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Report for Sequence Feature Glyma02g09975

Feature Type:gene_model
Chromosome:Gm02
Start:7867862
stop:7888524
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G66730AT Annotation by Michelle Graham. TAIR10: DNA LIGASE 6 | chr1:24884991-24891823 FORWARD LENGTH=1396 SoyBaseE_val: 8.00E-163ISS
GO:0006260GO-bp Annotation by Michelle Graham. GO Biological Process: DNA replication SoyBaseN/AISS
GO:0006266GO-bp Annotation by Michelle Graham. GO Biological Process: DNA ligation SoyBaseN/AISS
GO:0006281GO-bp Annotation by Michelle Graham. GO Biological Process: DNA repair SoyBaseN/AISS
GO:0006310GO-bp Annotation by Michelle Graham. GO Biological Process: DNA recombination SoyBaseN/AISS
GO:0009845GO-bp Annotation by Michelle Graham. GO Biological Process: seed germination SoyBaseN/AISS
GO:0051103GO-bp Annotation by Michelle Graham. GO Biological Process: DNA ligation involved in DNA repair SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003909GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA ligase activity SoyBaseN/AISS
GO:0003910GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA ligase (ATP) activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
PTHR10459Panther ATP-DEPENDENT DNA LIGASE FAMILY JGI ISS
PTHR10459:SF10Panther DNA LIGASE I JGI ISS
PF01068PFAM ATP dependent DNA ligase domain JGI ISS
PF04679PFAM ATP dependent DNA ligase C terminal region JGI ISS
UniRef100_I1N588UniRef Annotation by Michelle Graham. Most informative UniRef hit: DNA ligase (Fragment) n=2 Tax=Glycine max RepID=I1N588_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1N588UniRef Annotation by Michelle Graham. Best UniRef hit: DNA ligase (Fragment) n=2 Tax=Glycine max RepID=I1N588_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g09975 not represented in the dataset

Glyma02g09975 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g090400 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma02g09975.1   sequence type=CDS   gene model=Glyma02g09975   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTAGAACTATTTTTCCTGCATTGGCTCATGCTATTGATATGAATTCTTGCCCTACTTTGCACCAAGAAGGAACTGCAAAAAATATAAAGGACAAACTCCAGGTTCTTTCTATGGCAGTTGTTGAAGCATATAACATACTGCCAAACTTAGATCTCATTGTTCCATGTGTCATGAACAAAGGGATTGATTTTTCAGTTTCAAGTTTATCAATGGTTCCAGGAATCACTATTAAGCCTATGCTAGAAAAGATCACCAATGGTATTCCCCAAGCATTGAAGCTATTTGAAAATAAAGCATTTACATGTGAATATAAGTATGATGGTCAACGGGCTCAAATTCACAAATTAGTTGATGGATCAATTTGTGTTTTTTCAAGAAATGGGGGTGAATCAACTTCGAGATTTCCTGATCTGATTGACATATTTAAGGGATCCAGCAAGTCGGTTGCATCAACTTTCATAATGGATGCAGAAATTGTTGATATTGACAGAAAAAATGGATATAGGATCATGTCTTTCCAGGTGCTATCTTCACGTAGGAGAGGTGGCAAAGATACATTAGTGGATATTTGCATCTTTGTCTTTGATATCATGTTTGCAAATGGAGAGCACCCATTTAAGTTCTGTTTTCAGATTGAAGTAGATGATGCTTGCTTAACCTATGAAGCCACATTAACTAAGATAAATGCTTTCCTGGAAGATGCACTTTGCTCTTCATGTGAAGGAATTTTGGTGAAAACATTGGATGTTGATGCTGGGTATTCTCCATCAAAGCATTCTGACAAATGGTTAAAAGTTAATTATGTGGAAGGATTAAATGATACTCTTTATTTAGTACCGATTGGTGCTTGGCATGAAAATGGAAGGAAAGCTGGATGGTATAGTCCATTTCTTATGGCATGTTTCAATCCTGAAGCAAAGAAGTATCAAAGTGTATGTTGTGTGATGTCTAGATTCTCAGATTCATTTTACAGATTTGTTAAGTTGATGAAAGAACTCTTCTCTAGGGACAAAGTCTTGTCCAAAAAACCACCATATTATCAAACAGGAGTGGCATCAGACATGTGGTTTTGTCCACAAGTCGTTTGGGAAATAAGAGGAGCATACTTTACTGTATCCCTAGGACTTATTTGCATAACGGATGTAAAGATGGACTATTTTTTACATTTAAAAAAGATGGGGATTAATTTTTGTGCGTCAGACAGAAGCCCAAAAGAATGTAGTGCAGTTGCCAATATAGTTGAAATGTTTCATTCTCAGACTCGGAAGATGGATGCCACAGCTGGAGACTGA

>Glyma02g09975.1   sequence type=predicted peptide   gene model=Glyma02g09975   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLRTIFPALAHAIDMNSCPTLHQEGTAKNIKDKLQVLSMAVVEAYNILPNLDLIVPCVMNKGIDFSVSSLSMVPGITIKPMLEKITNGIPQALKLFENKAFTCEYKYDGQRAQIHKLVDGSICVFSRNGGESTSRFPDLIDIFKGSSKSVASTFIMDAEIVDIDRKNGYRIMSFQVLSSRRRGGKDTLVDICIFVFDIMFANGEHPFKFCFQIEVDDACLTYEATLTKINAFLEDALCSSCEGILVKTLDVDAGYSPSKHSDKWLKVNYVEGLNDTLYLVPIGAWHENGRKAGWYSPFLMACFNPEAKKYQSVCCVMSRFSDSFYRFVKLMKELFSRDKVLSKKPPYYQTGVASDMWFCPQVVWEIRGAYFTVSLGLICITDVKMDYFLHLKKMGINFCASDRSPKECSAVANIVEMFHSQTRKMDATAGD*







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