Report for Sequence Feature Glyma02g09780
Feature Type: gene_model
Chromosome: Gm02
Start: 7735964
stop: 7738306
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g09780
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G18280 AT
Annotation by Michelle Graham. TAIR10: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr3:6267102-6267392 FORWARD LENGTH=96
SoyBase E_val: 3.00E-31 ISS
GO:0006612 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane
SoyBase N/A ISS
GO:0006869 GO-bp
Annotation by Michelle Graham. GO Biological Process: lipid transport
SoyBase N/A ISS
GO:0009963 GO-bp
Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process
SoyBase N/A ISS
GO:0010363 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0008289 GO-mf
Annotation by Michelle Graham. GO Molecular Function: lipid binding
SoyBase N/A ISS
PF00234 PFAM
Protease inhibitor/seed storage/LTP family
JGI ISS
UniRef100_C6SZ93 UniRef
Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6SZ93_SOYBN
SoyBase E_val: 1.00E-59 ISS
UniRef100_Q43681 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Probable non-specific lipid-transfer protein AKCS9 n=1 Tax=Vigna unguiculata RepID=NLTP_VIGUN
SoyBase E_val: 9.00E-32 ISS
Expression Patterns of Glyma02g09780
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma02g09780
Paralog Evidence Comments
Glyma18g53150 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma02g09780 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.02g088900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma02g09780
Coding sequences of Glyma02g09780
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g09780.2 sequence type=CDS gene model=Glyma02g09780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATGATGAAGTCTGCTATGTGTGCAGTGGTGGTTGTAGCACTTCTTCTTCTGGCGGAGGTGGGGCCCATGGCTGAGGCTGTGACATGCACCCCAACAGAGTTGAGTCCGTGTCTTCCAGCAATCACTTCCGGTGCTAAACCTTCCAATGCTTGTTGCACGAAGCTGAAGCAGCAAAAACCATGCTTATGTGGCTACCTCAAAAACGCTAGCTTGAAGCAGTATGTTAACTCTCCTAATGCCCGAAAAACCGTTGCTTCTTGTGGGATTCCCTTTCCAACTTGTTAA
Predicted protein sequences of Glyma02g09780
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g09780.2 sequence type=predicted peptide gene model=Glyma02g09780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MMMKSAMCAVVVVALLLLAEVGPMAEAVTCTPTELSPCLPAITSGAKPSNACCTKLKQQKPCLCGYLKNASLKQYVNSPNARKTVASCGIPFPTC*