|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT1G66730 | AT | Annotation by Michelle Graham. TAIR10: DNA LIGASE 6 | chr1:24884991-24891823 FORWARD LENGTH=1396 | SoyBase | E_val: 8.00E-163 | ISS |
GO:0006260 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication | SoyBase | N/A | ISS |
GO:0006266 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA ligation | SoyBase | N/A | ISS |
GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
GO:0006310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA recombination | SoyBase | N/A | ISS |
GO:0009845 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed germination | SoyBase | N/A | ISS |
GO:0051103 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA ligation involved in DNA repair | SoyBase | N/A | ISS |
GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
GO:0003909 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA ligase activity | SoyBase | N/A | ISS |
GO:0003910 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA ligase (ATP) activity | SoyBase | N/A | ISS |
GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
PTHR10459 | Panther | ATP-DEPENDENT DNA LIGASE FAMILY | JGI | ISS | |
PTHR10459:SF10 | Panther | DNA LIGASE I | JGI | ISS | |
PF01068 | PFAM | ATP dependent DNA ligase domain | JGI | ISS | |
PF04679 | PFAM | ATP dependent DNA ligase C terminal region | JGI | ISS | |
UniRef100_I1N588 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA ligase (Fragment) n=2 Tax=Glycine max RepID=I1N588_SOYBN | SoyBase | E_val: 0 | ISS |
UniRef100_I1N588 | UniRef | Annotation by Michelle Graham. Best UniRef hit: DNA ligase (Fragment) n=2 Tax=Glycine max RepID=I1N588_SOYBN | SoyBase | E_val: 0 | ISS |
Glyma02g09975 not represented in the dataset |
Glyma02g09975 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.02g090400 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g09975.1 sequence type=CDS gene model=Glyma02g09975 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTTAGAACTATTTTTCCTGCATTGGCTCATGCTATTGATATGAATTCTTGCCCTACTTTGCACCAAGAAGGAACTGCAAAAAATATAAAGGACAAACTCCAGGTTCTTTCTATGGCAGTTGTTGAAGCATATAACATACTGCCAAACTTAGATCTCATTGTTCCATGTGTCATGAACAAAGGGATTGATTTTTCAGTTTCAAGTTTATCAATGGTTCCAGGAATCACTATTAAGCCTATGCTAGAAAAGATCACCAATGGTATTCCCCAAGCATTGAAGCTATTTGAAAATAAAGCATTTACATGTGAATATAAGTATGATGGTCAACGGGCTCAAATTCACAAATTAGTTGATGGATCAATTTGTGTTTTTTCAAGAAATGGGGGTGAATCAACTTCGAGATTTCCTGATCTGATTGACATATTTAAGGGATCCAGCAAGTCGGTTGCATCAACTTTCATAATGGATGCAGAAATTGTTGATATTGACAGAAAAAATGGATATAGGATCATGTCTTTCCAGGTGCTATCTTCACGTAGGAGAGGTGGCAAAGATACATTAGTGGATATTTGCATCTTTGTCTTTGATATCATGTTTGCAAATGGAGAGCACCCATTTAAGTTCTGTTTTCAGATTGAAGTAGATGATGCTTGCTTAACCTATGAAGCCACATTAACTAAGATAAATGCTTTCCTGGAAGATGCACTTTGCTCTTCATGTGAAGGAATTTTGGTGAAAACATTGGATGTTGATGCTGGGTATTCTCCATCAAAGCATTCTGACAAATGGTTAAAAGTTAATTATGTGGAAGGATTAAATGATACTCTTTATTTAGTACCGATTGGTGCTTGGCATGAAAATGGAAGGAAAGCTGGATGGTATAGTCCATTTCTTATGGCATGTTTCAATCCTGAAGCAAAGAAGTATCAAAGTGTATGTTGTGTGATGTCTAGATTCTCAGATTCATTTTACAGATTTGTTAAGTTGATGAAAGAACTCTTCTCTAGGGACAAAGTCTTGTCCAAAAAACCACCATATTATCAAACAGGAGTGGCATCAGACATGTGGTTTTGTCCACAAGTCGTTTGGGAAATAAGAGGAGCATACTTTACTGTATCCCTAGGACTTATTTGCATAACGGATGTAAAGATGGACTATTTTTTACATTTAAAAAAGATGGGGATTAATTTTTGTGCGTCAGACAGAAGCCCAAAAGAATGTAGTGCAGTTGCCAATATAGTTGAAATGTTTCATTCTCAGACTCGGAAGATGGATGCCACAGCTGGAGACTGA
>Glyma02g09975.1 sequence type=predicted peptide gene model=Glyma02g09975 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLRTIFPALAHAIDMNSCPTLHQEGTAKNIKDKLQVLSMAVVEAYNILPNLDLIVPCVMNKGIDFSVSSLSMVPGITIKPMLEKITNGIPQALKLFENKAFTCEYKYDGQRAQIHKLVDGSICVFSRNGGESTSRFPDLIDIFKGSSKSVASTFIMDAEIVDIDRKNGYRIMSFQVLSSRRRGGKDTLVDICIFVFDIMFANGEHPFKFCFQIEVDDACLTYEATLTKINAFLEDALCSSCEGILVKTLDVDAGYSPSKHSDKWLKVNYVEGLNDTLYLVPIGAWHENGRKAGWYSPFLMACFNPEAKKYQSVCCVMSRFSDSFYRFVKLMKELFSRDKVLSKKPPYYQTGVASDMWFCPQVVWEIRGAYFTVSLGLICITDVKMDYFLHLKKMGINFCASDRSPKECSAVANIVEMFHSQTRKMDATAGD*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||