Glyma02g09710 - SoyBase

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Report for Sequence Feature Glyma02g09710

Feature Type:	gene_model
Chromosome:	Gm02
Start:	7672242
stop:	7674181
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g09710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G39060	AT	Annotation by Michelle Graham. TAIR10: Nodulin MtN3 family protein \| chr2:16306818-16308206 REVERSE LENGTH=258	SoyBase	E_val: 4.00E-89	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005887	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0051119	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sugar transmembrane transporter activity	SoyBase	N/A	ISS
KOG1623	KOG	Multitransmembrane protein	JGI		ISS
PTHR10791	Panther	STROMAL CELL PROTEIN/NODULIN MTN3-RELATED	JGI		ISS
PF03083	PFAM	MtN3/saliva family	JGI		ISS
UniRef100_G7K8I6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein RUPTURED POLLEN GRAIN n=1 Tax=Medicago truncatula RepID=G7K8I6_MEDTR	SoyBase	E_val: 8.00E-118	ISS
UniRef100_I1JDK7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JDK7_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma02g09710

Locus	Gene Symbol	Protein Name
	SWEET1	sucrose transporter gene 1
	SWEET1	sucrose effluxer gene 1

Expression Patterns of Glyma02g09710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g09710

Paralog	Evidence	Comments
Glyma18g53250	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g09710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g088400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g09710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g09710

Limit To All Plant Sequences

>Glyma02g09710.1   sequence type=CDS   gene model=Glyma02g09710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTCAATTTCTGATCATGAACTGGTTTTGATCTTTGGTCTCCTAGGTAACATTGTGTCATTCATGGTGTTCTTAGCACCCTTGCCAACCTTCTATACAATTTACAAGAAGAAATCATCAGAAGGATTTCAATCAATTCCATATGCGGTTGCACTTCTTAGCGCACTGTTGCTTCTATATTATGGCTTCATAAAGACCAATGCTACTTTGATTATCACCATCAACTGTATTGGATGTGTTATAGAAGTTTCATACCTAACAATGTACATTATATATGCTCCCAGGAAACAGAAGATATCCACTTTGGTAATGATACTCATTGCCGACATTGGAGGTTTTGGCTTAACCATGTTAATCACCACCTTTGCTGTGAAGGGCATTAACCGTGTCCATGCTGTGGGATGGATTTGTGCCATTTTTAACATTGCAGTGTTTGCTGCTCCCTTAAGCATAATGAGGAGGGTCATAAAAACCAAAAGTGTAGAGTTCATGCCATTTTCATTGTCCTTATTTCTTACGCTCTGCGCCACCATGTGGTTTTTCTATGGTTTCTTCGACAAGGATGACTTCATTATGTTTCCAAATGTGTTAGGATTTATTTTTGGCATCTCTCAAATGATTTTATACATGATATACAAGAATTCTAAGAAGAATGGAGAAACCAATTGTACAGAGCAGCAAGAAAGTGAGGGCACAGTGAACTCCAAACAGCACAGCTGCGATGGAAATAAACTCGATTTTCCTTCACTGGTGGAAATGAAAGAGAATCAACTCAATCAAGTTTGA

Predicted protein sequences of Glyma02g09710

Limit To All Plant Sequences

>Glyma02g09710.1   sequence type=predicted peptide   gene model=Glyma02g09710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSISDHELVLIFGLLGNIVSFMVFLAPLPTFYTIYKKKSSEGFQSIPYAVALLSALLLLYYGFIKTNATLIITINCIGCVIEVSYLTMYIIYAPRKQKISTLVMILIADIGGFGLTMLITTFAVKGINRVHAVGWICAIFNIAVFAAPLSIMRRVIKTKSVEFMPFSLSLFLTLCATMWFFYGFFDKDDFIMFPNVLGFIFGISQMILYMIYKNSKKNGETNCTEQQESEGTVNSKQHSCDGNKLDFPSLVEMKENQLNQV*

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