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Report for Sequence Feature Glyma02g09920

Feature Type:gene_model
Chromosome:Gm02
Start:7814186
stop:7818811
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g09920
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G66760AT Annotation by Michelle Graham. TAIR10: MATE efflux family protein | chr1:24902110-24904213 FORWARD LENGTH=482 SoyBaseE_val: 3.00E-175ISS
GO:0006855GO-bp Annotation by Michelle Graham. GO Biological Process: drug transmembrane transport SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009620GO-bp Annotation by Michelle Graham. GO Biological Process: response to fungus SoyBaseN/AISS
GO:0009695GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0055085GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane transport SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0005215GO-mf Annotation by Michelle Graham. GO Molecular Function: transporter activity SoyBaseN/AISS
GO:0015238GO-mf Annotation by Michelle Graham. GO Molecular Function: drug transmembrane transporter activity SoyBaseN/AISS
GO:0015297GO-mf Annotation by Michelle Graham. GO Molecular Function: antiporter activity SoyBaseN/AISS
KOG1347 KOG Uncharacterized membrane protein, predicted efflux pump JGI ISS
PTHR11206Panther MULTIDRUG RESISTANCE PUMP JGI ISS
PTHR11206:SF11Panther MULTI ANTIMICROBIAL EXTRUSION (MATE) FAMILY TRANSPORTER-RELATED JGI ISS
PF01554PFAM MatE JGI ISS
UniRef100_B9SPZ5UniRef Annotation by Michelle Graham. Most informative UniRef hit: TRANSPARENT TESTA 12 protein, putative n=1 Tax=Ricinus communis RepID=B9SPZ5_RICCO SoyBaseE_val: 0ISS
UniRef100_I1JDL9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JDL9_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma02g09920
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g09920
ParalogEvidenceComments
Glyma18g53050 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g09920 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g089900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g09920
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g09920
>Glyma02g09920.1   sequence type=CDS   gene model=Glyma02g09920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAGACATTGTTGCCAAAAGAAAACAAGAGGGTGACCTTAACAAACTCAAAGAGTAGTAGTGGCTTTGTCCAAGAGTTGAAGAATGTGAGTTTGATGGCAGCACCAATGGTGGTGGTCTCAGTGTCACAGTTTTTGCTGCAAGTGGTGTCATTGATGATGGCTGGTCATCTTGGTGAACTCTCCCTTGCAGGGGTTGCATTGGCTACTTCCTTTGCTGATGTCACTGGCTTTAGCATACTTATGGGAATGGCTGGTGCTTTGGAAACTCAATGTGGCCAATCATTTGGAGCAGAGCAATTTCATAAGCTTGGAAACTATGTCTTCTGTGCAATACTCTCTCTCATTTTAAGTAGTGTCCCAATATCTATCATATGGATTTTCATGGATAAACTGCTTATTCTTTTGGGGCAAGACCATGCTATTTCACTAATAGCAGGAAACTACTGCATTTGGCTCATTCCTGCACTCTTTGGTTATGCTGTTCTTCAAGCTTTGGTTCGTTATTTTCAGACTCAGAGCTTGATCTTTCCAATGTTGGTAACCTCAGTTGTTGTTTTAGTTTTGCACATACCTATTTGTTGGGTACTAGTGTTTGGACTGGGACTTGGACAAAATGGAGCAGCAATATCCATTGGAATTTCATATTGGCTCAGTGTCATGTTACTTTTAATTTACACAAAGTATTATCCATCATGTCAGAAAACTAAGATAGCCTTAGGTAGCAATGCTTTAAGAAGCATCAAGGAGTTCTTCTTCTTAGCCATCCCATCTGCACTTATGATTTGTTTTGAGTGGTGGTCATTTGAGCTGGTAGTAATACTTGCTGGACTTTTACCAAATCCCAAACTTGAAACTTCCGTTCTATCAATCTGCCTTAACATTTGCACCTTGCACTATTTCATTCCATATGGAACCGGTGCTGCAGTAAGTACCCGGGTTTCGAATGAATTAGGGGCACGAAGACCACAGGCAGCGCGAGAGGCTGTTTTTGCTGTAATTGTTCTAGCATTCACGGATGCAGTTGTCTTTAGCTCTGTTCTCTTTTGCTTCCGTCATGTGTTGGGATTTGCATTTAGCAATGAGATGGAAGTTGTACATTATGTTGCAAAGATAGTTCCTGTGCTTTGTCTCTCTTTCATGGTGGATGGCTTTCTAGGAGTTTTGTGTGGAATTGTCAGAGGCAGTGGATGGCAGAAGATAGGGGCAATTACCAATCTTGTAGCATATTATGCCGTGGGAATCCCTGTGTCTCTCTTGTTTGGTTTTGGTCTTAACTTCAATGGTAAAGGCCTTTGGATTGGAATATTAACCGGATCTACACTACAAACAATAATACTGGCTTTGCTGACAGCATTTACAAACTGGGAAAAACAGGCATCTTTGGCAATTGAGAGATTATCCGAGCCTGATGAGACTGTTTTTTAA
Predicted protein sequences of Glyma02g09920
>Glyma02g09920.1   sequence type=predicted peptide   gene model=Glyma02g09920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEETLLPKENKRVTLTNSKSSSGFVQELKNVSLMAAPMVVVSVSQFLLQVVSLMMAGHLGELSLAGVALATSFADVTGFSILMGMAGALETQCGQSFGAEQFHKLGNYVFCAILSLILSSVPISIIWIFMDKLLILLGQDHAISLIAGNYCIWLIPALFGYAVLQALVRYFQTQSLIFPMLVTSVVVLVLHIPICWVLVFGLGLGQNGAAISIGISYWLSVMLLLIYTKYYPSCQKTKIALGSNALRSIKEFFFLAIPSALMICFEWWSFELVVILAGLLPNPKLETSVLSICLNICTLHYFIPYGTGAAVSTRVSNELGARRPQAAREAVFAVIVLAFTDAVVFSSVLFCFRHVLGFAFSNEMEVVHYVAKIVPVLCLSFMVDGFLGVLCGIVRGSGWQKIGAITNLVAYYAVGIPVSLLFGFGLNFNGKGLWIGILTGSTLQTIILALLTAFTNWEKQASLAIERLSEPDETVF*






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