHR11538	Panther	PHENYLALANYL-TRNA SYNTHETASE RELATED	JGI		ISS
PF01409	PFAM	tRNA synthetases class II core domain (F)	JGI		ISS
PF03147	PFAM	Ferredoxin-fold anticodon binding domain	JGI		ISS
UniRef100_G7KW40	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 50S ribosomal protein L20 n=1 Tax=Medicago truncatula RepID=G7KW40_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JDN2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JDN2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g10060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g10060 not represented in the dataset	Glyma02g10060 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g10060

Paralog	Evidence	Comments
Glyma18g52890	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g10060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g091300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g10060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g10060

Limit To All Plant Sequences

>Glyma02g10060.2   sequence type=transcript   gene model=Glyma02g10060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATAGCCCAATTTATCCGAGAATACAGAAATGGACCGGGGCAAAGAAGACCCGATAAACAAAAAACGAGCTCTGAACTCTGAACTCTGAACTATAGCTACTCTACCCATTACATTACACACTTAGCTCAACAACAACCATATTTCCAACGGTGCATGGCAATGGTGATCTCTTCTGTTCATGCCACACTATTTGCCAGGGCCTCTTTCTTTTGCCAAAGTAGTGGCCTAAGAAGCTTTAGATCGTGTTTACCTTTCTCATCTTCAGCTGCTTCTGTCTCCTCTCACAATCTTTCACGGAAGAAATGGAGGCAGCCAGTGTTGTCAGTGTTGGATCTTGGCGGAGTCAAGATAAGCAGAGAAGATGTGGTGAGGGATGATCCGGCAAACAATGTGCCAGACAATATATTTTCAAAACTTGGAGTGCAGCTTCACCGGAGGGATCAACACCCTCTTGGGATACTGAAGAATGCGATATACGAGTATTTTGACACTAATTATTCAAATAAGTTCAACAAGTTTGATGATCTTTGTCCTATTGTTTCAGTGAAGCAGAATTTCGATGATGTCTTGTTTCCTGAAGACCATGTAAGTAGAAGCTATAATGATACTTACTACATAGATCCTCAGACTGTTTTAAGGTGTCACACAAGTGCTCATCAGGCAGAATTATTGAGAAGTGAATACACCCATTTCCTTGTTACAGGAGATGTTTACCGTAGGGATTCAATTGATTCAACTCATTATCCTGTCTTCCATCAAATGGAAGGCTTTCGGGTTTTTGTTCCAGAAGAATGGGAGGGATCTGGAATGGATGCCACATTATTTGCAGCAACAGACTTAAAGCAATGCCTTGAGGGTCTAGCACGCCATTTATTTGGTGCTGTGGAAATGCGCTGGGTGGATACTTATTTCCCATTTACTAATCCATCATTTGAACTTGAAATTTATTTCAAGGAAAAGTGGTTGGAAGTTTTGGGGTGTGGAGTGACAGAGCAAGAGATTCTGAAGAGAAATGGGAAACCTAATAAGGTTGCTTGGGCTTTTGGCCTAGGGTTGGAGAGGTTAGCTATGGTTCTATTTGACATACCTGATATTCGTCTCTTTTGGTCAAATGATGAGCGATTTACCTCTCAGTTTTCCAAGGGTCAGTTGGGAGTCAAATTTAAGCCATTTTCAAAGTATCCTCCTTGTTACAAGGACATGAGTTTCTGGATCAGTGAATCATTTACTGAAAACAATCTGTGTGAAGTTGTTAGAGGAATAGCCGGGGATCTTGTAGAGGAGGTGCAATTAATAGACAACTTCACCAACAAGAAAGGAATGACCAGCCACTGCTATAGGATTGCATATAGGTCTATGGAACGTTCTCTCACTGATGAGGAAATAAACGATCTGCAGTGGAAAGTAAGAGAACAGGTGCAGAGCAAATTGAATGTTGTCTTAAGATGAACTATAAATGCTGAAAATTTACAGCTTTGCTGTTTTCGATCTCAATTTTGTTAATGTATAGATGTTTTGCCTCCCTTTAGCGACTGAACAGCGCTATAGACAGATCTATTATTTAATTTTCACATAGTGAATATACACTACAATATATAACGAGCCATGGCTAGCCCAACAGGATTATCTGTATCATCTATTTTCTTCAAGAACATAATACTACCCTGTTTTGGTGAAAAATTGTTTTATTGTAAAATTGTTGGACCCCTACACACGAAATGGTATGTTCCCAACGATAAAATTTGTGTTCGTGTTTCATAACAAAGCACTGATATGATCTTGCGGAAAAATAAAAGAATCCCCGTTGCCGAAAGTGGGATTGTGGACGATTGTTACTTTAT

Coding sequences of Glyma02g10060

Limit To All Plant Sequences

>Glyma02g10060.1   sequence type=CDS   gene model=Glyma02g10060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAATGGTGATCTCTTCTGTTCATGCCACACTATTTGCCAGGGCCTCTTTCTTTTGCCAAAGTAGTGGCCTAAGAAGCTTTAGATCGTGTTTACCTTTCTCATCTTCAGCTGCTTCTGTCTCCTCTCACAATCTTTCACGGAAGAAATGGAGGCAGCCAGTGTTGTCAGTGTTGGATCTTGGCGGAGTCAAGATAAGCAGAGAAGATGTGGTGAGGGATGATCCGGCAAACAATGTGCCAGACAATATATTTTCAAAACTTGGAGTGCAGCTTCACCGGAGGGATCAACACCCTCTTGGGATACTGAAGAATGCGATATACGAGTATTTTGACACTAATTATTCAAATAAGTTCAACAAGTTTGATGATCTTTGTCCTATTGTTTCAGTGAAGCAGAATTTCGATGATGTCTTGTTTCCTGAAGACCATGTAAGTAGAAGCTATAATGATACTTACTACATAGATCCTCAGACTGTTTTAAGGTGTCACACAAGTGCTCATCAGGCAGAATTATTGAGAAGTGAATACACCCATTTCCTTGTTACAGGAGATGTTTACCGTAGGGATTCAATTGATTCAACTCATTATCCTGTCTTCCATCAAATGGAAGGCTTTCGGGTTTTTGTTCCAGAAGAATGGGAGGGATCTGGAATGGATGCCACATTATTTGCAGCAACAGACTTAAAGCAATGCCTTGAGGGTCTAGCACGCCATTTATTTGGTGCTGTGGAAATGCGCTGGGTGGATACTTATTTCCCATTTACTAATCCATCATTTGAACTTGAAATTTATTTCAAGGAAAAGTGGTTGGAAGTTTTGGGGTGTGGAGTGACAGAGCAAGAGATTCTGAAGAGAAATGGGAAACCTAATAAGGTTGCTTGGGCTTTTGGCCTAGGGTTGGAGAGGTTAGCTATGGTTCTATTTGACATACCTGATATTCGTCTCTTTTGGTCAAATGATGAGCGATTTACCTCTCAGTTTTCCAAGGGTCAGTTGGGAGTCAAATTTAAGCCATTTTCAAAGTATCCTCCTTGTTACAAGGACATGAGTTTCTGGATCAGTGAATCATTTACTGAAAACAATCTGTGTGAAGTTGTTAGAGGAATAGCCGGGGATCTTGTAGAGGAGGTGCAATTAATAGACAACTTCACCAACAAGAAAGGAATGACCAGCCACTGCTATAGGATTGCATATAGGTCTATGGAACGTTCTCTCACTGATGAGGAAATAAACGATCTGCAGTGGAAAGTAAGAGAACAGGTGCAGAGCAAATTGAATGTTGTCTTAAGATGA

>Glyma02g10060.2   sequence type=CDS   gene model=Glyma02g10060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAATGGTGATCTCTTCTGTTCATGCCACACTATTTGCCAGGGCCTCTTTCTTTTGCCAAAGTAGTGGCCTAAGAAGCTTTAGATCGTGTTTACCTTTCTCATCTTCAGCTGCTTCTGTCTCCTCTCACAATCTTTCACGGAAGAAATGGAGGCAGCCAGTGTTGTCAGTGTTGGATCTTGGCGGAGTCAAGATAAGCAGAGAAGATGTGGTGAGGGATGATCCGGCAAACAATGTGCCAGACAATATATTTTCAAAACTTGGAGTGCAGCTTCACCGGAGGGATCAACACCCTCTTGGGATACTGAAGAATGCGATATACGAGTATTTTGACACTAATTATTCAAATAAGTTCAACAAGTTTGATGATCTTTGTCCTATTGTTTCAGTGAAGCAGAATTTCGATGATGTCTTGTTTCCTGAAGACCATGTAAGTAGAAGCTATAATGATACTTACTACATAGATCCTCAGACTGTTTTAAGGTGTCACACAAGTGCTCATCAGGCAGAATTATTGAGAAGTGAATACACCCATTTCCTTGTTACAGGAGATGTTTACCGTAGGGATTCAATTGATTCAACTCATTATCCTGTCTTCCATCAAATGGAAGGCTTTCGGGTTTTTGTTCCAGAAGAATGGGAGGGATCTGGAATGGATGCCACATTATTTGCAGCAACAGACTTAAAGCAATGCCTTGAGGGTCTAGCACGCCATTTATTTGGTGCTGTGGAAATGCGCTGGGTGGATACTTATTTCCCATTTACTAATCCATCATTTGAACTTGAAATTTATTTCAAGGAAAAGTGGTTGGAAGTTTTGGGGTGTGGAGTGACAGAGCAAGAGATTCTGAAGAGAAATGGGAAACCTAATAAGGTTGCTTGGGCTTTTGGCCTAGGGTTGGAGAGGTTAGCTATGGTTCTATTTGACATACCTGATATTCGTCTCTTTTGGTCAAATGATGAGCGATTTACCTCTCAGTTTTCCAAGGGTCAGTTGGGAGTCAAATTTAAGCCATTTTCAAAGTATCCTCCTTGTTACAAGGACATGAGTTTCTGGATCAGTGAATCATTTACTGAAAACAATCTGTGTGAAGTTGTTAGAGGAATAGCCGGGGATCTTGTAGAGGAGGTGCAATTAATAGACAACTTCACCAACAAGAAAGGAATGACCAGCCACTGCTATAGGATTGCATATAGGTCTATGGAACGTTCTCTCACTGATGAGGAAATAAACGATCTGCAGTGGAAAGTAAGAGAACAGGTGCAGAGCAAATTGAATGTTGTCTTAAGATGA

Predicted protein sequences of Glyma02g10060

Limit To All Plant Sequences

>Glyma02g10060.1   sequence type=predicted peptide   gene model=Glyma02g10060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMVISSVHATLFARASFFCQSSGLRSFRSCLPFSSSAASVSSHNLSRKKWRQPVLSVLDLGGVKISREDVVRDDPANNVPDNIFSKLGVQLHRRDQHPLGILKNAIYEYFDTNYSNKFNKFDDLCPIVSVKQNFDDVLFPEDHVSRSYNDTYYIDPQTVLRCHTSAHQAELLRSEYTHFLVTGDVYRRDSIDSTHYPVFHQMEGFRVFVPEEWEGSGMDATLFAATDLKQCLEGLARHLFGAVEMRWVDTYFPFTNPSFELEIYFKEKWLEVLGCGVTEQEILKRNGKPNKVAWAFGLGLERLAMVLFDIPDIRLFWSNDERFTSQFSKGQLGVKFKPFSKYPPCYKDMSFWISESFTENNLCEVVRGIAGDLVEEVQLIDNFTNKKGMTSHCYRIAYRSMERSLTDEEINDLQWKVREQVQSKLNVVLR*

>Glyma02g10060.2   sequence type=predicted peptide   gene model=Glyma02g10060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMVISSVHATLFARASFFCQSSGLRSFRSCLPFSSSAASVSSHNLSRKKWRQPVLSVLDLGGVKISREDVVRDDPANNVPDNIFSKLGVQLHRRDQHPLGILKNAIYEYFDTNYSNKFNKFDDLCPIVSVKQNFDDVLFPEDHVSRSYNDTYYIDPQTVLRCHTSAHQAELLRSEYTHFLVTGDVYRRDSIDSTHYPVFHQMEGFRVFVPEEWEGSGMDATLFAATDLKQCLEGLARHLFGAVEMRWVDTYFPFTNPSFELEIYFKEKWLEVLGCGVTEQEILKRNGKPNKVAWAFGLGLERLAMVLFDIPDIRLFWSNDERFTSQFSKGQLGVKFKPFSKYPPCYKDMSFWISESFTENNLCEVVRGIAGDLVEEVQLIDNFTNKKGMTSHCYRIAYRSMERSLTDEEINDLQWKVREQVQSKLNVVLR*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain