Glyma02g09730 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma02g09730

Feature Type:	gene_model
Chromosome:	Gm02
Start:	7693489
stop:	7702267
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g09730

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G16180	AT	Annotation by Michelle Graham. TAIR10: ortholog of maize chloroplast splicing factor CRS1 \| chr5:5279884-5282898 FORWARD LENGTH=720	SoyBase	E_val: 0	ISS
GO:0000373	GO-bp	Annotation by Michelle Graham. GO Biological Process: Group II intron splicing	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG1990	KOG	Poly(A)-specific exoribonuclease PARN	JGI		ISS
PF01985	PFAM	CRS1 / YhbY (CRM) domain	JGI		ISS
UniRef100_I1JDK9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JDK9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9LF10	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic n=1 Tax=Arabidopsis thaliana RepID=CRS1_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g09730

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g09730

Paralog	Evidence	Comments
Glyma18g53241	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g09730 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g088500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g09730

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g09730

Limit To All Plant Sequences

>Glyma02g09730.2   sequence type=CDS   gene model=Glyma02g09730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTCTTTCTTTCCTTTCATCCTTCTCTATCTACAAATTCATATTCATATTCTCGCTTTCACATTTCCTCTTCTCTGCCCCCAAACTCCAACAATGGCCATAATCATCAACACACTTCAACTTCACCTTCTGATGTTCCCATCAAAGCCCCCATTCCTCCATGGATGAAGAAGGGTCCTCTTCTTCTCCAACCCCACGAGCTCTTTCACCTCTCCAACCCCAAATCCAAGAAGTTCAAGCCGGAAAAACATGAACTTTCTGATAAAGCTTTGATGGGAAAGGAGGTAAGAGGGAAGAGGGCAATGAAGAAGATTGTGGAGAGGGTTGAAAAGCTTCACAAGACTCAGAATTCATATGAGACTCGAGTTGGTTCCCTCAATGTTGAAAACTTTGGAGGATATTTGAAAAATTTGAAGGAAAATGATGAGGATGAGAAGTTTGGTTTTGTGAAAGTGAAAAGGGAAAAGGTTGTCACTGCTGCGGAGTTGACTCTTGATAAGGTGCTGCTTCGAAAGTTGAGGAATGAAGCTGAAAGAATGAGAACGTGGATCAAGGTTAAGAAAGCTAGAGTTACACAAGATGTTGTGGATCAAATTAAAAGGACTTGGAGGAGAAATGAGCTTGCCATGACTAAATTTGATATCCCTTTGTGCCGGAACATGGATAGAGCTCGAGAAATTGTTGAGACAGGAGGCTTGGTTGTTTTGAGTAAGAAGGATTTTCTTGTGGTTTACCGAGGATGCAATCATCAGTTGACCACTAAAGAGAGGGAAACTAATAGATTGTTGGATGGCTTACGCCCTCGTTTCATTGATTGGTGGATGCACAAGCCACTTCCAGTAGATGCCGACTTACTTCCTGTAGAGGTTCCTAGATTTCAGCCTCCATTTAGGCTTTGTCCACCTCATTCTAGTGCTAAACAAACTGCTTATGAACTAACATACTTCAGGAAGCTTGCTCAACCTTTACCAACTCATTTTGTCCTTGGAAGGAACAAAGGACTCAAGGGATTAGCTGCTGCTATCTTAAAGTTGTGGGAGAAGAGTCTTATAGCAAAAATTGCTATCAAGTATGGAATTCCAAATATTGACAATGAAATGATGGCCACTGAACTGAAGGCAAATTATCTTGCAAATATGCTCTATTGTCTCACTGGAGGAGTTTTGTTGTTGCGCAACAAGTTTTACATATTACTCTATAGGGGAAATGATTTCCTTCCAAGAAGAGTTGCATCTTTGGTGGAAAAGAGAGAATTGGAGCTTAAAAGTTGCCAACATCACGAAGAAGTTGCACGGATGAAAGCAATTCAAGCCTTTTCTCCCATTGGTGAAGTGACACAAGACACTAGTACAAGTGGAACTTTAACAAAATTTAGGAAAATCCAAACAAAGCTTGAGGAGACAAAAAATGTAAACAAAGATTTGAACATTCAACTGGAAGCAGAAATATGTAGAGTGGAGAGGGAATTGAAGGAGGAACAGCGCAGAGCATTCATTCTTAACAAGAAAATAGAGAGATCAGAGAGGGAATTATCAAAGTTAAATGCTGCATGGACACCTAGTGAGCAGGATATTGACTTGGAAATAATGACAGATGAAGAGAGAGAATGTTTTCGAAAGATAGGATTGAAGATGAAAAGTTCCTTACTGCTTGGCAGGCGTGGAATCTTTGCCGGTGTATTGGAAGGCCTACATCAGCATTGGAAACACAGAGAAGTAGTGAAGAATGTTACAGTCATTACAATGCAGAAACTATTCAGTCAAGTAATCAACACTGCAAAATTATTGGAGACAGAAAGTGGTGGAATTTTAGTTTCAGTTGATAAACTGAAAGAGGGCCATGCTGTTATTGTCTACCGTGGAAAAAACTATAAACGGCCTTCAAGAAAGTTAGCAAAAAATCTTCTAACCAAGAGAGAAGCTTTGCGTAGATCTCTTGAAATGCAGAGAATTGGATCGCTGAAGTTTTTTGCTCGTCAGAGAGAGCAGGCAATCTCCAAGTTAGAGAAATCAAGTGTTTATGCTTCATGA

Predicted protein sequences of Glyma02g09730

Limit To All Plant Sequences

>Glyma02g09730.2   sequence type=predicted peptide   gene model=Glyma02g09730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLFLSFHPSLSTNSYSYSRFHISSSLPPNSNNGHNHQHTSTSPSDVPIKAPIPPWMKKGPLLLQPHELFHLSNPKSKKFKPEKHELSDKALMGKEVRGKRAMKKIVERVEKLHKTQNSYETRVGSLNVENFGGYLKNLKENDEDEKFGFVKVKREKVVTAAELTLDKVLLRKLRNEAERMRTWIKVKKARVTQDVVDQIKRTWRRNELAMTKFDIPLCRNMDRAREIVETGGLVVLSKKDFLVVYRGCNHQLTTKERETNRLLDGLRPRFIDWWMHKPLPVDADLLPVEVPRFQPPFRLCPPHSSAKQTAYELTYFRKLAQPLPTHFVLGRNKGLKGLAAAILKLWEKSLIAKIAIKYGIPNIDNEMMATELKANYLANMLYCLTGGVLLLRNKFYILLYRGNDFLPRRVASLVEKRELELKSCQHHEEVARMKAIQAFSPIGEVTQDTSTSGTLTKFRKIQTKLEETKNVNKDLNIQLEAEICRVERELKEEQRRAFILNKKIERSERELSKLNAAWTPSEQDIDLEIMTDEERECFRKIGLKMKSSLLLGRRGIFAGVLEGLHQHWKHREVVKNVTVITMQKLFSQVINTAKLLETESGGILVSVDKLKEGHAVIVYRGKNYKRPSRKLAKNLLTKREALRRSLEMQRIGSLKFFARQREQAISKLEKSSVYAS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain