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Report for Sequence Feature Glyma02g09950

Feature Type:gene_model
Chromosome:Gm02
Start:7846496
stop:7849844
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g09950
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G60640AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown. | chr1:22337534-22339513 REVERSE LENGTH=298 SoyBaseE_val: 1.00E-16ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1JDM2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JDM2_SOYBN SoyBaseE_val: 2.00E-165ISS
UniRef100_O22702UniRef Annotation by Michelle Graham. Most informative UniRef hit: F8A5.16 protein n=1 Tax=Arabidopsis thaliana RepID=O22702_ARATH SoyBaseE_val: 5.00E-13ISS

Expression Patterns of Glyma02g09950
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g09950
ParalogEvidenceComments
Glyma18g53020 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g09950 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g090200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g09950
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g09950
>Glyma02g09950.1   sequence type=CDS   gene model=Glyma02g09950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAAAGAGGAGGTTCTTCAAGCTCGATCACGGTGATCGAGAGGCCTCCGATCCGTCTTCTTCTTCTTCGGACTCCGAGCTTGAAGCCGTAGCTGAAACCTCTGAAGAAGAATCAGAGGAAGATGCAATAGCAGAAGTGAAACCGAATGATGATGAAGCTGGCTCAAATTCTTCTGGGTATGCAAGTGAGGATAGTTCTGCGAATGATGTTGATGTCAACTCAGCAGGTCTGCTATTTAGTGAAGATGATGCTGGAGCTATAAACGAAAGACAAATGCTTATTAACAGAGAGTTGCTGAGTAAAGGTGATACCGAAAAGTCTAATGTCTTGGCTGAAAAGAAATCCTTACCGACAGATTTGCCATCCCATGTCTTAAAATGCAAATCAGTATTTAAGTGCAGGCTGTGTCCCCGGATTATCTGTTTATCTGAGGAAACTTTGCGGGATCATCTGCAATCAAAGAGACATGCTCGATCTGAAAAACTACTTAGCGAAGGTAGACTGAAGGCTATCCTCAACAGTGATGGTGAAATTGAGAACCAAGAGATCTCAGAGATCCAAACTAAAGATTCGGAGGATGATGCGGAGAAGAATCACAAAGGGAAGAAGCAGCATAAAAAGAGATTGAGAAAGAAGAAAAGAGACAAAGCAAGCGCAAGGAAAATGCTGTCAACGAAAGAGCCAGGCAAGAGGAGAAAGAAATGA
Predicted protein sequences of Glyma02g09950
>Glyma02g09950.1   sequence type=predicted peptide   gene model=Glyma02g09950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIKRRFFKLDHGDREASDPSSSSSDSELEAVAETSEEESEEDAIAEVKPNDDEAGSNSSGYASEDSSANDVDVNSAGLLFSEDDAGAINERQMLINRELLSKGDTEKSNVLAEKKSLPTDLPSHVLKCKSVFKCRLCPRIICLSEETLRDHLQSKRHARSEKLLSEGRLKAILNSDGEIENQEISEIQTKDSEDDAEKNHKGKKQHKKRLRKKKRDKASARKMLSTKEPGKRRKK*






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