Glyma02g10001 - SoyBase

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Report for Sequence Feature Glyma02g10001

Feature Type:	gene_model
Chromosome:	Gm02
Start:	7908170
stop:	7912050
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g10001

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G13410	AT	Annotation by Michelle Graham. TAIR10: FKBP-like peptidyl-prolyl cis-trans isomerase family protein \| chr5:4299830-4301706 REVERSE LENGTH=256	SoyBase	E_val: 5.00E-65	ISS
GO:0000413	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein peptidyl-prolyl isomerization	SoyBase	N/A	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0018208	GO-bp	Annotation by Michelle Graham. GO Biological Process: peptidyl-proline modification	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009543	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid lumen	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0031977	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid lumen	SoyBase	N/A	ISS
GO:0003755	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peptidyl-prolyl cis-trans isomerase activity	SoyBase	N/A	ISS
GO:0005528	GO-mf	Annotation by Michelle Graham. GO Molecular Function: FK506 binding	SoyBase	N/A	ISS
PTHR10516	Panther	FK506 BINDING PROTEIN	JGI		ISS
PF00254	PFAM	FKBP-type peptidyl-prolyl cis-trans isomerase	JGI		ISS
UniRef100_I1JDM6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Glycine max RepID=I1JDM6_SOYBN	SoyBase	E_val: 3.00E-106	ISS
UniRef100_UPI0002337595	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337595 related cluster n=1 Tax=unknown RepID=UPI0002337595	SoyBase	E_val: 1.00E-110	ISS

Expression Patterns of Glyma02g10001

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g10001 not represented in the dataset	Glyma02g10001 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g10001

Paralog	Evidence	Comments
Glyma18g52980	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g10001 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g090600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g10001

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g10001

Limit To All Plant Sequences

>Glyma02g10001.2   sequence type=transcript   gene model=Glyma02g10001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAGGGGTTTTCAGGAGAAAAAAACGCATGCACTGTGTAGGACTGACGTACATGGAGAGGATCTTTACTCACCTAGACCTTTTTTAGAAAATGCTACTAACAACGCAGAGAGCATGGGATCCACAAAGTAACTTTGGTCAATCAGCTGCGAGAAAAAGGAATGAAATAGCACAAAGTTTTCTCCTCCACTCACCCCAAACCCAATTCTCAACTCTCTCTCGCGCGTCTGTTTGTTAAGTTTTGCCATGCCATGGCGTCAATTATGTCCTTATCTCTTAGTTATGTTTCCCTCCCTAAATCTCAATTCTCAATCTCTGGACCCCAAAAATATCTCCGATTCTTCTTCCTCCGCTTCCGGCAGGACGGCAAGTTGTTGTTGTGCGCCATTGTTCCAACGAAGAAAGATTCTTTTCTCTTCCATAGGCATCTTTGCCGGAACCTTGTGCAACATTCCACTCACCGGAATTTCTTTGGCAGCTGAATTTGCCGATATGCCAGCGCTTAGAGGGAAGGATTATGGAAAGACAAAAATGCGATACCCAGATTACACTGAAACTGAATCAGGACTCCAATATAAGGACTTGCGACCGGGGAATGGCCCCAAACCCAAGATGGGTGAGACAGTAGTGGTAGACTGGGATGGCTACACCAGAGGTTATTATGGCCGCATATTTGAAGCACAGAATAAAACCAAGGGTGGTTCCTTTGAGGGCGATGACAAGAACTTTGTCAAATTCAAAATAGGTTATAATGAGGATAATTGTGCCCCCGGAACTTGGATATCCTGAGAATGATTTCAATAAGAGTGACCCAAGACCAACAACATTCTCGGGCCAACGAGCCTTGGATTTTGTGTTGAGGAACCAAGATTTGATAGATAAGACTCTCTTGTTTGATATTGAGCTGTTGAAGATTATACTGAACTGATTGATCAAATTTTGAATTGATTCTCAAATATCACCGTCAGAACATTGAGGTCTACCTATTTACAGAGGATAAGAGGATGCATGCAAACAACTGTTCTGTAGAAATTTTGTTAATATTGATATTTGATGCTTGCGTCAAATGGCCTCGGGAATAGATGCTATGAATAGTAAGTATATTATGGTCTTCGTTGTTGGTTTCTCTAGTAATAGTAACATATGAGGCATTCAAAGCAATTCTCCCCCAACATTGGGATACTGTATGAGACTGTAAGTACATGGGATGGAGCATCATATGATCAATTAGAAATTAGTAATAGTTAGCAGAAAAGCAATAATCATTGTAATATGAGAACTAAACATAATTCAGTGAAAATGGGTGATTTTCCCATTACACTTAAATATCAAGATTAAACATTAGTGTTAAATCTGGGCATCAACATTGTACTTGAGGTGCTTCAACATTCTGGATAAGTAATTCATTGCTCCATTTTCCT

Coding sequences of Glyma02g10001

Limit To All Plant Sequences

>Glyma02g10001.1   sequence type=CDS   gene model=Glyma02g10001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCATGGCGTCAATTATGTCCTTATCTCTTAGTTATGTTTCCCTCCCTAAATCTCAATTCTCAATCTCTGGACCCCAAAAATATCTCCGATTCTTCTTCCTCCGCTTCCGGCAGGACGGCAAGTTGTTGTTGTGCGCCATTGTTCCAACGAAGAAAGATTCTTTTCTCTTCCATAGGCATCTTTGCCGGAACCTTGTGCAACATTCCACTCACCGGAATTTCTTTGGCAGCTGAATTTGCCGATATGCCAGCGCTTAGAGGGAAGGATTATGGAAAGACAAAAATGCGATACCCAGATTACACTGAAACTGAATCAGGACTCCAATATAAGGACTTGCGACCGGGGAATGGCCCCAAACCCAAGATGGGTGAGACAGTAGTGGTAGACTGGGATGGCTACACCAGAGGTTATTATGGCCGCATATTTGAAGCACAGAATAAAACCAAGGGTGGTTCCTTTGAGGGCGATGACAAGAACTTTGTCAAATTCAAAATAGGTTATAATGAGGTAATACCAGCTTTTGAAGAGGCTGTTTCGGGCCTGGCTCTTGGGGCATTAGAAGGATAA

>Glyma02g10001.2   sequence type=CDS   gene model=Glyma02g10001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCATGGCGTCAATTATGTCCTTATCTCTTAGTTATGTTTCCCTCCCTAAATCTCAATTCTCAATCTCTGGACCCCAAAAATATCTCCGATTCTTCTTCCTCCGCTTCCGGCAGGACGGCAAGTTGTTGTTGTGCGCCATTGTTCCAACGAAGAAAGATTCTTTTCTCTTCCATAGGCATCTTTGCCGGAACCTTGTGCAACATTCCACTCACCGGAATTTCTTTGGCAGCTGAATTTGCCGATATGCCAGCGCTTAGAGGGAAGGATTATGGAAAGACAAAAATGCGATACCCAGATTACACTGAAACTGAATCAGGACTCCAATATAAGGACTTGCGACCGGGGAATGGCCCCAAACCCAAGATGGGTGAGACAGTAGTGGTAGACTGGGATGGCTACACCAGAGGTTATTATGGCCGCATATTTGAAGCACAGAATAAAACCAAGGGTGGTTCCTTTGAGGGCGATGACAAGAACTTTGTCAAATTCAAAATAGGTTATAATGAGGATAATTGTGCCCCCGGAACTTGGATATCCTGA

Predicted protein sequences of Glyma02g10001

Limit To All Plant Sequences

>Glyma02g10001.1   sequence type=predicted peptide   gene model=Glyma02g10001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPWRQLCPYLLVMFPSLNLNSQSLDPKNISDSSSSASGRTASCCCAPLFQRRKILFSSIGIFAGTLCNIPLTGISLAAEFADMPALRGKDYGKTKMRYPDYTETESGLQYKDLRPGNGPKPKMGETVVVDWDGYTRGYYGRIFEAQNKTKGGSFEGDDKNFVKFKIGYNEVIPAFEEAVSGLALGALEG*

>Glyma02g10001.2   sequence type=predicted peptide   gene model=Glyma02g10001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPWRQLCPYLLVMFPSLNLNSQSLDPKNISDSSSSASGRTASCCCAPLFQRRKILFSSIGIFAGTLCNIPLTGISLAAEFADMPALRGKDYGKTKMRYPDYTETESGLQYKDLRPGNGPKPKMGETVVVDWDGYTRGYYGRIFEAQNKTKGGSFEGDDKNFVKFKIGYNEDNCAPGTWIS*

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