Glyma02g09770 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma02g09770

Feature Type:	gene_model
Chromosome:	Gm02
Start:	7723602
stop:	7726354
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g09770

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G38200	AT	Annotation by Michelle Graham. TAIR10: Class I glutamine amidotransferase-like superfamily protein \| chr5:15256383-15258474 FORWARD LENGTH=436	SoyBase	E_val: 0	ISS
GO:0006541	GO-bp	Annotation by Michelle Graham. GO Biological Process: glutamine metabolic process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
PTHR11922	Panther	GMP SYNTHASE-RELATED	JGI		ISS
PTHR11922:SF16	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF07722	PFAM	Peptidase C26	JGI		ISS
UniRef100_B9RSP8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative n=1 Tax=Ricinus communis RepID=B9RSP8_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JDL2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JDL2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g09770

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g09770

Paralog	Evidence	Comments
Glyma18g53170	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g09770 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g088800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g09770

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g09770

Limit To All Plant Sequences

>Glyma02g09770.1   sequence type=CDS   gene model=Glyma02g09770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCACCGATCTCTCTGTCATTCTCCCTCGTGTTCTCATTGTCTCTAGACGAAGCGTTCGCAAAAACAAGTTCGTTGATTTCGTTGGTGAATATCACCTAGATCTTATAGTAGGGTATGGCGCGGTGCCCGTGATTGTTCCTCGTGTTTCCGGGGTGCACATGTTGTTGGATAGCTTTGAGCCAATCCACGGCGTGCTTCTGTGTGAAGGTGAAGACATTGATCCTTCTTGGTACGAACAAGATATCGCGGGTCTTTCACAAGAGGAATTGGAAGAGATTAAAAGGCTTCATGCAAGTGACACGGCCATTGACAAAGAGAAAGACTCAATTGAGTTGAGTCTCGCCAAGCTATGTCTCGAGAGGAACATTCCCTACTTGGGAATTTGCAGGGGCTCACAGATTCTTAATGTTGCATGTGGGGGTACCCTTTACCAGGACATAGGGAAAGAGCTTTCAATTAAGTGTCTCGATAGCCAAAGGGTTATGCACATAAACTATGACGATTATGATGGGCATAGGCACGATGTGGAAGTGGTTGAAAACACCCCTTTGCATCATTGGTTTAAGGATTCTTTGGAAGAAGGAAAAATGAATATTTGTGTTAATAGCTATCACCATCAAGGGGTCAAGAGATTGGCACAACGTTTTGTGCCAATGGTCTTTGCACCTGATGGCTTGATTGAAGGGTTTTATGACCCAGATGCTTATAATCCAGAGGAGGGTAAGTTCATTATGGGATTGCAGTTTCACCCTGAGCGTATGAGGAAGCCTGATTCGGATGAGTTTGATTACCCAGGATGCCCCTTTGCTTATAAGGAATTTGTAAAAGCAGTTGTTGCTCATCAGAAGAAGCTGAACAGCTTAACATCCGTACAAAAGCCTATTAAGCTTAATAAGGAAATGGAAATCAAAAGGAAGATTATTGTGCGTAGTTTCTCACTTGCCAAAAACCTATACATTGCTGGCCGTGGAACTAATTCCCCCAAAGAGACTGAACTCGAAGCTGGAGCAGAATTTCTTGAGTCCAACACAGCCTTGAGTGTGCAACAAGAGAATAGGTTAAAGCAAATGGGTGCAACGGTTAGGAATGCAGGCTCCTACATAGAGAGACTGAAGCTAAACGAGGAAAGAGAAAAAATGGCAAGAAATGTGATGGCGAAAATGACCGTGGAACAGTTGTCTGATCTCTTGTCTTTCTATCACACTATGGGACAAATTTGTTCAGAAGTATTGGATATTAAGATACATGGCCTTGTCAATGACTTAGGTTCATGA

Predicted protein sequences of Glyma02g09770

Limit To All Plant Sequences

>Glyma02g09770.1   sequence type=predicted peptide   gene model=Glyma02g09770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTDLSVILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPVIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSWYEQDIAGLSQEELEEIKRLHASDTAIDKEKDSIELSLAKLCLERNIPYLGICRGSQILNVACGGTLYQDIGKELSIKCLDSQRVMHINYDDYDGHRHDVEVVENTPLHHWFKDSLEEGKMNICVNSYHHQGVKRLAQRFVPMVFAPDGLIEGFYDPDAYNPEEGKFIMGLQFHPERMRKPDSDEFDYPGCPFAYKEFVKAVVAHQKKLNSLTSVQKPIKLNKEMEIKRKIIVRSFSLAKNLYIAGRGTNSPKETELEAGAEFLESNTALSVQQENRLKQMGATVRNAGSYIERLKLNEEREKMARNVMAKMTVEQLSDLLSFYHTMGQICSEVLDIKIHGLVNDLGS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain