Glyma02g10030 - SoyBase

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Report for Sequence Feature Glyma02g10030

Feature Type:	gene_model
Chromosome:	Gm02
Start:	7938156
stop:	7940441
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g10030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G01275	AT	Annotation by Michelle Graham. TAIR10: RING/FYVE/PHD zinc finger superfamily protein \| chr2:142610-143809 REVERSE LENGTH=259	SoyBase	E_val: 1.00E-59	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR23012	Panther	MEMBRANE ASSOCIATED RING FINGER	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
PF12428	PFAM	Protein of unknown function (DUF3675)	JGI		ISS
UniRef100_G7KVA2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin-protein ligase MARCH2 n=1 Tax=Medicago truncatula RepID=G7KVA2_MEDTR	SoyBase	E_val: 2.00E-95	ISS
UniRef100_I1JDM9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JDM9_SOYBN	SoyBase	E_val: 4.00E-164	ISS

Expression Patterns of Glyma02g10030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g10030

Paralog	Evidence	Comments
Glyma18g52931	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g10030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g090900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g10030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g10030

Limit To All Plant Sequences

>Glyma02g10030.2   sequence type=transcript   gene model=Glyma02g10030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TACCACCTTAGGCAAACCAAAGAAATAAATAATAATCTACTCATAAGTTATAAAGCAAAAAAAAACTACACGAAAACATGGATGGAATTGATTTATATTGTGCTTTTAATTTCTAAATATAAATGTCTTAATGCTGAAAGGATTAGAGATCATTTTGTTTTGTTGGTTGATATGCTACATACTTAATCTTCCTTTGAGCCTGTTACTGAGATCTAAAGGAGGTTAAAACAAACAACTCTGTGGTCGAACCATGTTAATATGATTTAGATGGATGAGCAAATTATGTCATCTAATATATTGGTACAGTGTCGAATATGCCACGATGAGGATGAAGAGTCAAACATGGACACACCCTGTTCTTGTTGTGGCACATTGAAGTGGATTAATGTCTGCGGTTATTGGTATTCAGTATCTGCAGTATGCACATAAAAAATGTGTTCAAAGATGGTGCAATGAGAAAGGTGATACTATATGTGAAATTTGCCAACAGCAACTTAAGCCCGGCTATACTGCACCGCCATTGCCTCCTCTGTTACATTATGGTGGTTCTCCAATAACTTTTGGATGGAACTGGGAGATTTCAAGAAGGGATCTTCATAGCCACCAGTTCATAGCGATGTTTAATGCTAATCGTGAATTCCTAGACCTTGACTTTTCATATTCGTCAGCACCTTCTACAAGAAGCTTGATATTTTTCCGCATTATTGCCATTATTTTTATTGTTCTTCTTCTTTTACGCCATACACTTCCGATCATATTTATACTCAGTGGAGCAAGAGCATATTCATTGGCAGTGTTTATGCTAGTAGTGTTGAGAATCATTGGAATGATTGTACCAGTGTATATAATGGTTAAAGCTATTATTGCAATGCAACAGTTCCAATATCAGACACTCGATAATCAGCATTCCCCTATGCAAGCACACGGGGAAGATGAAATAGGACAATCTCAGTTGCGTGTCATTCATATTCAGTGATTCCATGGTCAACTTCGGATGAAGAAATTGTTATAACTTATAATGTTGAAAAGATAAATCAGAGTGAAGCCGTAATTATTTTTTATGTACAGGAAGGGTGAAAAAAGACCGAATTGAAGAGATATTTGATGTAGTTACTCTTCTGTGAAAGTCCATATTCAATGTAACTCTGGATGTTGTGGTATATACAACATAACCCCTTGTTACCAGAAACAAAAGAACGAGAAAGTATATACATTGTCATCACCAGTTGCTAACATAAAAATAAAATGGATCCTTG

Coding sequences of Glyma02g10030

Limit To All Plant Sequences

>Glyma02g10030.1   sequence type=CDS   gene model=Glyma02g10030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGAGCAAATTATGTCATCTAATATATTGGTACAGTGTCGAATATGCCACGATGAGGATGAAGAGTCAAACATGGACACACCCTGTTCTTGTTGTGGCACATTGAAGTATGCACATAAAAAATGTGTTCAAAGATGGTGCAATGAGAAAGGTGATACTATATGTGAAATTTGCCAACAGCAACTTAAGCCCGGCTATACTGCACCGCCATTGCCTCCTCTGTTACATTATGGTGGTTCTCCAATAACTTTTGGATGGAACTGGGAGATTTCAAGAAGGGATCTTCATAGCCACCAGTTCATAGCGATGTTTAATGCTAATCGTGAATTCCTAGACCTTGACTTTTCATATTCGTCAGCACCTTCTACAAGAAGCTTGATATTTTTCCGCATTATTGCCATTATTTTTATTGTTCTTCTTCTTTTACGCCATACACTTCCGATCATATTTATACTCAGTGGAGCAAGAGCATATTCATTGGCAGTGTTTATGCTAGTAGTGTTGAGAATCATTGGAATGATTGTACCAGTGTATATAATGGTTAAAGCTATTATTGCAATGCAACAGTTCCAATATCAGACACTCGATAATCAGCATTCCCCTATGCAAGCACACGGGGAAGATGAAATAGGACAATCTCAGTTGCGTGTCATTCATATTCAGTGA

>Glyma02g10030.2   sequence type=CDS   gene model=Glyma02g10030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGCGGTTATTGGTATTCAGTATCTGCAGTATGCACATAAAAAATGTGTTCAAAGATGGTGCAATGAGAAAGGTGATACTATATGTGAAATTTGCCAACAGCAACTTAAGCCCGGCTATACTGCACCGCCATTGCCTCCTCTGTTACATTATGGTGGTTCTCCAATAACTTTTGGATGGAACTGGGAGATTTCAAGAAGGGATCTTCATAGCCACCAGTTCATAGCGATGTTTAATGCTAATCGTGAATTCCTAGACCTTGACTTTTCATATTCGTCAGCACCTTCTACAAGAAGCTTGATATTTTTCCGCATTATTGCCATTATTTTTATTGTTCTTCTTCTTTTACGCCATACACTTCCGATCATATTTATACTCAGTGGAGCAAGAGCATATTCATTGGCAGTGTTTATGCTAGTAGTGTTGAGAATCATTGGAATGATTGTACCAGTGTATATAATGGTTAAAGCTATTATTGCAATGCAACAGTTCCAATATCAGACACTCGATAATCAGCATTCCCCTATGCAAGCACACGGGGAAGATGAAATAGGACAATCTCAGTTGCGTGTCATTCATATTCAGTGA

Predicted protein sequences of Glyma02g10030

Limit To All Plant Sequences

>Glyma02g10030.1   sequence type=predicted peptide   gene model=Glyma02g10030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDEQIMSSNILVQCRICHDEDEESNMDTPCSCCGTLKYAHKKCVQRWCNEKGDTICEICQQQLKPGYTAPPLPPLLHYGGSPITFGWNWEISRRDLHSHQFIAMFNANREFLDLDFSYSSAPSTRSLIFFRIIAIIFIVLLLLRHTLPIIFILSGARAYSLAVFMLVVLRIIGMIVPVYIMVKAIIAMQQFQYQTLDNQHSPMQAHGEDEIGQSQLRVIHIQ*

>Glyma02g10030.2   sequence type=predicted peptide   gene model=Glyma02g10030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSAVIGIQYLQYAHKKCVQRWCNEKGDTICEICQQQLKPGYTAPPLPPLLHYGGSPITFGWNWEISRRDLHSHQFIAMFNANREFLDLDFSYSSAPSTRSLIFFRIIAIIFIVLLLLRHTLPIIFILSGARAYSLAVFMLVVLRIIGMIVPVYIMVKAIIAMQQFQYQTLDNQHSPMQAHGEDEIGQSQLRVIHIQ*

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